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PMC:3589482 / 25449-25554 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12226 104-105 . denotes .
T12225 103-104 NNP denotes ]
T12224 101-103 CD denotes 58
T12223 100-101 NNP denotes [
T12222 95-99 NN denotes gene
T12221 86-94 NNP denotes SerpinB2
T12220 82-85 DT denotes the
T12219 79-81 IN denotes of
T12218 68-78 NN denotes activation
T12217 56-67 JJ denotes LPS-induced
T12216 53-55 IN denotes in
T12215 48-52 NN denotes site
T12214 42-47 NNP denotes C/EBP
T12213 37-41 DT denotes this
T12212 26-36 VBN denotes implicated
T12211 17-25 RB denotes recently
T12210 12-16 RB denotes also
T12209 7-11 VBP denotes have
T12208 0-6 NNS denotes Others
R9008 T12208 T12212 nsubj Others,implicated
R9009 T12209 T12212 aux have,implicated
R9010 T12210 T12212 advmod also,implicated
R9011 T12211 T12212 advmod recently,implicated
R9012 T12212 T12212 ROOT implicated,implicated
R9013 T12213 T12215 det this,site
R9014 T12214 T12215 compound C/EBP,site
R9015 T12215 T12212 dobj site,implicated
R9016 T12216 T12212 prep in,implicated
R9017 T12217 T12218 amod LPS-induced,activation
R9018 T12218 T12216 pobj activation,in
R9019 T12219 T12218 prep of,activation
R9020 T12220 T12222 det the,gene
R9021 T12221 T12222 compound SerpinB2,gene
R9022 T12222 T12219 pobj gene,of
R9023 T12223 T12225 nmod [,]
R9024 T12224 T12225 nummod 58,]
R9025 T12225 T12212 npadvmod ],implicated
R9026 T12226 T12212 punct .,implicated

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11721 103-104 -RRB- denotes ]
T11720 101-103 CD denotes 58
T11719 100-101 -LRB- denotes [
T11718 95-99 NN denotes gene
T11717 86-94 NN denotes SerpinB2
T11716 82-85 DT denotes the
T11715 79-81 IN denotes of
T11714 68-78 NN denotes activation
T11713 56-67 JJ denotes LPS-induced
T11712 53-55 IN denotes in
T11711 48-52 NN denotes site
T11710 42-47 NN denotes C/EBP
T11709 37-41 DT denotes this
T11708 26-36 VB denotes implicated
T11707 17-25 RB denotes recently
T11706 12-16 RB denotes also
T11705 7-11 VB denotes have
T11704 0-6 NN denotes Others
R8651 T11704 T11705 arg1Of Others,have
R8652 T11704 T11708 arg1Of Others,implicated
R8653 T11708 T11705 arg2Of implicated,have
R8654 T11708 T11706 arg1Of implicated,also
R8655 T11708 T11707 arg1Of implicated,recently
R8656 T11708 T11719 arg1Of implicated,[
R8657 T11711 T11708 arg2Of site,implicated
R8658 T11711 T11709 arg1Of site,this
R8659 T11711 T11710 arg1Of site,C/EBP
R8660 T11711 T11712 arg1Of site,in
R8661 T11714 T11712 arg2Of activation,in
R8662 T11714 T11713 arg1Of activation,LPS-induced
R8663 T11714 T11715 arg1Of activation,of
R8664 T11718 T11715 arg2Of gene,of
R8665 T11718 T11716 arg1Of gene,the
R8666 T11718 T11717 arg1Of gene,SerpinB2
R8667 T11720 T11719 arg2Of 58,[
R8668 T11721 T11719 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11524 86-94 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11881 86-94 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

sentences

Id Subject Object Predicate Lexical cue
T11447 0-105 Sentence denotes Others have also recently implicated this C/EBP site in LPS-induced activation of the SerpinB2 gene [58].
T162 0-105 Sentence denotes Others have also recently implicated this C/EBP site in LPS-induced activation of the SerpinB2 gene [58].

simple1

Id Subject Object Predicate Lexical cue
T11557 86-94 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T11865 68-78 Positive_regulation denotes activation
T11864 56-67 Positive_regulation denotes LPS-induced
T11857 86-94 Protein denotes SerpinB2
R8794 T11857 T11865 themeOf SerpinB2,activation
R8802 T11865 T11864 themeOf activation,LPS-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T11929 68-78 Positive_regulation denotes activation
T11921 86-94 Protein denotes SerpinB2
R8817 T11921 T11929 themeOf SerpinB2,activation

DLUT931

Id Subject Object Predicate Lexical cue
T11915 56-67 Positive_regulation denotes LPS-induced
T11914 68-78 Positive_regulation denotes activation
T11906 86-94 Protein denotes SerpinB2
R8810 T11906 T11914 themeOf SerpinB2,activation
R8814 T11914 T11915 themeOf activation,LPS-induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12044 7-99 Gene_expression denotes have also recently implicated this C/EBP site in LPS-induced activation of the SerpinB2 gene
T12039 56-99 Positive_regulation denotes LPS-induced activation of the SerpinB2 gene
T12034 86-94 Protein denotes SerpinB2
T12024 42-47 Protein denotes C/EBP
T12023 56-67 Entity denotes LPS-induced
T12013 79-99 Protein denotes of the SerpinB2 gene
T12001 37-52 Entity denotes this C/EBP site
R8842 T12013 T12039 themeOf of the SerpinB2 gene,LPS-induced activation of the SerpinB2 gene
R8843 T12024 T12044 themeOf C/EBP,have also recently implicated this C/EBP site in LPS-induced activation of the SerpinB2 gene

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11940 42-52 Protein denotes C/EBP site

testone

Id Subject Object Predicate Lexical cue
T11414 60-67 Positive_regulation denotes induced
T11405 86-94 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T11433 86-94 Protein denotes SerpinB2
T11432 68-78 Positive_regulation denotes activation
T11431 60-67 Positive_regulation denotes induced
T11420 86-94 Protein denotes SerpinB2
R8432 T11432 T11431 themeOf activation,induced
R8433 T11433 T11432 themeOf SerpinB2,activation