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PMC:3589482 / 23288-23467 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11272 178-179 . denotes .
T11271 177-178 NNP denotes ]
T11270 175-177 CD denotes 55
T11269 174-175 NNP denotes [
T11268 172-173 : denotes ;
T11267 171-172 NNP denotes ]
T11266 169-171 CD denotes 37
T11265 168-169 NNP denotes [
T11264 157-167 NN denotes nucleotide
T11263 149-156 JJ denotes central
T11262 142-148 JJ denotes single
T11261 140-141 DT denotes a
T11260 137-139 IN denotes of
T11259 128-136 NN denotes identity
T11258 124-127 DT denotes the
T11257 121-123 IN denotes in
T11256 113-120 VBZ denotes differs
T11255 109-112 NNP denotes CRE
T11254 105-108 DT denotes the
T11253 101-104 CC denotes and
T11252 99-100 , denotes ,
T11251 91-99 NN denotes promoter
T11250 82-90 NNP denotes SERPINB2
T11249 76-81 JJ denotes human
T11248 72-75 DT denotes the
T11247 69-71 IN denotes in
T11246 58-68 VBN denotes identified
T11245 52-57 DT denotes those
T11244 49-51 TO denotes to
T11243 40-48 NN denotes sequence
T11242 37-39 IN denotes in
T11241 27-36 JJ denotes identical
T11240 23-26 VBP denotes are
T11239 17-22 NNS denotes sites
T11238 12-16 JJ denotes AP-1
T11237 8-11 DT denotes the
T11236 5-7 IN denotes of
T11235 0-4 DT denotes Both
R8281 T11235 T11240 nsubj Both,are
R8282 T11236 T11235 prep of,Both
R8283 T11237 T11239 det the,sites
R8284 T11238 T11239 amod AP-1,sites
R8285 T11239 T11236 pobj sites,of
R8286 T11240 T11269 ccomp are,[
R8287 T11241 T11240 acomp identical,are
R8288 T11242 T11241 prep in,identical
R8289 T11243 T11242 pobj sequence,in
R8290 T11244 T11241 prep to,identical
R8291 T11245 T11244 pobj those,to
R8292 T11246 T11245 acl identified,those
R8293 T11247 T11246 prep in,identified
R8294 T11248 T11251 det the,promoter
R8295 T11249 T11251 amod human,promoter
R8296 T11250 T11251 compound SERPINB2,promoter
R8297 T11251 T11247 pobj promoter,in
R8298 T11252 T11240 punct ",",are
R8299 T11253 T11240 cc and,are
R8300 T11254 T11255 det the,CRE
R8301 T11255 T11256 nsubj CRE,differs
R8302 T11256 T11269 ccomp differs,[
R8303 T11257 T11256 prep in,differs
R8304 T11258 T11259 det the,identity
R8305 T11259 T11257 pobj identity,in
R8306 T11260 T11259 prep of,identity
R8307 T11261 T11264 det a,nucleotide
R8308 T11262 T11264 amod single,nucleotide
R8309 T11263 T11264 amod central,nucleotide
R8310 T11264 T11260 pobj nucleotide,of
R8311 T11265 T11267 nmod [,]
R8312 T11266 T11267 nummod 37,]
R8313 T11267 T11256 dobj ],differs
R8314 T11268 T11269 punct ;,[
R8315 T11269 T11269 ROOT [,[
R8316 T11270 T11271 nummod 55,]
R8317 T11271 T11269 dobj ],[
R8318 T11272 T11269 punct .,[

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10732 177-178 -RRB- denotes ]
T10731 175-177 CD denotes 55
T10730 174-175 -LRB- denotes [
T10729 172-173 -COLON- denotes ;
T10728 171-172 -RRB- denotes ]
T10727 169-171 CD denotes 37
T10726 168-169 -LRB- denotes [
T10725 157-167 NN denotes nucleotide
T10724 149-156 JJ denotes central
T10723 142-148 JJ denotes single
T10722 140-141 DT denotes a
T10721 137-139 IN denotes of
T10720 128-136 NN denotes identity
T10719 124-127 DT denotes the
T10718 121-123 IN denotes in
T10717 113-120 VB denotes differs
T10716 109-112 NN denotes CRE
T10715 105-108 DT denotes the
T10714 101-104 CC denotes and
T10713 99-100 -COMMA- denotes ,
T10712 91-99 NN denotes promoter
T10711 82-90 NN denotes SERPINB2
T10710 76-81 JJ denotes human
T10709 72-75 DT denotes the
T10708 69-71 IN denotes in
T10707 58-68 VB denotes identified
T10706 52-57 DT denotes those
T10705 49-51 TO denotes to
T10704 40-48 NN denotes sequence
T10703 37-39 IN denotes in
T10702 27-36 JJ denotes identical
T10701 23-26 VB denotes are
T10700 17-22 NN denotes sites
T10699 12-16 NN denotes AP-1
T10698 8-11 DT denotes the
T10697 5-7 IN denotes of
T10696 0-4 DT denotes Both
R7867 T10696 T10697 arg1Of Both,of
R7868 T10696 T10701 arg1Of Both,are
R7869 T10696 T10702 arg1Of Both,identical
R7870 T10700 T10697 arg2Of sites,of
R7871 T10700 T10698 arg1Of sites,the
R7872 T10700 T10699 arg1Of sites,AP-1
R7873 T10701 T10714 arg1Of are,and
R7874 T10702 T10701 arg2Of identical,are
R7875 T10702 T10703 arg1Of identical,in
R7876 T10702 T10705 arg1Of identical,to
R7877 T10704 T10703 arg2Of sequence,in
R7878 T10706 T10705 arg2Of those,to
R7879 T10706 T10707 arg2Of those,identified
R7880 T10707 T10708 arg1Of identified,in
R7881 T10712 T10708 arg2Of promoter,in
R7882 T10712 T10709 arg1Of promoter,the
R7883 T10712 T10710 arg1Of promoter,human
R7884 T10712 T10711 arg1Of promoter,SERPINB2
R7885 T10714 T10713 arg1Of and,","
R7886 T10716 T10715 arg1Of CRE,the
R7887 T10716 T10717 arg1Of CRE,differs
R7888 T10717 T10714 arg2Of differs,and
R7889 T10717 T10718 arg1Of differs,in
R7890 T10717 T10729 arg1Of differs,;
R7891 T10717 T10730 arg1Of differs,[
R7892 T10720 T10718 arg2Of identity,in
R7893 T10720 T10719 arg1Of identity,the
R7894 T10720 T10721 arg1Of identity,of
R7895 T10725 T10721 arg2Of nucleotide,of
R7896 T10725 T10722 arg1Of nucleotide,a
R7897 T10725 T10723 arg1Of nucleotide,single
R7898 T10725 T10724 arg1Of nucleotide,central
R7899 T10725 T10726 arg1Of nucleotide,[
R7900 T10727 T10726 arg2Of 37,[
R7901 T10728 T10726 arg3Of ],[
R7902 T10731 T10730 arg2Of 55,[
R7903 T10732 T10730 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T10426 82-90 Protein denotes SERPINB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10848 12-16 http://www.uniprot.org/uniprot/P05412 denotes AP-1
T10846 82-90 http://www.uniprot.org/uniprot/P05120 denotes SERPINB2

UBERON-AE

Id Subject Object Predicate Lexical cue
T10388 149-156 http://purl.obolibrary.org/obo/UBERON_0012131 denotes central

sentences

Id Subject Object Predicate Lexical cue
T10397 0-179 Sentence denotes Both of the AP-1 sites are identical in sequence to those identified in the human SERPINB2 promoter, and the CRE differs in the identity of a single central nucleotide [37]; [55].
T148 0-179 Sentence denotes Both of the AP-1 sites are identical in sequence to those identified in the human SERPINB2 promoter, and the CRE differs in the identity of a single central nucleotide [37]; [55].

simple1

Id Subject Object Predicate Lexical cue
T10460 82-90 Protein denotes SERPINB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10830 82-90 Protein denotes SERPINB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T10885 82-90 Protein denotes SERPINB2

DLUT931

Id Subject Object Predicate Lexical cue
T10869 82-90 Protein denotes SERPINB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10968 5-22 Entity denotes of the AP-1 sites
T10954 0-22 Entity denotes Both of the AP-1 sites
T10951 72-100 Entity denotes the human SERPINB2 promoter,
T10949 12-16 Protein denotes AP-1
T10947 105-112 Protein denotes the CRE
T10946 82-90 Protein denotes SERPINB2
T10935 140-172 Entity denotes a single central nucleotide [37]

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T10910 0-4 Gene_expression denotes Both
T10909 76-99 Protein denotes human SERPINB2 promoter
T10908 12-22 Protein denotes AP-1 sites
R8012 T10908 T10910 themeOf AP-1 sites,Both

testone

Id Subject Object Predicate Lexical cue
T10359 82-90 Protein denotes SERPINB2

test3

Id Subject Object Predicate Lexical cue
T10384 82-90 Protein denotes SERPINB2
T10370 82-90 Protein denotes SERPINB2