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PMC:3589482 / 23645-23849 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11381 203-204 . denotes .
T11380 202-203 NNP denotes ]
T11379 200-202 CD denotes 56
T11378 199-200 NNP denotes [
T11377 197-198 : denotes ;
T11376 196-197 NNP denotes ]
T11375 194-196 CD denotes 30
T11374 193-194 NNP denotes [
T11373 191-192 : denotes ;
T11372 190-191 NNP denotes ]
T11371 188-190 CD denotes 16
T11370 187-188 NNP denotes [
T11369 177-186 VBN denotes conserved
T11368 172-176 RB denotes well
T11367 167-171 RB denotes also
T11366 163-166 VBP denotes are
T11365 161-162 -RRB- denotes )
T11364 159-161 CD denotes S2
T11363 157-158 . denotes .
T11362 154-157 NN denotes Fig
T11361 153-154 -LRB- denotes (
T11360 148-152 CD denotes 1351
T11359 147-148 NN denotes −
T11358 146-147 NN denotes /
T11357 142-146 CD denotes 1342
T11356 141-142 CD denotes −
T11355 138-140 IN denotes at
T11354 133-137 NN denotes site
T11353 125-132 JJ denotes binding
T11352 121-124 CD denotes p65
T11351 115-120 NNP denotes NF-κB
T11350 113-114 DT denotes a
T11349 109-112 CC denotes and
T11348 104-108 CD denotes 1528
T11347 103-104 NN denotes −
T11346 102-103 NN denotes /
T11345 98-102 CD denotes 1540
T11344 97-98 CD denotes −
T11343 94-96 IN denotes at
T11342 86-93 NN denotes element
T11341 77-85 NN denotes silencer
T11340 69-76 NN denotes PAUSE-1
T11339 67-68 DT denotes a
T11338 65-66 , denotes ,
T11337 61-65 CD denotes 1340
T11336 60-61 NN denotes −
T11335 59-60 NN denotes /
T11334 55-59 CD denotes 1349
T11333 54-55 CD denotes −
T11332 51-53 IN denotes at
T11331 43-50 NN denotes element
T11330 34-42 NN denotes response
T11329 29-33 NN denotes acid
T11328 20-28 JJ denotes retinoic
T11327 18-19 DT denotes a
T11326 16-17 , denotes ,
T11325 8-16 JJ denotes upstream
T11324 0-7 JJ denotes Further
R8370 T11324 T11325 amod Further,upstream
R8371 T11325 T11325 ROOT upstream,upstream
R8372 T11326 T11325 punct ",",upstream
R8373 T11327 T11331 det a,element
R8374 T11328 T11331 amod retinoic,element
R8375 T11329 T11330 compound acid,response
R8376 T11330 T11331 compound response,element
R8377 T11331 T11325 appos element,upstream
R8378 T11332 T11331 prep at,element
R8379 T11333 T11334 nummod −,1349
R8380 T11334 T11332 pobj 1349,at
R8381 T11335 T11336 compound /,−
R8382 T11336 T11331 nmod −,element
R8383 T11337 T11336 appos 1340,−
R8384 T11338 T11336 punct ",",−
R8385 T11339 T11342 det a,element
R8386 T11340 T11342 compound PAUSE-1,element
R8387 T11341 T11342 compound silencer,element
R8388 T11342 T11336 appos element,−
R8389 T11343 T11342 prep at,element
R8390 T11344 T11345 nummod −,1540
R8391 T11345 T11343 pobj 1540,at
R8392 T11346 T11347 compound /,−
R8393 T11347 T11342 nmod −,element
R8394 T11348 T11347 nummod 1528,−
R8395 T11349 T11347 cc and,−
R8396 T11350 T11354 det a,site
R8397 T11351 T11354 nmod NF-κB,site
R8398 T11352 T11354 nummod p65,site
R8399 T11353 T11354 amod binding,site
R8400 T11354 T11347 conj site,−
R8401 T11355 T11354 prep at,site
R8402 T11356 T11360 nummod −,1351
R8403 T11357 T11358 nummod 1342,/
R8404 T11358 T11359 compound /,−
R8405 T11359 T11360 compound −,1351
R8406 T11360 T11355 pobj 1351,at
R8407 T11361 T11362 punct (,Fig
R8408 T11362 T11354 appos Fig,site
R8409 T11363 T11362 punct .,Fig
R8410 T11364 T11362 nummod S2,Fig
R8411 T11365 T11362 punct ),Fig
R8412 T11366 T11369 auxpass are,conserved
R8413 T11367 T11369 advmod also,conserved
R8414 T11368 T11369 advmod well,conserved
R8415 T11369 T11325 conj conserved,upstream
R8416 T11370 T11372 nmod [,]
R8417 T11371 T11372 nummod 16,]
R8418 T11372 T11369 dobj ],conserved
R8419 T11373 T11372 punct ;,]
R8420 T11374 T11376 nmod [,]
R8421 T11375 T11376 nummod 30,]
R8422 T11376 T11372 conj ],]
R8423 T11377 T11376 punct ;,]
R8424 T11378 T11376 conj [,]
R8425 T11379 T11380 nummod 56,]
R8426 T11380 T11376 conj ],]
R8427 T11381 T11369 punct .,conserved

2_test

Id Subject Object Predicate Lexical cue
23472114-8916932-87899181 194-196 8916932 denotes 30
T61298 194-196 8916932 denotes 30

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10812 202-203 -RRB- denotes ]
T10811 200-202 CD denotes 56
T10810 199-200 -LRB- denotes [
T10809 197-198 -COLON- denotes ;
T10808 196-197 -RRB- denotes ]
T10807 194-196 CD denotes 30
T10806 193-194 -LRB- denotes [
T10805 191-192 -COLON- denotes ;
T10804 190-191 -RRB- denotes ]
T10803 188-190 CD denotes 16
T10802 187-188 -LRB- denotes [
T10801 177-186 VB denotes conserved
T10800 172-176 RB denotes well
T10799 167-171 RB denotes also
T10798 163-166 VB denotes are
T10797 161-162 -RRB- denotes )
T10796 159-161 NN denotes S2
T10795 154-158 NNP denotes Fig.
T10794 153-154 -LRB- denotes (
T10793 141-152 CD denotes −1342/−1351
T10792 138-140 IN denotes at
T10791 133-137 NN denotes site
T10790 125-132 NN denotes binding
T10789 121-124 NN denotes p65
T10788 115-120 NN denotes NF-κB
T10787 113-114 DT denotes a
T10786 109-112 CC denotes and
T10785 97-108 CD denotes −1540/−1528
T10784 94-96 IN denotes at
T10783 86-93 NN denotes element
T10782 77-85 NN denotes silencer
T10781 69-76 NN denotes PAUSE-1
T10780 67-68 DT denotes a
T10779 65-66 -COMMA- denotes ,
T10778 54-65 CD denotes −1349/−1340
T10777 51-53 IN denotes at
T10776 43-50 NN denotes element
T10775 34-42 NN denotes response
T10774 29-33 NN denotes acid
T10773 20-28 JJ denotes retinoic
T10772 18-19 DT denotes a
T10771 16-17 -COMMA- denotes ,
T10770 8-16 RB denotes upstream
T10769 0-7 RB denotes Further
R7940 T10770 T10771 arg1Of upstream,","
R7941 T10776 T10771 arg2Of element,","
R7942 T10776 T10772 arg1Of element,a
R7943 T10776 T10773 arg1Of element,retinoic
R7944 T10776 T10774 arg1Of element,acid
R7945 T10776 T10775 arg1Of element,response
R7946 T10777 T10770 arg1Of at,upstream
R7947 T10778 T10777 arg2Of −1349/−1340,at
R7948 T10783 T10780 arg1Of element,a
R7949 T10783 T10781 arg1Of element,PAUSE-1
R7950 T10783 T10782 arg1Of element,silencer
R7951 T10783 T10784 arg1Of element,at
R7952 T10783 T10786 arg1Of element,and
R7953 T10785 T10784 arg2Of −1540/−1528,at
R7954 T10786 T10798 arg1Of and,are
R7955 T10786 T10801 arg2Of and,conserved
R7956 T10791 T10786 arg2Of site,and
R7957 T10791 T10787 arg1Of site,a
R7958 T10791 T10788 arg1Of site,NF-κB
R7959 T10791 T10789 arg1Of site,p65
R7960 T10791 T10790 arg1Of site,binding
R7961 T10791 T10792 arg1Of site,at
R7962 T10793 T10792 arg2Of −1342/−1351,at
R7963 T10793 T10794 arg1Of −1342/−1351,(
R7964 T10796 T10794 arg2Of S2,(
R7965 T10796 T10795 arg1Of S2,Fig.
R7966 T10797 T10794 arg3Of ),(
R7967 T10801 T10769 arg1Of conserved,Further
R7968 T10801 T10777 arg1Of conserved,at
R7969 T10801 T10779 arg1Of conserved,","
R7970 T10801 T10798 arg2Of conserved,are
R7971 T10801 T10799 arg1Of conserved,also
R7972 T10801 T10800 arg1Of conserved,well
R7973 T10801 T10802 arg1Of conserved,[
R7974 T10801 T10805 arg1Of conserved,;
R7975 T10801 T10806 arg1Of conserved,[
R7976 T10801 T10809 arg1Of conserved,;
R7977 T10801 T10810 arg1Of conserved,[
R7978 T10803 T10802 arg2Of 16,[
R7979 T10804 T10802 arg3Of ],[
R7980 T10807 T10806 arg2Of 30,[
R7981 T10808 T10806 arg3Of ],[
R7982 T10811 T10810 arg2Of 56,[
R7983 T10812 T10810 arg3Of ],[

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10851 121-124 http://www.uniprot.org/uniprot/P21579 denotes p65
T10850 121-124 http://www.uniprot.org/uniprot/Q04206 denotes p65

GO-BP

Id Subject Object Predicate Lexical cue
T10440 29-42 http://purl.obolibrary.org/obo/GO_0001101 denotes acid response
T10439 20-42 http://purl.obolibrary.org/obo/GO_0032526 denotes retinoic acid response
T10438 20-42 http://purl.obolibrary.org/obo/GO_0071300 denotes retinoic acid response

GO-MF

Id Subject Object Predicate Lexical cue
T10449 125-132 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T10399 0-204 Sentence denotes Further upstream, a retinoic acid response element at −1349/−1340, a PAUSE-1 silencer element at −1540/−1528 and a NF-κB p65 binding site at −1342/−1351 (Fig. S2) are also well conserved [16]; [30]; [56].
T150 0-204 Sentence denotes Further upstream, a retinoic acid response element at −1349/−1340, a PAUSE-1 silencer element at −1540/−1528 and a NF-κB p65 binding site at −1342/−1351 (Fig. S2) are also well conserved [16]; [30]; [56].

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10965 133-137 Entity denotes site
T10950 154-161 Entity denotes Fig. S2
T10934 0-33 Entity denotes Further upstream, a retinoic acid

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T10913 115-124 Protein denotes NF-κB p65

test3

Id Subject Object Predicate Lexical cue
T10387 125-132 Binding denotes binding