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PMC:3589482 / 24689-25554 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12226 864-865 . denotes .
T12225 863-864 NNP denotes ]
T12224 861-863 CD denotes 58
T12223 860-861 NNP denotes [
T12222 855-859 NN denotes gene
T12221 846-854 NNP denotes SerpinB2
T12220 842-845 DT denotes the
T12219 839-841 IN denotes of
T12218 828-838 NN denotes activation
T12217 816-827 JJ denotes LPS-induced
T12216 813-815 IN denotes in
T12215 808-812 NN denotes site
T12214 802-807 NNP denotes C/EBP
T12213 797-801 DT denotes this
T12212 786-796 VBN denotes implicated
T12211 777-785 RB denotes recently
T12210 772-776 RB denotes also
T12209 767-771 VBP denotes have
T12208 760-766 NNS denotes Others
T12207 758-759 . denotes .
T12206 749-758 VBP denotes construct
T12205 740-748 NN denotes deletion
T12204 731-739 NN denotes promoter
T12203 722-730 CD denotes SerpinB2
T12202 718-721 CD denotes 189
T12201 717-718 NN denotes −
T12200 713-716 DT denotes the
T12199 709-712 IN denotes for
T12198 700-708 VBD denotes observed
T12197 693-699 NNS denotes levels
T12196 689-692 DT denotes the
T12195 686-688 TO denotes to
T12194 678-685 JJ denotes similar
T12193 676-677 , denotes ,
T12192 668-676 NN denotes activity
T12191 659-667 NN denotes promoter
T12190 648-658 VBN denotes eliminated
T12189 637-647 RB denotes completely
T12188 635-636 -RRB- denotes )
T12187 632-635 CD denotes 192
T12186 631-632 NN denotes −
T12185 630-631 CD denotes /
T12184 627-630 CD denotes 203
T12183 626-627 FW denotes −
T12182 625-626 -LRB- denotes (
T12181 620-624 NN denotes site
T12180 614-619 NNP denotes C/EBP
T12179 610-613 DT denotes the
T12178 607-609 IN denotes of
T12177 598-606 NN denotes mutation
T12176 596-597 , denotes ,
T12175 588-596 NN denotes contrast
T12174 585-587 IN denotes In
T12173 583-584 . denotes .
T12172 575-583 NN denotes activity
T12171 566-574 NN denotes promoter
T12170 554-565 JJ denotes LPS-induced
T12169 545-553 VB denotes decrease
T12168 541-544 RB denotes not
T12167 537-540 VBD denotes did
T12166 532-536 NN denotes site
T12165 530-531 -RRB- denotes )
T12164 527-530 CD denotes 288
T12163 526-527 NN denotes −
T12162 525-526 CD denotes /
T12161 522-525 CD denotes 296
T12160 521-522 FW denotes −
T12159 520-521 -LRB- denotes (
T12158 514-519 NN denotes Oct-1
T12157 506-513 JJ denotes variant
T12156 502-505 DT denotes the
T12155 499-501 CC denotes or
T12154 497-498 , denotes ,
T12153 496-497 -RRB- denotes )
T12152 493-496 CD denotes 407
T12151 492-493 NN denotes −
T12150 491-492 CD denotes /
T12149 488-491 CD denotes 412
T12148 487-488 NN denotes −
T12147 486-487 -LRB- denotes (
T12146 483-485 CD denotes .1
T12145 481-483 NNP denotes PU
T12144 479-480 , denotes ,
T12143 478-479 -RRB- denotes )
T12142 475-478 CD denotes 533
T12141 474-475 NN denotes −
T12140 473-474 CD denotes /
T12139 470-473 CD denotes 538
T12138 469-470 FW denotes −
T12137 468-469 -LRB- denotes (
T12136 464-467 NN denotes box
T12135 462-463 NNP denotes E
T12134 452-461 NN denotes consensus
T12133 448-451 DT denotes the
T12132 445-447 IN denotes of
T12131 436-444 NN denotes mutation
T12130 434-435 , denotes ,
T12129 432-434 NNP denotes 4B
T12128 427-431 NNP denotes Fig.
T12127 424-426 IN denotes in
T12126 418-423 VBN denotes shown
T12125 415-417 IN denotes As
T12124 413-414 . denotes .
T12123 412-413 -RRB- denotes )
T12122 410-412 NNP denotes 4A
T12121 405-409 NNP denotes Fig.
T12120 404-405 -LRB- denotes (
T12119 394-403 VBP denotes construct
T12118 389-393 NN denotes gene
T12117 380-388 NN denotes reporter
T12116 360-379 JJ denotes promoter-luciferase
T12115 351-359 NNP denotes SerpinB2
T12114 344-350 NN denotes murine
T12113 334-343 JJ denotes pGLmP-539
T12112 330-333 DT denotes the
T12111 327-329 TO denotes to
T12110 319-326 JJ denotes binding
T12109 312-318 NN denotes factor
T12108 298-311 NN denotes transcription
T12107 290-297 VB denotes disrupt
T12106 287-289 TO denotes to
T12105 278-286 VBN denotes designed
T12104 265-277 NN denotes substitution
T12103 254-264 NN denotes nucleotide
T12102 251-253 IN denotes by
T12101 242-250 VBN denotes targeted
T12100 237-241 VBD denotes were
T12099 235-236 NNP denotes ]
T12098 233-235 CD denotes 57
T12097 232-233 NNP denotes [
T12096 226-231 NNS denotes genes
T12095 220-225 JJ denotes other
T12094 217-219 IN denotes in
T12093 203-216 NN denotes transcription
T12092 189-202 JJ denotes LPS-inducible
T12091 181-188 VB denotes mediate
T12090 178-180 TO denotes to
T12089 169-177 VBD denotes reported
T12088 158-168 RB denotes previously
T12087 150-157 NNS denotes factors
T12086 136-149 NN denotes transcription
T12085 132-135 IN denotes for
T12084 126-131 NNS denotes sites
T12083 118-125 JJ denotes binding
T12082 108-117 NN denotes candidate
T12081 100-107 JJ denotes several
T12080 98-99 , denotes ,
T12079 85-98 NN denotes transcription
T12078 71-84 JJ denotes LPS-inducible
T12077 67-70 IN denotes for
T12076 57-66 JJ denotes essential
T12075 53-56 CD denotes 189
T12074 52-53 CD denotes −
T12073 48-51 CC denotes and
T12072 44-47 CD denotes 539
T12071 43-44 CD denotes −
T12070 35-42 IN denotes between
T12069 26-34 NNS denotes elements
T12068 15-25 JJ denotes regulatory
T12067 3-14 VB denotes investigate
T12066 0-2 TO denotes To
R8866 T12066 T12067 aux To,investigate
R8867 T12067 T12101 advcl investigate,targeted
R8868 T12068 T12069 amod regulatory,elements
R8869 T12069 T12067 dobj elements,investigate
R8870 T12070 T12069 prep between,elements
R8871 T12071 T12070 pobj −,between
R8872 T12072 T12071 conj 539,−
R8873 T12073 T12072 cc and,539
R8874 T12074 T12072 conj −,539
R8875 T12075 T12076 nummod 189,essential
R8876 T12076 T12071 conj essential,−
R8877 T12077 T12076 prep for,essential
R8878 T12078 T12079 amod LPS-inducible,transcription
R8879 T12079 T12077 pobj transcription,for
R8880 T12080 T12069 punct ",",elements
R8881 T12081 T12084 amod several,sites
R8882 T12082 T12084 nmod candidate,sites
R8883 T12083 T12084 amod binding,sites
R8884 T12084 T12069 conj sites,elements
R8885 T12085 T12084 prep for,sites
R8886 T12086 T12087 compound transcription,factors
R8887 T12087 T12085 pobj factors,for
R8888 T12088 T12089 advmod previously,reported
R8889 T12089 T12067 conj reported,investigate
R8890 T12090 T12091 aux to,mediate
R8891 T12091 T12089 xcomp mediate,reported
R8892 T12092 T12093 compound LPS-inducible,transcription
R8893 T12093 T12091 dobj transcription,mediate
R8894 T12094 T12093 prep in,transcription
R8895 T12095 T12096 amod other,genes
R8896 T12096 T12094 pobj genes,in
R8897 T12097 T12099 nmod [,]
R8898 T12098 T12099 nummod 57,]
R8899 T12099 T12101 nsubjpass ],targeted
R8900 T12100 T12101 auxpass were,targeted
R8901 T12101 T12101 ROOT targeted,targeted
R8902 T12102 T12101 agent by,targeted
R8903 T12103 T12104 compound nucleotide,substitution
R8904 T12104 T12102 pobj substitution,by
R8905 T12105 T12104 acl designed,substitution
R8906 T12106 T12107 aux to,disrupt
R8907 T12107 T12105 xcomp disrupt,designed
R8908 T12108 T12109 compound transcription,factor
R8909 T12109 T12107 dobj factor,disrupt
R8910 T12110 T12107 advmod binding,disrupt
R8911 T12111 T12110 prep to,binding
R8912 T12112 T12118 det the,gene
R8913 T12113 T12118 amod pGLmP-539,gene
R8914 T12114 T12118 nmod murine,gene
R8915 T12115 T12118 nmod SerpinB2,gene
R8916 T12116 T12118 amod promoter-luciferase,gene
R8917 T12117 T12118 compound reporter,gene
R8918 T12118 T12111 pobj gene,to
R8919 T12119 T12101 csubj construct,targeted
R8920 T12120 T12101 punct (,targeted
R8921 T12121 T12122 compound Fig.,4A
R8922 T12122 T12101 appos 4A,targeted
R8923 T12123 T12101 punct ),targeted
R8925 T12125 T12126 mark As,shown
R8926 T12126 T12169 advcl shown,decrease
R8927 T12127 T12126 prep in,shown
R8928 T12128 T12129 compound Fig.,4B
R8929 T12129 T12127 pobj 4B,in
R8930 T12130 T12129 punct ",",4B
R8931 T12131 T12129 appos mutation,4B
R8932 T12132 T12131 prep of,mutation
R8933 T12133 T12136 det the,box
R8934 T12134 T12136 compound consensus,box
R8935 T12135 T12136 compound E,box
R8936 T12136 T12132 pobj box,of
R8937 T12137 T12136 punct (,box
R8938 T12138 T12169 dep −,decrease
R8939 T12139 T12169 dep 538,decrease
R8940 T12140 T12169 dep /,decrease
R8941 T12141 T12169 dep −,decrease
R8942 T12142 T12141 nummod 533,−
R8943 T12143 T12141 punct ),−
R8944 T12144 T12146 punct ",",.1
R8945 T12145 T12146 compound PU,.1
R8946 T12146 T12141 appos .1,−
R8947 T12147 T12169 punct (,decrease
R8948 T12148 T12169 nsubj −,decrease
R8949 T12149 T12169 dep 412,decrease
R8950 T12150 T12169 dep /,decrease
R8951 T12151 T12169 nsubj −,decrease
R8952 T12152 T12151 nummod 407,−
R8953 T12153 T12151 punct ),−
R8954 T12154 T12151 punct ",",−
R8955 T12155 T12151 cc or,−
R8956 T12156 T12158 det the,Oct-1
R8957 T12157 T12158 compound variant,Oct-1
R8958 T12158 T12151 conj Oct-1,−
R8959 T12159 T12158 punct (,Oct-1
R8960 T12160 T12166 nmod −,site
R8961 T12161 T12162 compound 296,/
R8962 T12162 T12166 nummod /,site
R8963 T12163 T12166 nmod −,site
R8964 T12164 T12163 nummod 288,−
R8965 T12165 T12163 punct ),−
R8966 T12166 T12158 appos site,Oct-1
R8967 T12167 T12169 aux did,decrease
R8968 T12168 T12169 neg not,decrease
R8969 T12169 T12169 ROOT decrease,decrease
R8970 T12170 T12172 amod LPS-induced,activity
R8971 T12171 T12172 compound promoter,activity
R8972 T12172 T12169 dobj activity,decrease
R8973 T12173 T12169 punct .,decrease
R8974 T12174 T12206 prep In,construct
R8975 T12175 T12174 pobj contrast,In
R8976 T12176 T12206 punct ",",construct
R8977 T12177 T12206 nsubj mutation,construct
R8978 T12178 T12177 prep of,mutation
R8979 T12179 T12181 det the,site
R8980 T12180 T12181 compound C/EBP,site
R8981 T12181 T12178 pobj site,of
R8982 T12182 T12181 punct (,site
R8983 T12183 T12206 dep −,construct
R8984 T12184 T12206 nummod 203,construct
R8985 T12185 T12206 nummod /,construct
R8986 T12186 T12206 npadvmod −,construct
R8987 T12187 T12186 nummod 192,−
R8988 T12188 T12186 punct ),−
R8989 T12189 T12190 advmod completely,eliminated
R8990 T12190 T12206 amod eliminated,construct
R8991 T12191 T12192 compound promoter,activity
R8992 T12192 T12190 dobj activity,eliminated
R8993 T12193 T12192 punct ",",activity
R8994 T12194 T12192 amod similar,activity
R8995 T12195 T12194 prep to,similar
R8996 T12196 T12197 det the,levels
R8997 T12197 T12195 pobj levels,to
R8998 T12198 T12197 acl observed,levels
R8999 T12199 T12198 prep for,observed
R9000 T12200 T12205 det the,deletion
R9001 T12201 T12205 nmod −,deletion
R9002 T12202 T12201 nummod 189,−
R9003 T12203 T12205 nummod SerpinB2,deletion
R9004 T12204 T12205 compound promoter,deletion
R9005 T12205 T12199 pobj deletion,for
R9006 T12206 T12206 ROOT construct,construct
R9007 T12207 T12206 punct .,construct
R9008 T12208 T12212 nsubj Others,implicated
R9009 T12209 T12212 aux have,implicated
R9010 T12210 T12212 advmod also,implicated
R9011 T12211 T12212 advmod recently,implicated
R9012 T12212 T12212 ROOT implicated,implicated
R9013 T12213 T12215 det this,site
R9014 T12214 T12215 compound C/EBP,site
R9015 T12215 T12212 dobj site,implicated
R9016 T12216 T12212 prep in,implicated
R9017 T12217 T12218 amod LPS-induced,activation
R9018 T12218 T12216 pobj activation,in
R9019 T12219 T12218 prep of,activation
R9020 T12220 T12222 det the,gene
R9021 T12221 T12222 compound SerpinB2,gene
R9022 T12222 T12219 pobj gene,of
R9023 T12223 T12225 nmod [,]
R9024 T12224 T12225 nummod 58,]
R9025 T12225 T12212 npadvmod ],implicated
R9026 T12226 T12212 punct .,implicated

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11721 863-864 -RRB- denotes ]
T11720 861-863 CD denotes 58
T11719 860-861 -LRB- denotes [
T11718 855-859 NN denotes gene
T11717 846-854 NN denotes SerpinB2
T11716 842-845 DT denotes the
T11715 839-841 IN denotes of
T11714 828-838 NN denotes activation
T11713 816-827 JJ denotes LPS-induced
T11712 813-815 IN denotes in
T11711 808-812 NN denotes site
T11710 802-807 NN denotes C/EBP
T11709 797-801 DT denotes this
T11708 786-796 VB denotes implicated
T11707 777-785 RB denotes recently
T11706 772-776 RB denotes also
T11705 767-771 VB denotes have
T11704 760-766 NN denotes Others
T11703 749-758 NN denotes construct
T11702 740-748 NN denotes deletion
T11701 731-739 NN denotes promoter
T11700 722-730 NN denotes SerpinB2
T11699 717-721 CD denotes −189
T11698 713-716 DT denotes the
T11697 709-712 IN denotes for
T11696 700-708 VB denotes observed
T11695 693-699 NN denotes levels
T11694 689-692 DT denotes the
T11693 686-688 TO denotes to
T11692 678-685 JJ denotes similar
T11691 676-677 -COMMA- denotes ,
T11690 668-676 NN denotes activity
T11689 659-667 NN denotes promoter
T11688 648-658 VB denotes eliminated
T11687 637-647 RB denotes completely
T11686 635-636 -RRB- denotes )
T11685 626-635 NN denotes −203/−192
T11684 625-626 -LRB- denotes (
T11683 620-624 NN denotes site
T11682 614-619 NN denotes C/EBP
T11681 610-613 DT denotes the
T11680 607-609 IN denotes of
T11679 598-606 NN denotes mutation
T11678 596-597 -COMMA- denotes ,
T11677 588-596 NN denotes contrast
T11676 585-587 IN denotes In
T11675 575-583 NN denotes activity
T11674 566-574 NN denotes promoter
T11673 554-565 JJ denotes LPS-induced
T11672 545-553 VB denotes decrease
T11671 541-544 RB denotes not
T11670 537-540 VB denotes did
T11669 532-536 NN denotes site
T11668 530-531 -RRB- denotes )
T11667 521-530 CD denotes −296/−288
T11666 520-521 -LRB- denotes (
T11665 514-519 NN denotes Oct-1
T11664 506-513 JJ denotes variant
T11663 502-505 DT denotes the
T11662 499-501 CC denotes or
T11661 497-498 -COMMA- denotes ,
T11660 496-497 -RRB- denotes )
T11659 487-496 CD denotes −412/−407
T11658 486-487 -LRB- denotes (
T11657 481-485 NN denotes PU.1
T11656 479-480 -COMMA- denotes ,
T11655 478-479 -RRB- denotes )
T11654 469-478 CD denotes −538/−533
T11653 468-469 -LRB- denotes (
T11652 464-467 NN denotes box
T11651 462-463 NN denotes E
T11650 452-461 NN denotes consensus
T11649 448-451 DT denotes the
T11648 445-447 IN denotes of
T11647 436-444 NN denotes mutation
T11646 434-435 -COMMA- denotes ,
T11645 432-434 NN denotes 4B
T11644 427-431 NNP denotes Fig.
T11643 424-426 IN denotes in
T11642 418-423 VB denotes shown
T11641 415-417 IN denotes As
T11640 412-413 -RRB- denotes )
T11639 410-412 NN denotes 4A
T11638 405-409 NN denotes Fig.
T11637 404-405 -LRB- denotes (
T11636 394-403 NN denotes construct
T11635 389-393 NN denotes gene
T11634 380-388 NN denotes reporter
T11633 360-379 NN denotes promoter-luciferase
T11632 351-359 NN denotes SerpinB2
T11631 344-350 JJ denotes murine
T11630 334-343 NN denotes pGLmP-539
T11629 330-333 DT denotes the
T11628 327-329 TO denotes to
T11627 319-326 VB denotes binding
T11626 312-318 NN denotes factor
T11625 298-311 NN denotes transcription
T11624 290-297 VB denotes disrupt
T11623 287-289 TO denotes to
T11622 278-286 VB denotes designed
T11621 265-277 NN denotes substitution
T11620 254-264 NN denotes nucleotide
T11619 251-253 IN denotes by
T11618 242-250 VB denotes targeted
T11617 237-241 VB denotes were
T11616 235-236 -RRB- denotes ]
T11615 233-235 CD denotes 57
T11614 232-233 -LRB- denotes [
T11613 226-231 NN denotes genes
T11612 220-225 JJ denotes other
T11611 217-219 IN denotes in
T11610 203-216 NN denotes transcription
T11609 189-202 JJ denotes LPS-inducible
T11608 181-188 VB denotes mediate
T11607 178-180 TO denotes to
T11606 169-177 VB denotes reported
T11605 158-168 RB denotes previously
T11604 150-157 NN denotes factors
T11603 136-149 NN denotes transcription
T11602 132-135 IN denotes for
T11601 126-131 NN denotes sites
T11600 118-125 NN denotes binding
T11599 108-117 NN denotes candidate
T11598 100-107 JJ denotes several
T11597 98-99 -COMMA- denotes ,
T11596 85-98 NN denotes transcription
T11595 71-84 JJ denotes LPS-inducible
T11594 67-70 IN denotes for
T11593 57-66 JJ denotes essential
T11592 52-56 CD denotes −189
T11591 48-51 CC denotes and
T11590 43-47 CD denotes −539
T11589 35-42 IN denotes between
T11588 26-34 NN denotes elements
T11587 15-25 JJ denotes regulatory
T11586 3-14 VB denotes investigate
T11585 0-2 TO denotes To
R8532 T11586 T11585 arg1Of investigate,To
R8533 T11588 T11586 arg2Of elements,investigate
R8534 T11588 T11587 arg1Of elements,regulatory
R8535 T11588 T11589 arg1Of elements,between
R8536 T11590 T11591 arg1Of −539,and
R8537 T11591 T11589 arg2Of and,between
R8538 T11591 T11593 arg1Of and,essential
R8539 T11592 T11591 arg2Of −189,and
R8540 T11593 T11594 arg1Of essential,for
R8541 T11596 T11594 arg2Of transcription,for
R8542 T11596 T11595 arg1Of transcription,LPS-inducible
R8543 T11601 T11598 arg1Of sites,several
R8544 T11601 T11599 arg1Of sites,candidate
R8545 T11601 T11600 arg1Of sites,binding
R8546 T11601 T11602 arg1Of sites,for
R8547 T11601 T11617 arg1Of sites,were
R8548 T11601 T11618 arg2Of sites,targeted
R8549 T11604 T11602 arg2Of factors,for
R8550 T11604 T11603 arg1Of factors,transcription
R8551 T11604 T11606 arg2Of factors,reported
R8552 T11604 T11608 arg1Of factors,mediate
R8553 T11606 T11605 arg1Of reported,previously
R8554 T11608 T11606 arg3Of mediate,reported
R8555 T11608 T11607 arg1Of mediate,to
R8556 T11608 T11614 arg1Of mediate,[
R8557 T11610 T11608 arg2Of transcription,mediate
R8558 T11610 T11609 arg1Of transcription,LPS-inducible
R8559 T11610 T11611 arg1Of transcription,in
R8560 T11613 T11611 arg2Of genes,in
R8561 T11613 T11612 arg1Of genes,other
R8562 T11615 T11614 arg2Of 57,[
R8563 T11616 T11614 arg3Of ],[
R8564 T11618 T11585 modOf targeted,To
R8565 T11618 T11597 arg1Of targeted,","
R8566 T11618 T11617 arg2Of targeted,were
R8567 T11621 T11618 arg1Of substitution,targeted
R8568 T11621 T11619 arg2Of substitution,by
R8569 T11621 T11620 arg1Of substitution,nucleotide
R8570 T11621 T11622 arg2Of substitution,designed
R8571 T11622 T11623 modOf designed,to
R8572 T11624 T11623 arg1Of disrupt,to
R8573 T11626 T11624 arg2Of factor,disrupt
R8574 T11626 T11625 arg1Of factor,transcription
R8575 T11626 T11627 arg1Of factor,binding
R8576 T11627 T11628 arg1Of binding,to
R8577 T11636 T11628 arg2Of construct,to
R8578 T11636 T11629 arg1Of construct,the
R8579 T11636 T11630 arg1Of construct,pGLmP-539
R8580 T11636 T11631 arg1Of construct,murine
R8581 T11636 T11632 arg1Of construct,SerpinB2
R8582 T11636 T11633 arg1Of construct,promoter-luciferase
R8583 T11636 T11634 arg1Of construct,reporter
R8584 T11636 T11635 arg1Of construct,gene
R8585 T11636 T11637 arg1Of construct,(
R8586 T11639 T11637 arg2Of 4A,(
R8587 T11639 T11638 arg1Of 4A,Fig.
R8588 T11640 T11637 arg3Of ),(
R8589 T11642 T11641 arg2Of shown,As
R8590 T11642 T11643 arg1Of shown,in
R8591 T11645 T11643 arg2Of 4B,in
R8592 T11645 T11644 arg1Of 4B,Fig.
R8593 T11647 T11648 arg1Of mutation,of
R8594 T11647 T11656 arg1Of mutation,","
R8595 T11652 T11648 arg2Of box,of
R8596 T11652 T11649 arg1Of box,the
R8597 T11652 T11650 arg1Of box,consensus
R8598 T11652 T11651 arg1Of box,E
R8599 T11652 T11653 arg1Of box,(
R8600 T11654 T11653 arg2Of −538/−533,(
R8601 T11655 T11653 arg3Of ),(
R8602 T11656 T11662 arg1Of ",",or
R8603 T11657 T11656 arg2Of PU.1,","
R8604 T11657 T11658 arg1Of PU.1,(
R8605 T11659 T11658 arg2Of −412/−407,(
R8606 T11660 T11658 arg3Of ),(
R8607 T11662 T11661 arg1Of or,","
R8608 T11662 T11670 arg1Of or,did
R8609 T11662 T11672 arg1Of or,decrease
R8610 T11665 T11663 arg1Of Oct-1,the
R8611 T11665 T11664 arg1Of Oct-1,variant
R8612 T11665 T11666 arg1Of Oct-1,(
R8613 T11667 T11666 arg2Of −296/−288,(
R8614 T11668 T11666 arg3Of ),(
R8615 T11669 T11662 arg2Of site,or
R8616 T11669 T11665 arg1Of site,Oct-1
R8617 T11672 T11641 arg1Of decrease,As
R8618 T11672 T11646 arg1Of decrease,","
R8619 T11672 T11670 arg2Of decrease,did
R8620 T11672 T11671 arg1Of decrease,not
R8621 T11675 T11672 arg2Of activity,decrease
R8622 T11675 T11673 arg1Of activity,LPS-induced
R8623 T11675 T11674 arg1Of activity,promoter
R8624 T11677 T11676 arg2Of contrast,In
R8625 T11679 T11680 arg1Of mutation,of
R8626 T11679 T11688 arg1Of mutation,eliminated
R8627 T11683 T11680 arg2Of site,of
R8628 T11683 T11681 arg1Of site,the
R8629 T11683 T11682 arg1Of site,C/EBP
R8630 T11683 T11684 arg1Of site,(
R8631 T11685 T11684 arg2Of −203/−192,(
R8632 T11686 T11684 arg3Of ),(
R8633 T11688 T11676 arg1Of eliminated,In
R8634 T11688 T11678 arg1Of eliminated,","
R8635 T11688 T11687 arg1Of eliminated,completely
R8636 T11690 T11688 arg2Of activity,eliminated
R8637 T11690 T11689 arg1Of activity,promoter
R8638 T11690 T11691 arg1Of activity,","
R8639 T11690 T11692 arg1Of activity,similar
R8640 T11692 T11693 arg1Of similar,to
R8641 T11695 T11693 arg2Of levels,to
R8642 T11695 T11694 arg1Of levels,the
R8643 T11695 T11696 arg2Of levels,observed
R8644 T11696 T11697 arg1Of observed,for
R8645 T11703 T11697 arg2Of construct,for
R8646 T11703 T11698 arg1Of construct,the
R8647 T11703 T11699 arg1Of construct,−189
R8648 T11703 T11700 arg1Of construct,SerpinB2
R8649 T11703 T11701 arg1Of construct,promoter
R8650 T11703 T11702 arg1Of construct,deletion
R8651 T11704 T11705 arg1Of Others,have
R8652 T11704 T11708 arg1Of Others,implicated
R8653 T11708 T11705 arg2Of implicated,have
R8654 T11708 T11706 arg1Of implicated,also
R8655 T11708 T11707 arg1Of implicated,recently
R8656 T11708 T11719 arg1Of implicated,[
R8657 T11711 T11708 arg2Of site,implicated
R8658 T11711 T11709 arg1Of site,this
R8659 T11711 T11710 arg1Of site,C/EBP
R8660 T11711 T11712 arg1Of site,in
R8661 T11714 T11712 arg2Of activation,in
R8662 T11714 T11713 arg1Of activation,LPS-induced
R8663 T11714 T11715 arg1Of activation,of
R8664 T11718 T11715 arg2Of gene,of
R8665 T11718 T11716 arg1Of gene,the
R8666 T11718 T11717 arg1Of gene,SerpinB2
R8667 T11720 T11719 arg2Of 58,[
R8668 T11721 T11719 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11524 846-854 Protein denotes SerpinB2
T11523 722-730 Protein denotes SerpinB2
T11522 351-393 Protein denotes SerpinB2 promoter-luciferase reporter gene

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11888 481-485 http://www.uniprot.org/uniprot/P17947 denotes PU.1
T11886 369-379 http://www.uniprot.org/uniprot/P08659 denotes luciferase
T11881 846-854 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T11880 722-730 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T11879 351-359 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T11535 298-311 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T11534 203-216 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T11533 136-149 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T11532 85-98 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T11548 298-326 http://purl.obolibrary.org/obo/GO_0070491 denotes transcription factor binding
T11547 298-326 http://purl.obolibrary.org/obo/GO_0043425 denotes transcription factor binding
T11546 298-326 http://purl.obolibrary.org/obo/GO_0033613 denotes transcription factor binding
T11545 298-326 http://purl.obolibrary.org/obo/GO_0008134 denotes transcription factor binding
T11544 319-326 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T11543 118-125 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T11447 760-865 Sentence denotes Others have also recently implicated this C/EBP site in LPS-induced activation of the SerpinB2 gene [58].
T11446 585-759 Sentence denotes In contrast, mutation of the C/EBP site (−203/−192) completely eliminated promoter activity, similar to the levels observed for the −189 SerpinB2 promoter deletion construct.
T11445 415-584 Sentence denotes As shown in Fig. 4B, mutation of the consensus E box (−538/−533), PU.1 (−412/−407), or the variant Oct-1 (−296/−288) site did not decrease LPS-induced promoter activity.
T11444 0-414 Sentence denotes To investigate regulatory elements between −539 and −189 essential for LPS-inducible transcription, several candidate binding sites for transcription factors previously reported to mediate LPS-inducible transcription in other genes [57] were targeted by nucleotide substitution designed to disrupt transcription factor binding to the pGLmP-539 murine SerpinB2 promoter-luciferase reporter gene construct (Fig. 4A).
T159 0-414 Sentence denotes To investigate regulatory elements between −539 and −189 essential for LPS-inducible transcription, several candidate binding sites for transcription factors previously reported to mediate LPS-inducible transcription in other genes [57] were targeted by nucleotide substitution designed to disrupt transcription factor binding to the pGLmP-539 murine SerpinB2 promoter-luciferase reporter gene construct (Fig. 4A).
T160 415-584 Sentence denotes As shown in Fig. 4B, mutation of the consensus E box (−538/−533), PU.1 (−412/−407), or the variant Oct-1 (−296/−288) site did not decrease LPS-induced promoter activity.
T161 585-759 Sentence denotes In contrast, mutation of the C/EBP site (−203/−192) completely eliminated promoter activity, similar to the levels observed for the −189 SerpinB2 promoter deletion construct.
T162 760-865 Sentence denotes Others have also recently implicated this C/EBP site in LPS-induced activation of the SerpinB2 gene [58].

simple1

Id Subject Object Predicate Lexical cue
T11557 846-854 Protein denotes SerpinB2
T11556 722-730 Protein denotes SerpinB2
T11555 351-393 Protein denotes SerpinB2 promoter-luciferase reporter gene

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T11865 828-838 Positive_regulation denotes activation
T11864 816-827 Positive_regulation denotes LPS-induced
T11857 846-854 Protein denotes SerpinB2
T11856 722-730 Protein denotes SerpinB2
T11855 351-393 Protein denotes SerpinB2 promoter-luciferase reporter gene
R8794 T11857 T11865 themeOf SerpinB2,activation
R8802 T11865 T11864 themeOf activation,LPS-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T11929 828-838 Positive_regulation denotes activation
T11928 319-326 Binding denotes binding
T11921 846-854 Protein denotes SerpinB2
T11920 722-730 Protein denotes SerpinB2
T11919 351-393 Protein denotes SerpinB2 promoter-luciferase reporter gene
R8816 T11919 T11928 themeOf SerpinB2 promoter-luciferase reporter gene,binding
R8817 T11921 T11929 themeOf SerpinB2,activation

DLUT931

Id Subject Object Predicate Lexical cue
T11915 816-827 Positive_regulation denotes LPS-induced
T11914 828-838 Positive_regulation denotes activation
T11913 319-326 Binding denotes binding
T11906 846-854 Protein denotes SerpinB2
T11905 722-730 Protein denotes SerpinB2
T11904 351-393 Protein denotes SerpinB2 promoter-luciferase reporter gene
R8809 T11904 T11913 themeOf SerpinB2 promoter-luciferase reporter gene,binding
R8810 T11906 T11914 themeOf SerpinB2,activation
R8814 T11914 T11915 themeOf activation,LPS-induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12044 767-859 Gene_expression denotes have also recently implicated this C/EBP site in LPS-induced activation of the SerpinB2 gene
T12040 126-236 Regulation denotes sites for transcription factors previously reported to mediate LPS-inducible transcription in other genes [57]
T12039 816-859 Positive_regulation denotes LPS-induced activation of the SerpinB2 gene
T12038 722-730 Protein denotes SerpinB2
T12036 713-748 Entity denotes the −189 SerpinB2 promoter deletion
T12035 445-479 Entity denotes of the consensus E box (−538/−533)
T12034 846-854 Protein denotes SerpinB2
T12029 659-667 Entity denotes promoter
T12024 802-807 Protein denotes C/EBP
T12023 816-827 Entity denotes LPS-induced
T12021 330-339 Protein denotes the pGLmP
T12018 514-531 Protein denotes Oct-1 (−296/−288)
T12013 839-859 Protein denotes of the SerpinB2 gene
T12011 220-236 Protein denotes other genes [57]
T12010 566-574 Entity denotes promoter
T12001 797-812 Entity denotes this C/EBP site
T12000 405-408 Protein denotes Fig
T11999 481-497 Protein denotes PU.1 (−412/−407)
T11996 532-536 Entity denotes site
T11993 254-264 Entity denotes nucleotide
T11992 614-619 Protein denotes C/EBP
T11991 445-479 Entity denotes of the consensus E box (−538/−533)
T11989 351-393 Protein denotes SerpinB2 promoter-luciferase reporter gene
T11987 607-624 Entity denotes of the C/EBP site
T11984 126-236 Entity denotes sites for transcription factors previously reported to mediate LPS-inducible transcription in other genes [57]
R8839 T11984 T12040 causeOf sites for transcription factors previously reported to mediate LPS-inducible transcription in other genes [57],sites for transcription factors previously reported to mediate LPS-inducible transcription in other genes [57]
R8842 T12013 T12039 themeOf of the SerpinB2 gene,LPS-induced activation of the SerpinB2 gene
R8843 T12024 T12044 themeOf C/EBP,have also recently implicated this C/EBP site in LPS-induced activation of the SerpinB2 gene

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11940 802-812 Protein denotes C/EBP site
T11939 614-624 Protein denotes C/EBP site
T11938 514-519 Protein denotes Oct-1
T11937 427-430 Protein denotes Fig
T11936 319-326 Binding denotes binding
T11935 405-412 Protein denotes Fig. 4A
T11934 369-379 Protein denotes luciferase
T11933 334-368 Protein denotes pGLmP-539 murine SerpinB2 promoter
R8820 T11934 T11936 themeOf luciferase,binding

testone

Id Subject Object Predicate Lexical cue
T11414 820-827 Positive_regulation denotes induced
T11413 620-624 Entity denotes site
T11412 319-326 Binding denotes binding
T11405 846-854 Protein denotes SerpinB2
T11404 722-730 Protein denotes SerpinB2
T11403 351-393 Protein denotes SerpinB2 promoter-luciferase reporter gene
R8428 T11403 T11412 themeOf SerpinB2 promoter-luciferase reporter gene,binding

test3

Id Subject Object Predicate Lexical cue
T11433 846-854 Protein denotes SerpinB2
T11432 828-838 Positive_regulation denotes activation
T11431 820-827 Positive_regulation denotes induced
T11430 722-730 Protein denotes SerpinB2
T11429 351-393 Protein denotes SerpinB2 promoter-luciferase reporter gene
T11428 319-326 Binding denotes binding
T11420 846-854 Protein denotes SerpinB2
T11419 722-730 Protein denotes SerpinB2
T11418 351-393 Protein denotes SerpinB2 promoter-luciferase reporter gene
R8431 T11429 T11428 themeOf SerpinB2 promoter-luciferase reporter gene,binding
R8432 T11432 T11431 themeOf activation,induced
R8433 T11433 T11432 themeOf SerpinB2,activation