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PMC:3589482 / 252-526 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T839 273-274 CD denotes ∼
T838 270-272 IN denotes by
T837 268-269 -RRB- denotes )
T836 264-268 CD denotes TLR4
T835 263-264 -LRB- denotes (
T834 261-262 CD denotes 4
T833 252-260 NN denotes receptor
T832 242-251 JJ denotes toll-like
T831 238-241 DT denotes the
T830 234-237 IN denotes via
T829 223-233 NN denotes expression
T828 214-222 NNP denotes SerpinB2
T827 207-213 VB denotes induce
T826 203-206 MD denotes can
T825 201-202 , denotes ,
T824 192-201 NN denotes endotoxin
T823 182-191 JJ denotes bacterial
T822 175-181 JJ denotes potent
T821 173-174 DT denotes a
T820 171-172 , denotes ,
T819 170-171 -RRB- denotes )
T818 167-170 NNP denotes LPS
T817 166-167 -LRB- denotes (
T816 147-165 NNP denotes Lipopolysaccharide
T815 145-146 . denotes .
T814 135-145 NNS denotes activators
T813 123-134 NN denotes plasminogen
T812 120-122 IN denotes of
T811 109-119 NN denotes inhibition
T810 105-108 CC denotes and
T809 103-104 , denotes ,
T808 95-103 NN denotes survival
T807 84-94 NN denotes macrophage
T806 82-83 , denotes ,
T805 74-82 NN denotes immunity
T804 67-73 NN denotes innate
T803 64-66 IN denotes of
T802 53-63 NN denotes modulation
T801 49-52 DT denotes the
T800 46-48 TO denotes to
T799 39-45 VBN denotes linked
T798 36-38 VBZ denotes is
T797 32-35 CC denotes and
T796 24-31 NNS denotes stimuli
T795 11-23 JJ denotes inflammatory
T794 8-10 TO denotes to
R382 T795 T796 amod inflammatory,stimuli
R383 T796 T794 pobj stimuli,to
R385 T798 T799 auxpass is,linked
R387 T800 T799 prep to,linked
R388 T801 T802 det the,modulation
R389 T802 T800 pobj modulation,to
R390 T803 T802 prep of,modulation
R391 T804 T805 amod innate,immunity
R392 T805 T803 pobj immunity,of
R393 T806 T802 punct ",",modulation
R394 T807 T808 compound macrophage,survival
R395 T808 T802 conj survival,modulation
R396 T809 T808 punct ",",survival
R397 T810 T808 cc and,survival
R398 T811 T808 conj inhibition,survival
R399 T812 T811 prep of,inhibition
R400 T813 T814 compound plasminogen,activators
R401 T814 T812 pobj activators,of
R403 T816 T827 npadvmod Lipopolysaccharide,induce
R404 T817 T818 punct (,LPS
R405 T818 T816 appos LPS,Lipopolysaccharide
R406 T819 T816 punct ),Lipopolysaccharide
R407 T820 T816 punct ",",Lipopolysaccharide
R408 T821 T824 det a,endotoxin
R409 T822 T824 amod potent,endotoxin
R410 T823 T824 amod bacterial,endotoxin
R411 T824 T816 appos endotoxin,Lipopolysaccharide
R412 T825 T827 punct ",",induce
R413 T826 T827 aux can,induce
R414 T827 T827 ROOT induce,induce
R415 T828 T829 compound SerpinB2,expression
R416 T829 T827 dobj expression,induce
R417 T830 T827 prep via,induce
R418 T831 T833 det the,receptor
R419 T832 T833 amod toll-like,receptor
R420 T833 T830 pobj receptor,via
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor
R425 T838 T827 prep by,induce
R426 T839 T838 pobj ∼,by

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T267 64-66 IN denotes of
T266 53-63 NN denotes modulation
T265 49-52 DT denotes the
T264 46-48 TO denotes to
T263 39-45 VB denotes linked
T262 36-38 VB denotes is
T261 32-35 CC denotes and
T260 24-31 NN denotes stimuli
T259 11-23 JJ denotes inflammatory
T258 8-10 TO denotes to
T301 270-272 IN denotes by
T300 268-269 -RRB- denotes )
T299 264-268 NN denotes TLR4
T298 263-264 -LRB- denotes (
T297 261-262 CD denotes 4
T296 252-260 NN denotes receptor
T295 242-251 JJ denotes toll-like
T294 238-241 DT denotes the
T293 234-237 IN denotes via
T292 223-233 NN denotes expression
T291 214-222 NN denotes SerpinB2
T290 207-213 VB denotes induce
T289 203-206 MD denotes can
T288 201-202 -COMMA- denotes ,
T287 192-201 NN denotes endotoxin
T286 182-191 JJ denotes bacterial
T285 175-181 JJ denotes potent
T284 173-174 DT denotes a
T283 171-172 -COMMA- denotes ,
T282 170-171 -RRB- denotes )
T281 167-170 NN denotes LPS
T280 166-167 -LRB- denotes (
T279 147-165 NN denotes Lipopolysaccharide
T278 135-145 NN denotes activators
T277 123-134 NN denotes plasminogen
T276 120-122 IN denotes of
T275 109-119 NN denotes inhibition
T274 105-108 CC denotes and
T273 103-104 -COMMA- denotes ,
T272 95-103 NN denotes survival
T271 84-94 NN denotes macrophage
T270 82-83 -COMMA- denotes ,
T269 74-82 NN denotes immunity
T268 67-73 JJ denotes innate
R71 T260 T258 arg2Of stimuli,to
R72 T260 T259 arg1Of stimuli,inflammatory
R73 T263 T261 arg2Of linked,and
R74 T263 T262 arg2Of linked,is
R75 T263 T264 arg1Of linked,to
R76 T266 T264 arg2Of modulation,to
R77 T266 T265 arg1Of modulation,the
R78 T266 T267 arg1Of modulation,of
R79 T269 T268 arg1Of immunity,innate
R80 T269 T270 arg1Of immunity,","
R81 T270 T274 arg1Of ",",and
R82 T272 T270 arg2Of survival,","
R83 T272 T271 arg1Of survival,macrophage
R84 T274 T267 arg2Of and,of
R85 T274 T273 arg1Of and,","
R86 T275 T274 arg2Of inhibition,and
R87 T275 T276 arg1Of inhibition,of
R88 T278 T276 arg2Of activators,of
R89 T278 T277 arg1Of activators,plasminogen
R90 T279 T280 arg1Of Lipopolysaccharide,(
R91 T279 T283 arg1Of Lipopolysaccharide,","
R92 T279 T289 arg1Of Lipopolysaccharide,can
R93 T279 T290 arg1Of Lipopolysaccharide,induce
R94 T281 T280 arg2Of LPS,(
R95 T282 T280 arg3Of ),(
R96 T287 T283 arg2Of endotoxin,","
R97 T287 T284 arg1Of endotoxin,a
R98 T287 T285 arg1Of endotoxin,potent
R99 T287 T286 arg1Of endotoxin,bacterial
R100 T290 T288 arg1Of induce,","
R101 T290 T289 arg2Of induce,can
R102 T290 T293 arg1Of induce,via
R103 T290 T301 arg1Of induce,by
R105 T292 T290 arg2Of expression,induce
R106 T292 T291 arg1Of expression,SerpinB2
R107 T296 T293 arg2Of receptor,via
R108 T296 T294 arg1Of receptor,the
R109 T296 T295 arg1Of receptor,toll-like
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T162 214-222 Protein denotes SerpinB2
T163 242-262 Protein denotes toll-like receptor 4
T164 264-268 Protein denotes TLR4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 264-268 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T531 214-222 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T183 109-145 http://purl.obolibrary.org/obo/GO_0010757 denotes inhibition of plasminogen activators
T182 67-82 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immunity
T179 123-145 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activators

simple1

Id Subject Object Predicate Lexical cue
T215 214-222 Protein denotes SerpinB2
T216 242-262 Protein denotes toll-like receptor 4
T217 264-268 Protein denotes TLR4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T514 207-213 Positive_regulation denotes induce
T513 223-233 Gene_expression denotes expression
T498 264-268 Protein denotes TLR4
T496 214-222 Protein denotes SerpinB2
T497 242-262 Protein denotes toll-like receptor 4
R308 T513 T514 themeOf expression,induce
R680 T496 T513 themeOf SerpinB2,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T606 214-222 Protein denotes SerpinB2
T607 242-262 Protein denotes toll-like receptor 4
T608 264-268 Protein denotes TLR4
T623 223-233 Gene_expression denotes expression
T624 207-213 Positive_regulation denotes induce
R718 T606 T623 themeOf SerpinB2,expression
R720 T607 T624 causeOf toll-like receptor 4,induce
R733 T623 T624 themeOf expression,induce

DLUT931

Id Subject Object Predicate Lexical cue
T572 214-222 Protein denotes SerpinB2
T573 242-262 Protein denotes toll-like receptor 4
T574 264-268 Protein denotes TLR4
T590 223-233 Gene_expression denotes expression
T591 207-213 Positive_regulation denotes induce
R685 T572 T590 themeOf SerpinB2,expression
R686 T573 T591 causeOf toll-like receptor 4,induce
R693 T590 T591 themeOf expression,induce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T759 214-233 Gene_expression denotes SerpinB2 expression
T750 167-170 Entity denotes LPS
T748 214-222 Protein denotes SerpinB2
T705 84-94 Entity denotes macrophage
T709 147-172 Entity denotes Lipopolysaccharide (LPS),
T711 192-201 Entity denotes endotoxin
T714 238-269 Protein denotes the toll-like receptor 4 (TLR4)
T715 264-268 Protein denotes TLR4
T733 120-145 Entity denotes of plasminogen activators
T745 123-134 Protein denotes plasminogen
R348 T748 T759 themeOf SerpinB2,SerpinB2 expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T647 207-213 Positive_regulation denotes induce
T646 223-233 Gene_expression denotes expression
T645 214-222 Protein denotes SerpinB2
T644 109-119 Negative_regulation denotes inhibition
T641 123-145 Protein denotes plasminogen activators
R323 T641 T644 themeOf plasminogen activators,inhibition
R324 T645 T646 themeOf SerpinB2,expression
R325 T646 T647 themeOf expression,induce

testone

Id Subject Object Predicate Lexical cue
T40 223-233 Gene_expression denotes expression
T39 207-213 Positive_regulation denotes induce
T27 264-268 Protein denotes TLR4
T26 242-262 Protein denotes toll-like receptor 4
T25 214-222 Protein denotes SerpinB2
R3 T27 T26 equivalentTo TLR4,toll-like receptor 4
R8 T40 T39 themeOf expression,induce
R2 T25 T40 themeOf SerpinB2,expression

test3

Id Subject Object Predicate Lexical cue
T78 264-268 Protein denotes TLR4
T77 242-262 Protein denotes toll-like receptor 4
T76 223-233 Gene_expression denotes expression
T75 214-222 Protein denotes SerpinB2
T74 207-213 Positive_regulation denotes induce
T56 264-268 Protein denotes TLR4
T55 242-262 Protein denotes toll-like receptor 4
T54 214-222 Protein denotes SerpinB2
R17 T75 T76 themeOf SerpinB2,expression
R18 T76 T74 themeOf expression,induce
R19 T78 T77 equivalentTo TLR4,toll-like receptor 4