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PMC:3589482 / 25104-25273 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12173 168-169 . denotes .
T12172 160-168 NN denotes activity
T12171 151-159 NN denotes promoter
T12170 139-150 JJ denotes LPS-induced
T12169 130-138 VB denotes decrease
T12168 126-129 RB denotes not
T12167 122-125 VBD denotes did
T12166 117-121 NN denotes site
T12165 115-116 -RRB- denotes )
T12164 112-115 CD denotes 288
T12163 111-112 NN denotes −
T12162 110-111 CD denotes /
T12161 107-110 CD denotes 296
T12160 106-107 FW denotes −
T12159 105-106 -LRB- denotes (
T12158 99-104 NN denotes Oct-1
T12157 91-98 JJ denotes variant
T12156 87-90 DT denotes the
T12155 84-86 CC denotes or
T12154 82-83 , denotes ,
T12153 81-82 -RRB- denotes )
T12152 78-81 CD denotes 407
T12151 77-78 NN denotes −
T12150 76-77 CD denotes /
T12149 73-76 CD denotes 412
T12148 72-73 NN denotes −
T12147 71-72 -LRB- denotes (
T12146 68-70 CD denotes .1
T12145 66-68 NNP denotes PU
T12144 64-65 , denotes ,
T12143 63-64 -RRB- denotes )
T12142 60-63 CD denotes 533
T12141 59-60 NN denotes −
T12140 58-59 CD denotes /
T12139 55-58 CD denotes 538
T12138 54-55 FW denotes −
T12137 53-54 -LRB- denotes (
T12136 49-52 NN denotes box
T12135 47-48 NNP denotes E
T12134 37-46 NN denotes consensus
T12133 33-36 DT denotes the
T12132 30-32 IN denotes of
T12131 21-29 NN denotes mutation
T12130 19-20 , denotes ,
T12129 17-19 NNP denotes 4B
T12128 12-16 NNP denotes Fig.
T12127 9-11 IN denotes in
T12126 3-8 VBN denotes shown
T12125 0-2 IN denotes As
R8925 T12125 T12126 mark As,shown
R8926 T12126 T12169 advcl shown,decrease
R8927 T12127 T12126 prep in,shown
R8928 T12128 T12129 compound Fig.,4B
R8929 T12129 T12127 pobj 4B,in
R8930 T12130 T12129 punct ",",4B
R8931 T12131 T12129 appos mutation,4B
R8932 T12132 T12131 prep of,mutation
R8933 T12133 T12136 det the,box
R8934 T12134 T12136 compound consensus,box
R8935 T12135 T12136 compound E,box
R8936 T12136 T12132 pobj box,of
R8937 T12137 T12136 punct (,box
R8938 T12138 T12169 dep −,decrease
R8939 T12139 T12169 dep 538,decrease
R8940 T12140 T12169 dep /,decrease
R8941 T12141 T12169 dep −,decrease
R8942 T12142 T12141 nummod 533,−
R8943 T12143 T12141 punct ),−
R8944 T12144 T12146 punct ",",.1
R8945 T12145 T12146 compound PU,.1
R8946 T12146 T12141 appos .1,−
R8947 T12147 T12169 punct (,decrease
R8948 T12148 T12169 nsubj −,decrease
R8949 T12149 T12169 dep 412,decrease
R8950 T12150 T12169 dep /,decrease
R8951 T12151 T12169 nsubj −,decrease
R8952 T12152 T12151 nummod 407,−
R8953 T12153 T12151 punct ),−
R8954 T12154 T12151 punct ",",−
R8955 T12155 T12151 cc or,−
R8956 T12156 T12158 det the,Oct-1
R8957 T12157 T12158 compound variant,Oct-1
R8958 T12158 T12151 conj Oct-1,−
R8959 T12159 T12158 punct (,Oct-1
R8960 T12160 T12166 nmod −,site
R8961 T12161 T12162 compound 296,/
R8962 T12162 T12166 nummod /,site
R8963 T12163 T12166 nmod −,site
R8964 T12164 T12163 nummod 288,−
R8965 T12165 T12163 punct ),−
R8966 T12166 T12158 appos site,Oct-1
R8967 T12167 T12169 aux did,decrease
R8968 T12168 T12169 neg not,decrease
R8969 T12169 T12169 ROOT decrease,decrease
R8970 T12170 T12172 amod LPS-induced,activity
R8971 T12171 T12172 compound promoter,activity
R8972 T12172 T12169 dobj activity,decrease
R8973 T12173 T12169 punct .,decrease

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11675 160-168 NN denotes activity
T11674 151-159 NN denotes promoter
T11673 139-150 JJ denotes LPS-induced
T11672 130-138 VB denotes decrease
T11671 126-129 RB denotes not
T11670 122-125 VB denotes did
T11669 117-121 NN denotes site
T11668 115-116 -RRB- denotes )
T11667 106-115 CD denotes −296/−288
T11666 105-106 -LRB- denotes (
T11665 99-104 NN denotes Oct-1
T11664 91-98 JJ denotes variant
T11663 87-90 DT denotes the
T11662 84-86 CC denotes or
T11661 82-83 -COMMA- denotes ,
T11660 81-82 -RRB- denotes )
T11659 72-81 CD denotes −412/−407
T11658 71-72 -LRB- denotes (
T11657 66-70 NN denotes PU.1
T11656 64-65 -COMMA- denotes ,
T11655 63-64 -RRB- denotes )
T11654 54-63 CD denotes −538/−533
T11653 53-54 -LRB- denotes (
T11652 49-52 NN denotes box
T11651 47-48 NN denotes E
T11650 37-46 NN denotes consensus
T11649 33-36 DT denotes the
T11648 30-32 IN denotes of
T11647 21-29 NN denotes mutation
T11646 19-20 -COMMA- denotes ,
T11645 17-19 NN denotes 4B
T11644 12-16 NNP denotes Fig.
T11643 9-11 IN denotes in
T11642 3-8 VB denotes shown
T11641 0-2 IN denotes As
R8589 T11642 T11641 arg2Of shown,As
R8590 T11642 T11643 arg1Of shown,in
R8591 T11645 T11643 arg2Of 4B,in
R8592 T11645 T11644 arg1Of 4B,Fig.
R8593 T11647 T11648 arg1Of mutation,of
R8594 T11647 T11656 arg1Of mutation,","
R8595 T11652 T11648 arg2Of box,of
R8596 T11652 T11649 arg1Of box,the
R8597 T11652 T11650 arg1Of box,consensus
R8598 T11652 T11651 arg1Of box,E
R8599 T11652 T11653 arg1Of box,(
R8600 T11654 T11653 arg2Of −538/−533,(
R8601 T11655 T11653 arg3Of ),(
R8602 T11656 T11662 arg1Of ",",or
R8603 T11657 T11656 arg2Of PU.1,","
R8604 T11657 T11658 arg1Of PU.1,(
R8605 T11659 T11658 arg2Of −412/−407,(
R8606 T11660 T11658 arg3Of ),(
R8607 T11662 T11661 arg1Of or,","
R8608 T11662 T11670 arg1Of or,did
R8609 T11662 T11672 arg1Of or,decrease
R8610 T11665 T11663 arg1Of Oct-1,the
R8611 T11665 T11664 arg1Of Oct-1,variant
R8612 T11665 T11666 arg1Of Oct-1,(
R8613 T11667 T11666 arg2Of −296/−288,(
R8614 T11668 T11666 arg3Of ),(
R8615 T11669 T11662 arg2Of site,or
R8616 T11669 T11665 arg1Of site,Oct-1
R8617 T11672 T11641 arg1Of decrease,As
R8618 T11672 T11646 arg1Of decrease,","
R8619 T11672 T11670 arg2Of decrease,did
R8620 T11672 T11671 arg1Of decrease,not
R8621 T11675 T11672 arg2Of activity,decrease
R8622 T11675 T11673 arg1Of activity,LPS-induced
R8623 T11675 T11674 arg1Of activity,promoter

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11888 66-70 http://www.uniprot.org/uniprot/P17947 denotes PU.1

sentences

Id Subject Object Predicate Lexical cue
T11445 0-169 Sentence denotes As shown in Fig. 4B, mutation of the consensus E box (−538/−533), PU.1 (−412/−407), or the variant Oct-1 (−296/−288) site did not decrease LPS-induced promoter activity.
T160 0-169 Sentence denotes As shown in Fig. 4B, mutation of the consensus E box (−538/−533), PU.1 (−412/−407), or the variant Oct-1 (−296/−288) site did not decrease LPS-induced promoter activity.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12035 30-64 Entity denotes of the consensus E box (−538/−533)
T12018 99-116 Protein denotes Oct-1 (−296/−288)
T12010 151-159 Entity denotes promoter
T11999 66-82 Protein denotes PU.1 (−412/−407)
T11996 117-121 Entity denotes site
T11991 30-64 Entity denotes of the consensus E box (−538/−533)

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11938 99-104 Protein denotes Oct-1
T11937 12-15 Protein denotes Fig