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PMC:3589482 / 26991-27165 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12363 173-174 . denotes .
T12362 165-173 NN denotes promoter
T12361 156-164 JJ denotes proximal
T12360 147-155 NNP denotes SerpinB2
T12359 143-146 DT denotes the
T12358 138-142 IN denotes from
T12357 124-137 NN denotes transcription
T12356 110-123 JJ denotes LPS-inducible
T12355 106-109 IN denotes for
T12354 97-105 JJ denotes critical
T12353 93-96 VBP denotes are
T12352 84-92 NNS denotes elements
T12351 73-83 JJ denotes cis-acting
T12350 68-72 JJ denotes AP-1
T12349 63-67 DT denotes both
T12348 59-62 CC denotes and
T12347 55-58 NNP denotes CRE
T12346 51-54 DT denotes the
T12345 48-50 IN denotes as
T12344 43-47 RB denotes well
T12343 40-42 RB denotes as
T12342 38-39 , denotes ,
T12341 31-38 NN denotes element
T12340 25-30 NNP denotes C/EBP
T12339 21-24 DT denotes the
T12338 16-20 IN denotes that
T12337 11-15 VBP denotes show
T12336 6-10 NNS denotes data
T12335 0-5 DT denotes These
R9135 T12335 T12336 det These,data
R9136 T12336 T12337 nsubj data,show
R9137 T12337 T12337 ROOT show,show
R9138 T12338 T12353 mark that,are
R9139 T12339 T12341 det the,element
R9140 T12340 T12341 compound C/EBP,element
R9141 T12341 T12353 nsubj element,are
R9142 T12342 T12341 punct ",",element
R9143 T12343 T12345 advmod as,as
R9144 T12344 T12345 advmod well,as
R9145 T12345 T12341 cc as,element
R9146 T12346 T12347 det the,CRE
R9147 T12347 T12341 conj CRE,element
R9148 T12348 T12347 cc and,CRE
R9149 T12349 T12352 det both,elements
R9150 T12350 T12352 amod AP-1,elements
R9151 T12351 T12352 amod cis-acting,elements
R9152 T12352 T12347 conj elements,CRE
R9153 T12353 T12337 ccomp are,show
R9154 T12354 T12353 acomp critical,are
R9155 T12355 T12354 prep for,critical
R9156 T12356 T12357 amod LPS-inducible,transcription
R9157 T12357 T12355 pobj transcription,for
R9158 T12358 T12357 prep from,transcription
R9159 T12359 T12362 det the,promoter
R9160 T12360 T12362 nmod SerpinB2,promoter
R9161 T12361 T12362 amod proximal,promoter
R9162 T12362 T12358 pobj promoter,from
R9163 T12363 T12337 punct .,show

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11843 165-173 NN denotes promoter
T11842 156-164 JJ denotes proximal
T11841 147-155 NN denotes SerpinB2
T11840 143-146 DT denotes the
T11839 138-142 IN denotes from
T11838 124-137 NN denotes transcription
T11837 110-123 JJ denotes LPS-inducible
T11836 106-109 IN denotes for
T11835 97-105 JJ denotes critical
T11834 93-96 VB denotes are
T11833 84-92 NN denotes elements
T11832 73-83 JJ denotes cis-acting
T11831 68-72 NN denotes AP-1
T11830 63-67 DT denotes both
T11829 59-62 CC denotes and
T11828 55-58 NN denotes CRE
T11827 51-54 DT denotes the
T11826 48-50 IN denotes as
T11825 43-47 RB denotes well
T11824 40-42 RB denotes as
T11823 38-39 -COMMA- denotes ,
T11822 31-38 NN denotes element
T11821 25-30 NN denotes C/EBP
T11820 21-24 DT denotes the
T11819 16-20 IN denotes that
T11818 11-15 VB denotes show
T11817 6-10 NN denotes data
T11816 0-5 DT denotes These
R8765 T11817 T11816 arg1Of data,These
R8766 T11817 T11818 arg1Of data,show
R8767 T11822 T11820 arg1Of element,the
R8768 T11822 T11821 arg1Of element,C/EBP
R8769 T11822 T11826 arg1Of element,as
R8770 T11826 T11823 arg1Of as,","
R8771 T11826 T11824 arg1Of as,as
R8772 T11826 T11825 arg1Of as,well
R8773 T11826 T11829 arg1Of as,and
R8774 T11828 T11826 arg2Of CRE,as
R8775 T11828 T11827 arg1Of CRE,the
R8776 T11829 T11834 arg1Of and,are
R8777 T11829 T11835 arg1Of and,critical
R8778 T11833 T11829 arg2Of elements,and
R8779 T11833 T11830 arg1Of elements,both
R8780 T11833 T11831 arg1Of elements,AP-1
R8781 T11833 T11832 arg1Of elements,cis-acting
R8782 T11834 T11818 arg2Of are,show
R8783 T11834 T11819 arg1Of are,that
R8784 T11835 T11834 arg2Of critical,are
R8785 T11835 T11836 arg1Of critical,for
R8786 T11838 T11836 arg2Of transcription,for
R8787 T11838 T11837 arg1Of transcription,LPS-inducible
R8788 T11838 T11839 arg1Of transcription,from
R8789 T11843 T11839 arg2Of promoter,from
R8790 T11843 T11840 arg1Of promoter,the
R8791 T11843 T11841 arg1Of promoter,SerpinB2
R8792 T11843 T11842 arg1Of promoter,proximal

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11530 147-155 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11877 68-72 http://www.uniprot.org/uniprot/P05412 denotes AP-1

GO-BP

Id Subject Object Predicate Lexical cue
T11536 124-137 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T11450 0-174 Sentence denotes These data show that the C/EBP element, as well as the CRE and both AP-1 cis-acting elements are critical for LPS-inducible transcription from the SerpinB2 proximal promoter.
T170 0-174 Sentence denotes These data show that the C/EBP element, as well as the CRE and both AP-1 cis-acting elements are critical for LPS-inducible transcription from the SerpinB2 proximal promoter.

simple1

Id Subject Object Predicate Lexical cue
T11563 147-155 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T11873 110-123 Positive_regulation denotes LPS-inducible
T11872 97-105 Positive_regulation denotes critical
T11871 124-137 Transcription denotes transcription
T11863 147-155 Protein denotes SerpinB2
R8801 T11863 T11871 themeOf SerpinB2,transcription
R8804 T11871 T11872 themeOf transcription,critical
R8805 T11871 T11873 themeOf transcription,LPS-inducible

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T11927 147-155 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T11912 147-155 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12030 110-113 Entity denotes LPS
T12026 51-58 Protein denotes the CRE
T12017 68-72 Protein denotes AP-1
T12016 147-155 Protein denotes SerpinB2
T12006 25-30 Protein denotes C/EBP
T11983 143-173 Entity denotes the SerpinB2 proximal promoter

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11956 97-105 Positive_regulation denotes critical
T11955 124-137 Transcription denotes transcription
T11954 147-173 Protein denotes SerpinB2 proximal promoter
T11953 25-38 Protein denotes C/EBP element
R8826 T11953 T11956 causeOf C/EBP element,critical
R8827 T11954 T11955 themeOf SerpinB2 proximal promoter,transcription
R8828 T11955 T11956 themeOf transcription,critical

testone

Id Subject Object Predicate Lexical cue
T11411 147-155 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T11442 147-155 Protein denotes SerpinB2
T11426 147-155 Protein denotes SerpinB2