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PMC:3589482 / 21999-23849 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11381 1849-1850 . denotes .
T11380 1848-1849 NNP denotes ]
T11379 1846-1848 CD denotes 56
T11378 1845-1846 NNP denotes [
T11377 1843-1844 : denotes ;
T11376 1842-1843 NNP denotes ]
T11375 1840-1842 CD denotes 30
T11374 1839-1840 NNP denotes [
T11373 1837-1838 : denotes ;
T11372 1836-1837 NNP denotes ]
T11371 1834-1836 CD denotes 16
T11370 1833-1834 NNP denotes [
T11369 1823-1832 VBN denotes conserved
T11368 1818-1822 RB denotes well
T11367 1813-1817 RB denotes also
T11366 1809-1812 VBP denotes are
T11365 1807-1808 -RRB- denotes )
T11364 1805-1807 CD denotes S2
T11363 1803-1804 . denotes .
T11362 1800-1803 NN denotes Fig
T11361 1799-1800 -LRB- denotes (
T11360 1794-1798 CD denotes 1351
T11359 1793-1794 NN denotes −
T11358 1792-1793 NN denotes /
T11357 1788-1792 CD denotes 1342
T11356 1787-1788 CD denotes −
T11355 1784-1786 IN denotes at
T11354 1779-1783 NN denotes site
T11353 1771-1778 JJ denotes binding
T11352 1767-1770 CD denotes p65
T11351 1761-1766 NNP denotes NF-κB
T11350 1759-1760 DT denotes a
T11349 1755-1758 CC denotes and
T11348 1750-1754 CD denotes 1528
T11347 1749-1750 NN denotes −
T11346 1748-1749 NN denotes /
T11345 1744-1748 CD denotes 1540
T11344 1743-1744 CD denotes −
T11343 1740-1742 IN denotes at
T11342 1732-1739 NN denotes element
T11341 1723-1731 NN denotes silencer
T11340 1715-1722 NN denotes PAUSE-1
T11339 1713-1714 DT denotes a
T11317 1628-1634 NN denotes region
T11316 1619-1627 NN denotes promoter
T11315 1610-1618 JJ denotes proximal
T11314 1606-1609 DT denotes the
T11313 1599-1605 IN denotes within
T11312 1588-1598 VBN denotes identified
T11311 1583-1587 RB denotes also
T11310 1578-1582 VBD denotes were
T11309 1576-1577 -RRB- denotes )
T11308 1573-1576 CD denotes 288
T11307 1572-1573 NN denotes −
T11306 1571-1572 CD denotes /
T11305 1568-1571 CD denotes 296
T11304 1567-1568 FW denotes −
T11303 1566-1567 -LRB- denotes (
T11302 1560-1565 NNP denotes Oct-1
T11301 1556-1559 CC denotes and
T11300 1554-1555 -RRB- denotes )
T11299 1551-1554 CD denotes 407
T11298 1550-1551 NN denotes −
T11297 1549-1550 CD denotes /
T11296 1546-1549 CD denotes 412
T11295 1545-1546 NN denotes −
T11294 1544-1545 -LRB- denotes (
T11293 1541-1543 CD denotes .1
T11292 1539-1541 NNP denotes PU
T11291 1535-1538 IN denotes for
T11290 1529-1534 NNS denotes sites
T11289 1521-1528 JJ denotes binding
T11288 1511-1520 JJ denotes potential
T11287 1508-1510 IN denotes as
T11286 1503-1507 RB denotes well
T11285 1500-1502 RB denotes as
T11284 1498-1499 , denotes ,
T11283 1497-1498 -RRB- denotes )
T11282 1494-1497 CD denotes 533
T11281 1493-1494 NN denotes −
T11280 1492-1493 CD denotes /
T11279 1489-1492 CD denotes 538
T11278 1488-1489 FW denotes −
T11277 1487-1488 -LRB- denotes (
T11276 1483-1486 NN denotes box
T11275 1481-1482 NNP denotes E
T11274 1471-1480 NN denotes consensus
T11273 1469-1470 DT denotes A
T11272 1467-1468 . denotes .
T11271 1466-1467 NNP denotes ]
T11270 1464-1466 CD denotes 55
T11269 1463-1464 NNP denotes [
T11268 1461-1462 : denotes ;
T11267 1460-1461 NNP denotes ]
T11266 1458-1460 CD denotes 37
T11265 1457-1458 NNP denotes [
T11264 1446-1456 NN denotes nucleotide
T11263 1438-1445 JJ denotes central
T11262 1431-1437 JJ denotes single
T11261 1429-1430 DT denotes a
T11260 1426-1428 IN denotes of
T11259 1417-1425 NN denotes identity
T11258 1413-1416 DT denotes the
T11257 1410-1412 IN denotes in
T11256 1402-1409 VBZ denotes differs
T11255 1398-1401 NNP denotes CRE
T11254 1394-1397 DT denotes the
T11253 1390-1393 CC denotes and
T11252 1388-1389 , denotes ,
T11251 1380-1388 NN denotes promoter
T11250 1371-1379 NNP denotes SERPINB2
T11249 1365-1370 JJ denotes human
T11248 1361-1364 DT denotes the
T11247 1358-1360 IN denotes in
T11246 1347-1357 VBN denotes identified
T11245 1341-1346 DT denotes those
T11244 1338-1340 TO denotes to
T11243 1329-1337 NN denotes sequence
T11242 1326-1328 IN denotes in
T11241 1316-1325 JJ denotes identical
T11240 1312-1315 VBP denotes are
T11239 1306-1311 NNS denotes sites
T11238 1301-1305 JJ denotes AP-1
T11237 1297-1300 DT denotes the
T11236 1294-1296 IN denotes of
T11235 1289-1293 DT denotes Both
T11234 1287-1288 . denotes .
T11233 1284-1287 CD denotes 177
T11232 1283-1284 CD denotes −
T11231 1282-1283 NN denotes /
T11230 1279-1282 CD denotes 172
T11229 1278-1279 CD denotes −
T11228 1275-1277 IN denotes at
T11227 1267-1274 JJ denotes present
T11226 1264-1266 VBZ denotes is
T11225 1262-1263 -RRB- denotes )
T11224 1259-1262 NNP denotes CRE
T11223 1258-1259 -LRB- denotes (
T11222 1250-1257 NN denotes element
T11221 1241-1249 NN denotes response
T11220 1237-1240 NNP denotes AMP
T11219 1230-1236 JJ denotes cyclic
T11218 1221-1229 JJ denotes putative
T11217 1219-1220 DT denotes a
T11216 1215-1218 CC denotes and
T11215 1213-1214 , denotes ,
T11214 1210-1213 CD denotes 106
T11213 1209-1210 NN denotes −
T11212 1208-1209 CD denotes /
T11211 1205-1208 CD denotes 100
T11210 1204-1205 CD denotes −
T11209 1200-1203 CC denotes and
T11208 1197-1199 CD denotes 94
T11207 1196-1197 NN denotes −
T11206 1195-1196 CD denotes /
T11205 1193-1195 CD denotes 88
T11204 1192-1193 VBP denotes −
T11203 1180-1191 NNS denotes nucleotides
T11202 1177-1179 IN denotes at
T11201 1171-1176 VBN denotes found
T11200 1167-1170 VBP denotes are
T11199 1161-1166 NNS denotes sites
T11198 1153-1160 JJ denotes binding
T11197 1151-1152 -RRB- denotes )
T11196 1147-1151 NN denotes AP-1
T11195 1146-1147 -LRB- denotes (
T11194 1144-1145 CD denotes 1
T11193 1136-1143 NN denotes protein
T11192 1126-1135 NN denotes activator
T11191 1116-1125 JJ denotes potential
T11190 1112-1115 CD denotes two
T11189 1110-1111 , denotes ,
T11188 1107-1110 CD denotes 203
T11187 1106-1107 NN denotes −
T11186 1105-1106 NN denotes /
T11185 1102-1105 CD denotes 192
T11184 1101-1102 CD denotes −
T11183 1098-1100 IN denotes at
T11182 1090-1097 JJ denotes present
T11181 1087-1089 VBZ denotes is
T11180 1082-1086 NN denotes site
T11179 1080-1081 -RRB- denotes )
T11178 1075-1080 NNP denotes C/EBP
T11177 1074-1075 -LRB- denotes (
T11176 1066-1073 NN denotes protein
T11175 1058-1065 JJ denotes binding
T11174 1049-1057 NN denotes enhancer
T11173 1043-1048 NNP denotes CCAAT
T11172 1034-1042 JJ denotes putative
T11171 1032-1033 DT denotes A
T11170 1030-1031 . denotes .
T11169 1029-1030 NNP denotes ]
T11168 1027-1029 CD denotes 54
T11167 1026-1027 NNP denotes [
T11166 1024-1025 : denotes ;
T11165 1023-1024 NNP denotes ]
T11164 1021-1023 CD denotes 53
T11163 1020-1021 NNP denotes [
T11162 1015-1019 NN denotes gene
T11161 1006-1014 NNP denotes SERPINB2
T11160 1000-1005 JJ denotes human
T11159 996-999 DT denotes the
T11158 993-995 IN denotes of
T11157 989-992 NN denotes box
T11156 984-988 NNP denotes TATA
T11155 980-983 DT denotes the
T11154 977-979 IN denotes of
T11153 968-976 NN denotes position
T11152 964-967 DT denotes the
T11151 961-963 TO denotes to
T11150 953-960 JJ denotes similar
T11149 951-952 , denotes ,
T11148 947-951 NN denotes site
T11147 936-946 NN denotes initiation
T11146 922-935 NN denotes transcription
T11145 918-921 DT denotes the
T11144 913-917 IN denotes from
T11143 904-912 RB denotes upstream
T11142 899-903 CD denotes 29bp
T11141 896-898 TO denotes to
T11140 893-895 CD denotes 23
T11139 885-892 VBN denotes located
T11138 882-884 VBZ denotes is
T11137 873-881 NN denotes sequence
T11136 863-872 NN denotes consensus
T11135 858-862 NNP denotes TATA
T11134 856-857 DT denotes a
T11133 854-855 , denotes ,
T11132 842-854 RB denotes Specifically
T11131 840-841 . denotes .
T11130 839-840 -RRB- denotes )
T11129 838-839 LS denotes 3
T11128 833-837 FW denotes Fig.
T11127 832-833 -LRB- denotes (
T11126 823-831 NN denotes promoter
T11125 814-822 NNP denotes SerpinB2
T11124 807-813 NN denotes murine
T11123 803-806 DT denotes the
T11122 800-802 IN denotes in
T11121 790-799 VBN denotes conserved
T11120 786-789 VBP denotes are
T11119 777-785 NN denotes promoter
T11118 768-776 NN denotes proximal
T11117 759-767 NNP denotes SerpinB2
T11116 753-758 JJ denotes human
T11115 749-752 DT denotes the
T11114 746-748 IN denotes in
T11113 738-745 VBN denotes defined
T11112 729-737 NNS denotes elements
T11111 718-728 JJ denotes regulatory
T11110 707-717 JJ denotes cis-acting
T11109 703-706 DT denotes the
T11108 700-702 IN denotes of
T11107 692-699 JJ denotes several
T11106 687-691 IN denotes that
T11105 678-686 VBD denotes revealed
T11104 676-677 NNP denotes E
T11103 669-675 NNP denotes Region
T11102 666-668 IN denotes of
T11076 526-528 NNP denotes 2C
T11075 521-525 NNP denotes Fig.
T11074 520-521 -LRB- denotes (
T11073 510-519 NNS denotes promoters
T11072 503-509 JJ denotes murine
T11071 499-502 CC denotes and
T11070 493-498 JJ denotes human
T11069 489-492 DT denotes the
T11068 481-488 IN denotes between
T11067 479-480 -RRB- denotes )
T11066 476-479 NNP denotes A-E
T11065 475-476 -LRB- denotes (
T11064 467-474 NNS denotes regions
T11063 456-466 RB denotes homologous
T11062 448-455 RB denotes broadly
T11061 443-447 CD denotes five
T11060 432-442 VBD denotes delineated
T11059 423-431 NNS denotes elements
T11058 414-422 NN denotes sequence
T11057 403-413 JJ denotes repetitive
T11056 395-402 JJ denotes several
T11055 392-394 IN denotes of
T11054 383-391 NN denotes presence
T11053 379-382 DT denotes The
T11052 377-378 . denotes .
T11051 376-377 NNP denotes ]
T11050 374-376 CD denotes 52
T11049 373-374 NNP denotes [
T11048 362-372 NN denotes expression
T11047 357-361 NN denotes gene
T11046 348-356 NNP denotes SerpinB2
T11045 345-347 IN denotes of
T11044 334-344 NN denotes regulation
T11043 330-333 DT denotes the
T11042 327-329 IN denotes in
T11041 322-326 NN denotes role
T11040 320-321 DT denotes a
T11039 315-319 VB denotes play
T11038 309-314 MD denotes might
T11037 302-308 NN denotes region
T11036 297-301 DT denotes this
T11035 294-296 IN denotes in
T11034 288-293 NNS denotes sites
T11033 280-287 JJ denotes binding
T11032 273-279 NN denotes factor
T11031 259-272 NN denotes transcription
T11030 249-258 JJ denotes potential
T11029 247-248 , denotes ,
T11028 238-247 VBN denotes conserved
T11027 223-237 RB denotes evolutionarily
T11026 220-222 IN denotes of
T11025 211-219 NN denotes presence
T11024 207-210 DT denotes the
T11023 202-206 IN denotes that
T11022 193-201 VBD denotes reasoned
T11021 190-192 PRP denotes We
T11020 188-189 . denotes .
T11019 181-188 NNS denotes regions
T11018 172-180 NN denotes flanking
T11017 170-171 NN denotes ′
T11016 169-170 CD denotes 5
T11015 160-168 NN denotes SerpinB2
T11014 154-159 JJ denotes human
T11013 150-153 CC denotes and
T11012 143-149 NN denotes murine
T11011 139-142 DT denotes the
T11010 131-138 VBD denotes aligned
T11009 128-130 PRP denotes we
T11008 126-127 , denotes ,
T11007 123-126 NNP denotes LPS
T11006 120-122 TO denotes to
T11005 111-119 NN denotes response
T11004 107-110 DT denotes the
T11003 103-106 CC denotes and
T11002 98-102 NN denotes gene
T11001 89-97 NNP denotes SerpinB2
T11000 82-88 NN denotes murine
T10999 78-81 DT denotes the
T10998 75-77 IN denotes of
T10997 61-74 NN denotes transcription
T10996 53-60 VB denotes mediate
T10995 47-52 MD denotes might
T10994 42-46 WDT denotes that
T10993 33-41 NNS denotes elements
T10992 22-32 JJ denotes cis-acting
T10991 12-21 JJ denotes potential
T10990 8-11 IN denotes for
T10989 3-7 VB denotes look
T10988 0-2 TO denotes To
T11338 1711-1712 , denotes ,
T11337 1707-1711 CD denotes 1340
T11336 1706-1707 NN denotes −
T11335 1705-1706 NN denotes /
T11334 1701-1705 CD denotes 1349
T11333 1700-1701 CD denotes −
T11332 1697-1699 IN denotes at
T11331 1689-1696 NN denotes element
T11330 1680-1688 NN denotes response
T11329 1675-1679 NN denotes acid
T11328 1666-1674 JJ denotes retinoic
T11327 1664-1665 DT denotes a
T11326 1662-1663 , denotes ,
T11325 1654-1662 JJ denotes upstream
T11324 1646-1653 JJ denotes Further
T11323 1644-1645 . denotes .
T11322 1643-1644 -RRB- denotes )
T11321 1641-1643 CD denotes S2
T11320 1639-1640 . denotes .
T11319 1636-1639 NNP denotes Fig
T11318 1635-1636 -LRB- denotes (
T11101 657-665 NN denotes analysis
T11100 649-656 JJ denotes Further
T11099 647-648 . denotes .
T11098 639-647 NN denotes homology
T11097 630-638 JJS denotes greatest
T11096 626-629 DT denotes the
T11095 616-625 VBD denotes exhibited
T11094 614-615 , denotes ,
T11093 607-614 NN denotes element
T11092 598-606 NN denotes response
T11091 594-597 NNP denotes LPS
T11090 584-593 JJ denotes essential
T11089 580-583 DT denotes the
T11088 571-579 VBZ denotes contains
T11087 565-570 WDT denotes which
T11086 563-564 , denotes ,
T11085 562-563 -RRB- denotes )
T11084 561-562 NNP denotes E
T11083 554-560 NNP denotes Region
T11082 553-554 -LRB- denotes (
T11081 544-552 NN denotes promoter
T11080 535-543 JJ denotes proximal
T11079 531-534 DT denotes The
T11078 529-530 . denotes .
T11077 528-529 -RRB- denotes )
R8034 T10988 T10989 aux To,look
R8035 T10989 T11010 advcl look,aligned
R8036 T10990 T10989 prep for,look
R8037 T10991 T10993 amod potential,elements
R8038 T10992 T10993 amod cis-acting,elements
R8039 T10993 T10990 pobj elements,for
R8040 T10994 T10996 nsubj that,mediate
R8041 T10995 T10996 aux might,mediate
R8042 T10996 T10993 relcl mediate,elements
R8043 T10997 T10996 dobj transcription,mediate
R8044 T10998 T10997 prep of,transcription
R8045 T10999 T11002 det the,gene
R8046 T11000 T11002 compound murine,gene
R8047 T11001 T11002 compound SerpinB2,gene
R8048 T11002 T10998 pobj gene,of
R8049 T11003 T10997 cc and,transcription
R8050 T11004 T11005 det the,response
R8051 T11005 T10997 conj response,transcription
R8052 T11006 T11005 prep to,response
R8053 T11007 T11006 pobj LPS,to
R8054 T11008 T11010 punct ",",aligned
R8055 T11009 T11010 nsubj we,aligned
R8056 T11010 T11010 ROOT aligned,aligned
R8057 T11011 T11012 det the,murine
R8058 T11012 T11019 nmod murine,regions
R8059 T11013 T11012 cc and,murine
R8060 T11014 T11015 amod human,SerpinB2
R8061 T11015 T11012 conj SerpinB2,murine
R8062 T11016 T11019 nummod 5,regions
R8063 T11017 T11019 compound ′,regions
R8064 T11018 T11019 compound flanking,regions
R8065 T11019 T11010 dobj regions,aligned
R8066 T11020 T11010 punct .,aligned
R8067 T11021 T11022 nsubj We,reasoned
R8068 T11022 T11022 ROOT reasoned,reasoned
R8069 T11023 T11039 mark that,play
R8070 T11024 T11025 det the,presence
R8071 T11025 T11039 nsubj presence,play
R8072 T11026 T11025 prep of,presence
R8073 T11027 T11028 advmod evolutionarily,conserved
R8074 T11028 T11039 advcl conserved,play
R8075 T11029 T11039 punct ",",play
R8076 T11030 T11032 amod potential,factor
R8077 T11031 T11032 compound transcription,factor
R8078 T11032 T11039 nsubj factor,play
R8079 T11033 T11034 amod binding,sites
R8080 T11034 T11032 dobj sites,factor
R8081 T11035 T11034 prep in,sites
R8082 T11036 T11037 det this,region
R8083 T11037 T11035 pobj region,in
R8084 T11038 T11039 aux might,play
R8085 T11039 T11022 ccomp play,reasoned
R8086 T11040 T11041 det a,role
R8087 T11041 T11039 dobj role,play
R8088 T11042 T11041 prep in,role
R8089 T11043 T11044 det the,regulation
R8090 T11044 T11042 pobj regulation,in
R8091 T11045 T11044 prep of,regulation
R8092 T11046 T11048 compound SerpinB2,expression
R8093 T11047 T11048 compound gene,expression
R8094 T11048 T11045 pobj expression,of
R8095 T11049 T11051 nmod [,]
R8096 T11050 T11051 nummod 52,]
R8097 T11051 T11044 appos ],regulation
R8098 T11052 T11022 punct .,reasoned
R8099 T11053 T11054 det The,presence
R8100 T11054 T11060 nsubj presence,delineated
R8101 T11055 T11054 prep of,presence
R8102 T11056 T11059 amod several,elements
R8103 T11057 T11059 amod repetitive,elements
R8104 T11058 T11059 compound sequence,elements
R8105 T11059 T11055 pobj elements,of
R8106 T11060 T11060 ROOT delineated,delineated
R8107 T11061 T11060 dobj five,delineated
R8108 T11062 T11063 advmod broadly,homologous
R8109 T11063 T11064 amod homologous,regions
R8110 T11064 T11060 dobj regions,delineated
R8111 T11065 T11064 punct (,regions
R8112 T11066 T11064 appos A-E,regions
R8113 T11067 T11064 punct ),regions
R8114 T11068 T11064 prep between,regions
R8115 T11069 T11073 det the,promoters
R8116 T11070 T11073 amod human,promoters
R8117 T11071 T11070 cc and,human
R8118 T11072 T11070 conj murine,human
R8119 T11073 T11068 pobj promoters,between
R8120 T11074 T11064 punct (,regions
R8121 T11075 T11076 compound Fig.,2C
R8122 T11076 T11064 appos 2C,regions
R8123 T11077 T11064 punct ),regions
R8124 T11078 T11060 punct .,delineated
R8125 T11079 T11081 det The,promoter
R8126 T11080 T11081 amod proximal,promoter
R8127 T11081 T11095 nsubj promoter,exhibited
R8128 T11082 T11084 punct (,E
R8129 T11083 T11084 compound Region,E
R8130 T11084 T11081 appos E,promoter
R8131 T11085 T11084 punct ),E
R8132 T11086 T11081 punct ",",promoter
R8133 T11087 T11088 nsubj which,contains
R8134 T11088 T11081 relcl contains,promoter
R8135 T11089 T11093 det the,element
R8136 T11090 T11093 amod essential,element
R8137 T11091 T11093 compound LPS,element
R8138 T11092 T11093 compound response,element
R8139 T11093 T11088 dobj element,contains
R8140 T11094 T11081 punct ",",promoter
R8141 T11095 T11095 ROOT exhibited,exhibited
R8142 T11096 T11098 det the,homology
R8143 T11097 T11098 amod greatest,homology
R8144 T11098 T11095 dobj homology,exhibited
R8145 T11099 T11095 punct .,exhibited
R8146 T11100 T11101 amod Further,analysis
R8147 T11101 T11105 nsubj analysis,revealed
R8148 T11102 T11101 prep of,analysis
R8149 T11103 T11104 compound Region,E
R8150 T11104 T11102 pobj E,of
R8151 T11105 T11105 ROOT revealed,revealed
R8152 T11106 T11121 mark that,conserved
R8153 T11107 T11121 nsubjpass several,conserved
R8154 T11108 T11107 prep of,several
R8155 T11109 T11112 det the,elements
R8156 T11110 T11112 amod cis-acting,elements
R8157 T11111 T11112 amod regulatory,elements
R8158 T11112 T11108 pobj elements,of
R8159 T11113 T11112 acl defined,elements
R8160 T11114 T11113 prep in,defined
R8161 T11115 T11119 det the,promoter
R8162 T11116 T11119 amod human,promoter
R8163 T11117 T11119 compound SerpinB2,promoter
R8164 T11118 T11119 compound proximal,promoter
R8165 T11119 T11114 pobj promoter,in
R8166 T11120 T11121 auxpass are,conserved
R8167 T11121 T11105 ccomp conserved,revealed
R8168 T11122 T11121 prep in,conserved
R8169 T11123 T11126 det the,promoter
R8170 T11124 T11126 compound murine,promoter
R8171 T11125 T11126 compound SerpinB2,promoter
R8172 T11126 T11122 pobj promoter,in
R8173 T11127 T11126 punct (,promoter
R8174 T11128 T11129 nmod Fig.,3
R8175 T11129 T11126 appos 3,promoter
R8176 T11130 T11129 punct ),3
R8177 T11131 T11105 punct .,revealed
R8178 T11132 T11139 advmod Specifically,located
R8179 T11133 T11139 punct ",",located
R8180 T11134 T11137 det a,sequence
R8181 T11135 T11136 compound TATA,consensus
R8182 T11136 T11137 compound consensus,sequence
R8183 T11137 T11139 nsubjpass sequence,located
R8184 T11138 T11139 auxpass is,located
R8185 T11139 T11139 ROOT located,located
R8186 T11140 T11139 dobj 23,located
R8187 T11141 T11140 prep to,23
R8188 T11142 T11141 pobj 29bp,to
R8189 T11143 T11142 advmod upstream,29bp
R8190 T11144 T11143 prep from,upstream
R8191 T11145 T11148 det the,site
R8192 T11146 T11147 compound transcription,initiation
R8193 T11147 T11148 compound initiation,site
R8194 T11148 T11144 pobj site,from
R8195 T11149 T11148 punct ",",site
R8196 T11150 T11148 amod similar,site
R8197 T11151 T11150 prep to,similar
R8198 T11152 T11153 det the,position
R8199 T11153 T11151 pobj position,to
R8200 T11154 T11153 prep of,position
R8201 T11155 T11157 det the,box
R8202 T11156 T11157 compound TATA,box
R8203 T11157 T11154 pobj box,of
R8204 T11158 T11157 prep of,box
R8205 T11159 T11162 det the,gene
R8206 T11160 T11162 amod human,gene
R8207 T11161 T11162 compound SERPINB2,gene
R8208 T11162 T11158 pobj gene,of
R8209 T11163 T11165 nmod [,]
R8210 T11164 T11165 nummod 53,]
R8211 T11165 T11150 appos ],similar
R8212 T11166 T11165 punct ;,]
R8213 T11167 T11165 conj [,]
R8214 T11168 T11169 nummod 54,]
R8215 T11169 T11165 conj ],]
R8216 T11170 T11139 punct .,located
R8217 T11171 T11176 det A,protein
R8218 T11172 T11174 amod putative,enhancer
R8219 T11173 T11174 compound CCAAT,enhancer
R8220 T11174 T11176 nmod enhancer,protein
R8221 T11175 T11176 amod binding,protein
R8222 T11176 T11181 nsubj protein,is
R8223 T11177 T11176 punct (,protein
R8224 T11178 T11180 compound C/EBP,site
R8225 T11179 T11180 punct ),site
R8226 T11180 T11176 appos site,protein
R8227 T11181 T11181 ROOT is,is
R8228 T11182 T11181 acomp present,is
R8229 T11183 T11181 prep at,is
R8230 T11184 T11201 nsubjpass −,found
R8231 T11185 T11187 nummod 192,−
R8232 T11186 T11187 compound /,−
R8233 T11187 T11201 npadvmod −,found
R8234 T11188 T11187 nummod 203,−
R8235 T11189 T11201 punct ",",found
R8236 T11190 T11199 nummod two,sites
R8237 T11191 T11193 amod potential,protein
R8238 T11192 T11193 compound activator,protein
R8239 T11193 T11199 nmod protein,sites
R8240 T11194 T11193 nummod 1,protein
R8241 T11195 T11196 punct (,AP-1
R8242 T11196 T11193 appos AP-1,protein
R8243 T11197 T11193 punct ),protein
R8244 T11198 T11199 amod binding,sites
R8245 T11199 T11201 nsubjpass sites,found
R8246 T11200 T11201 auxpass are,found
R8247 T11201 T11181 advcl found,is
R8248 T11202 T11201 prep at,found
R8249 T11203 T11202 pobj nucleotides,at
R8250 T11204 T11207 meta −,−
R8251 T11205 T11206 compound 88,/
R8252 T11206 T11207 nummod /,−
R8253 T11207 T11226 nsubj −,is
R8254 T11208 T11207 nummod 94,−
R8255 T11209 T11207 cc and,−
R8256 T11210 T11213 nummod −,−
R8257 T11211 T11213 nummod 100,−
R8258 T11212 T11213 nummod /,−
R8259 T11213 T11207 conj −,−
R8260 T11214 T11213 nummod 106,−
R8261 T11215 T11213 punct ",",−
R8262 T11216 T11213 cc and,−
R8263 T11217 T11222 det a,element
R8264 T11218 T11222 amod putative,element
R8265 T11219 T11222 amod cyclic,element
R8266 T11220 T11222 compound AMP,element
R8267 T11221 T11222 compound response,element
R8268 T11222 T11213 conj element,−
R8269 T11223 T11224 punct (,CRE
R8270 T11224 T11222 appos CRE,element
R8271 T11225 T11222 punct ),element
R8272 T11226 T11181 conj is,is
R8273 T11227 T11226 acomp present,is
R8274 T11228 T11227 prep at,present
R8275 T11229 T11232 nummod −,−
R8276 T11230 T11232 nummod 172,−
R8277 T11231 T11232 punct /,−
R8278 T11232 T11228 pobj −,at
R8279 T11233 T11226 npadvmod 177,is
R8280 T11234 T11226 punct .,is
R8281 T11235 T11240 nsubj Both,are
R8282 T11236 T11235 prep of,Both
R8283 T11237 T11239 det the,sites
R8284 T11238 T11239 amod AP-1,sites
R8285 T11239 T11236 pobj sites,of
R8286 T11240 T11269 ccomp are,[
R8287 T11241 T11240 acomp identical,are
R8288 T11242 T11241 prep in,identical
R8289 T11243 T11242 pobj sequence,in
R8290 T11244 T11241 prep to,identical
R8291 T11245 T11244 pobj those,to
R8292 T11246 T11245 acl identified,those
R8293 T11247 T11246 prep in,identified
R8294 T11248 T11251 det the,promoter
R8295 T11249 T11251 amod human,promoter
R8296 T11250 T11251 compound SERPINB2,promoter
R8297 T11251 T11247 pobj promoter,in
R8298 T11252 T11240 punct ",",are
R8299 T11253 T11240 cc and,are
R8300 T11254 T11255 det the,CRE
R8301 T11255 T11256 nsubj CRE,differs
R8302 T11256 T11269 ccomp differs,[
R8303 T11257 T11256 prep in,differs
R8304 T11258 T11259 det the,identity
R8305 T11259 T11257 pobj identity,in
R8306 T11260 T11259 prep of,identity
R8307 T11261 T11264 det a,nucleotide
R8308 T11262 T11264 amod single,nucleotide
R8309 T11263 T11264 amod central,nucleotide
R8310 T11264 T11260 pobj nucleotide,of
R8311 T11265 T11267 nmod [,]
R8312 T11266 T11267 nummod 37,]
R8313 T11267 T11256 dobj ],differs
R8314 T11268 T11269 punct ;,[
R8315 T11269 T11269 ROOT [,[
R8316 T11270 T11271 nummod 55,]
R8317 T11271 T11269 dobj ],[
R8318 T11272 T11269 punct .,[
R8319 T11273 T11276 det A,box
R8320 T11274 T11276 compound consensus,box
R8321 T11275 T11276 compound E,box
R8322 T11276 T11276 ROOT box,box
R8323 T11277 T11276 punct (,box
R8324 T11278 T11312 advmod −,identified
R8325 T11279 T11312 npadvmod 538,identified
R8326 T11280 T11312 nsubjpass /,identified
R8327 T11281 T11312 nsubjpass −,identified
R8328 T11282 T11281 nummod 533,−
R8329 T11283 T11281 punct ),−
R8330 T11284 T11281 punct ",",−
R8331 T11285 T11287 advmod as,as
R8332 T11286 T11287 advmod well,as
R8333 T11287 T11281 cc as,−
R8334 T11288 T11290 amod potential,sites
R8335 T11289 T11290 amod binding,sites
R8336 T11290 T11281 conj sites,−
R8337 T11291 T11290 prep for,sites
R8338 T11292 T11312 nsubjpass PU,identified
R8339 T11293 T11292 nummod .1,PU
R8340 T11294 T11295 punct (,−
R8341 T11295 T11312 amod −,identified
R8342 T11296 T11297 compound 412,/
R8343 T11297 T11312 nsubjpass /,identified
R8344 T11298 T11312 oprd −,identified
R8345 T11299 T11298 nummod 407,−
R8346 T11300 T11298 punct ),−
R8347 T11301 T11298 cc and,−
R8348 T11302 T11298 conj Oct-1,−
R8349 T11303 T11304 punct (,−
R8350 T11304 T11312 csubjpass −,identified
R8351 T11305 T11306 compound 296,/
R8352 T11306 T11312 nsubjpass /,identified
R8353 T11307 T11312 nsubjpass −,identified
R8354 T11308 T11307 nummod 288,−
R8355 T11309 T11307 punct ),−
R8356 T11310 T11312 auxpass were,identified
R8357 T11311 T11312 advmod also,identified
R8358 T11312 T11276 acl identified,box
R8359 T11313 T11312 prep within,identified
R8360 T11314 T11317 det the,region
R8361 T11315 T11317 amod proximal,region
R8362 T11316 T11317 compound promoter,region
R8363 T11317 T11313 pobj region,within
R8364 T11318 T11319 punct (,Fig
R8365 T11319 T11317 appos Fig,region
R8366 T11320 T11321 punct .,S2
R8367 T11321 T11312 npadvmod S2,identified
R8368 T11322 T11321 punct ),S2
R8369 T11323 T11312 punct .,identified
R8370 T11324 T11325 amod Further,upstream
R8371 T11325 T11325 ROOT upstream,upstream
R8372 T11326 T11325 punct ",",upstream
R8373 T11327 T11331 det a,element
R8374 T11328 T11331 amod retinoic,element
R8375 T11329 T11330 compound acid,response
R8376 T11330 T11331 compound response,element
R8377 T11331 T11325 appos element,upstream
R8378 T11332 T11331 prep at,element
R8379 T11333 T11334 nummod −,1349
R8380 T11334 T11332 pobj 1349,at
R8381 T11335 T11336 compound /,−
R8382 T11336 T11331 nmod −,element
R8383 T11337 T11336 appos 1340,−
R8384 T11338 T11336 punct ",",−
R8385 T11339 T11342 det a,element
R8386 T11340 T11342 compound PAUSE-1,element
R8387 T11341 T11342 compound silencer,element
R8388 T11342 T11336 appos element,−
R8389 T11343 T11342 prep at,element
R8390 T11344 T11345 nummod −,1540
R8391 T11345 T11343 pobj 1540,at
R8392 T11346 T11347 compound /,−
R8393 T11347 T11342 nmod −,element
R8394 T11348 T11347 nummod 1528,−
R8395 T11349 T11347 cc and,−
R8396 T11350 T11354 det a,site
R8397 T11351 T11354 nmod NF-κB,site
R8398 T11352 T11354 nummod p65,site
R8399 T11353 T11354 amod binding,site
R8400 T11354 T11347 conj site,−
R8401 T11355 T11354 prep at,site
R8402 T11356 T11360 nummod −,1351
R8403 T11357 T11358 nummod 1342,/
R8404 T11358 T11359 compound /,−
R8405 T11359 T11360 compound −,1351
R8406 T11360 T11355 pobj 1351,at
R8407 T11361 T11362 punct (,Fig
R8408 T11362 T11354 appos Fig,site
R8409 T11363 T11362 punct .,Fig
R8410 T11364 T11362 nummod S2,Fig
R8411 T11365 T11362 punct ),Fig
R8412 T11366 T11369 auxpass are,conserved
R8413 T11367 T11369 advmod also,conserved
R8414 T11368 T11369 advmod well,conserved
R8415 T11369 T11325 conj conserved,upstream
R8416 T11370 T11372 nmod [,]
R8417 T11371 T11372 nummod 16,]
R8418 T11372 T11369 dobj ],conserved
R8419 T11373 T11372 punct ;,]
R8420 T11374 T11376 nmod [,]
R8421 T11375 T11376 nummod 30,]
R8422 T11376 T11372 conj ],]
R8423 T11377 T11376 punct ;,]
R8424 T11378 T11376 conj [,]
R8425 T11379 T11380 nummod 56,]
R8426 T11380 T11376 conj ],]
R8427 T11381 T11369 punct .,conserved

2_test

Id Subject Object Predicate Lexical cue
23472114-2303256-87899180 1027-1029 2303256 denotes 54
23472114-8916932-87899181 1840-1842 8916932 denotes 30
T35910 1027-1029 2303256 denotes 54
T61298 1840-1842 8916932 denotes 30

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10739 1497-1498 -RRB- denotes )
T10738 1488-1497 CD denotes −538/−533
T10737 1487-1488 -LRB- denotes (
T10736 1483-1486 NN denotes box
T10735 1481-1482 NN denotes E
T10734 1471-1480 NN denotes consensus
T10733 1469-1470 DT denotes A
T10732 1466-1467 -RRB- denotes ]
T10731 1464-1466 CD denotes 55
T10730 1463-1464 -LRB- denotes [
T10729 1461-1462 -COLON- denotes ;
T10728 1460-1461 -RRB- denotes ]
T10727 1458-1460 CD denotes 37
T10726 1457-1458 -LRB- denotes [
T10725 1446-1456 NN denotes nucleotide
T10724 1438-1445 JJ denotes central
T10723 1431-1437 JJ denotes single
T10722 1429-1430 DT denotes a
T10721 1426-1428 IN denotes of
T10720 1417-1425 NN denotes identity
T10719 1413-1416 DT denotes the
T10718 1410-1412 IN denotes in
T10717 1402-1409 VB denotes differs
T10716 1398-1401 NN denotes CRE
T10715 1394-1397 DT denotes the
T10714 1390-1393 CC denotes and
T10713 1388-1389 -COMMA- denotes ,
T10712 1380-1388 NN denotes promoter
T10711 1371-1379 NN denotes SERPINB2
T10710 1365-1370 JJ denotes human
T10709 1361-1364 DT denotes the
T10708 1358-1360 IN denotes in
T10707 1347-1357 VB denotes identified
T10706 1341-1346 DT denotes those
T10705 1338-1340 TO denotes to
T10704 1329-1337 NN denotes sequence
T10703 1326-1328 IN denotes in
T10702 1316-1325 JJ denotes identical
T10701 1312-1315 VB denotes are
T10700 1306-1311 NN denotes sites
T10699 1301-1305 NN denotes AP-1
T10698 1297-1300 DT denotes the
T10697 1294-1296 IN denotes of
T10696 1289-1293 DT denotes Both
T10695 1278-1287 CD denotes −172/−177
T10694 1275-1277 IN denotes at
T10693 1267-1274 JJ denotes present
T10692 1264-1266 VB denotes is
T10691 1262-1263 -RRB- denotes )
T10690 1259-1262 NN denotes CRE
T10689 1258-1259 -LRB- denotes (
T10688 1250-1257 NN denotes element
T10687 1241-1249 NN denotes response
T10686 1237-1240 NN denotes AMP
T10685 1230-1236 JJ denotes cyclic
T10684 1221-1229 JJ denotes putative
T10683 1219-1220 DT denotes a
T10682 1215-1218 CC denotes and
T10681 1213-1214 -COMMA- denotes ,
T10680 1204-1213 CD denotes −100/−106
T10679 1200-1203 CC denotes and
T10678 1192-1199 CD denotes −88/−94
T10677 1180-1191 NN denotes nucleotides
T10676 1177-1179 IN denotes at
T10675 1171-1176 VB denotes found
T10674 1167-1170 VB denotes are
T10673 1161-1166 NN denotes sites
T10672 1153-1160 NN denotes binding
T10671 1151-1152 -RRB- denotes )
T10670 1147-1151 NN denotes AP-1
T10669 1146-1147 -LRB- denotes (
T10668 1144-1145 CD denotes 1
T10667 1136-1143 NN denotes protein
T10666 1126-1135 NN denotes activator
T10665 1116-1125 JJ denotes potential
T10664 1112-1115 CD denotes two
T10663 1110-1111 -COMMA- denotes ,
T10662 1101-1110 CD denotes −192/−203
T10661 1098-1100 IN denotes at
T10660 1090-1097 JJ denotes present
T10659 1087-1089 VB denotes is
T10658 1082-1086 NN denotes site
T10657 1080-1081 -RRB- denotes )
T10656 1075-1080 NN denotes C/EBP
T10655 1074-1075 -LRB- denotes (
T10654 1066-1073 NN denotes protein
T10653 1058-1065 NN denotes binding
T10652 1049-1057 NN denotes enhancer
T10651 1043-1048 NN denotes CCAAT
T10650 1034-1042 JJ denotes putative
T10649 1032-1033 DT denotes A
T10648 1029-1030 -RRB- denotes ]
T10647 1027-1029 CD denotes 54
T10646 1026-1027 -LRB- denotes [
T10645 1024-1025 -COLON- denotes ;
T10644 1023-1024 -RRB- denotes ]
T10643 1021-1023 CD denotes 53
T10642 1020-1021 -LRB- denotes [
T10641 1015-1019 NN denotes gene
T10640 1006-1014 NN denotes SERPINB2
T10639 1000-1005 JJ denotes human
T10638 996-999 DT denotes the
T10637 993-995 IN denotes of
T10636 989-992 NN denotes box
T10635 984-988 NN denotes TATA
T10634 980-983 DT denotes the
T10633 977-979 IN denotes of
T10632 968-976 NN denotes position
T10631 964-967 DT denotes the
T10630 961-963 TO denotes to
T10629 953-960 JJ denotes similar
T10628 951-952 -COMMA- denotes ,
T10627 947-951 NN denotes site
T10626 936-946 NN denotes initiation
T10625 922-935 NN denotes transcription
T10624 918-921 DT denotes the
T10623 913-917 IN denotes from
T10622 904-912 RB denotes upstream
T10621 899-903 VB denotes 29bp
T10620 896-898 TO denotes to
T10619 893-895 CD denotes 23
T10618 885-892 JJ denotes located
T10617 882-884 VB denotes is
T10616 873-881 NN denotes sequence
T10615 863-872 NN denotes consensus
T10614 858-862 NN denotes TATA
T10613 856-857 DT denotes a
T10612 854-855 -COMMA- denotes ,
T10611 842-854 RB denotes Specifically
T10610 839-840 -RRB- denotes )
T10609 838-839 CD denotes 3
T10608 833-837 NN denotes Fig.
T10607 832-833 -LRB- denotes (
T10606 823-831 NN denotes promoter
T10605 814-822 NN denotes SerpinB2
T10604 807-813 JJ denotes murine
T10603 803-806 DT denotes the
T10602 800-802 IN denotes in
T10601 790-799 VB denotes conserved
T10600 786-789 VB denotes are
T10599 777-785 NN denotes promoter
T10598 768-776 JJ denotes proximal
T10597 759-767 NN denotes SerpinB2
T10596 753-758 JJ denotes human
T10595 749-752 DT denotes the
T10594 746-748 IN denotes in
T10593 738-745 VB denotes defined
T10592 729-737 NN denotes elements
T10591 718-728 JJ denotes regulatory
T10590 707-717 JJ denotes cis-acting
T10589 703-706 DT denotes the
T10588 700-702 IN denotes of
T10587 692-699 JJ denotes several
T10586 687-691 IN denotes that
T10585 678-686 VB denotes revealed
T10584 676-677 NN denotes E
T10583 669-675 NN denotes Region
T10582 666-668 IN denotes of
T10581 657-665 NN denotes analysis
T10580 649-656 JJ denotes Further
T10579 639-647 NN denotes homology
T10578 630-638 JJ denotes greatest
T10577 626-629 DT denotes the
T10576 616-625 VB denotes exhibited
T10575 614-615 -COMMA- denotes ,
T10574 607-614 NN denotes element
T10573 598-606 NN denotes response
T10572 594-597 NN denotes LPS
T10571 584-593 JJ denotes essential
T10570 580-583 DT denotes the
T10569 571-579 VB denotes contains
T10568 565-570 WDT denotes which
T10567 563-564 -COMMA- denotes ,
T10566 562-563 -RRB- denotes )
T10565 561-562 NN denotes E
T10564 554-560 NN denotes Region
T10563 553-554 -LRB- denotes (
T10562 544-552 NN denotes promoter
T10561 535-543 JJ denotes proximal
T10560 531-534 DT denotes The
T10559 528-529 -RRB- denotes )
T10558 526-528 NN denotes 2C
T10557 521-525 NN denotes Fig.
T10556 520-521 -LRB- denotes (
T10555 510-519 NN denotes promoters
T10554 503-509 JJ denotes murine
T10553 499-502 CC denotes and
T10552 493-498 JJ denotes human
T10551 489-492 DT denotes the
T10550 481-488 IN denotes between
T10549 479-480 -RRB- denotes )
T10548 476-479 NN denotes A-E
T10547 475-476 -LRB- denotes (
T10546 467-474 NN denotes regions
T10545 456-466 JJ denotes homologous
T10544 448-455 RB denotes broadly
T10543 443-447 CD denotes five
T10542 432-442 JJ denotes delineated
T10541 423-431 NN denotes elements
T10540 414-422 NN denotes sequence
T10539 403-413 JJ denotes repetitive
T10538 395-402 JJ denotes several
T10537 392-394 IN denotes of
T10536 383-391 NN denotes presence
T10535 379-382 DT denotes The
T10534 376-377 -RRB- denotes ]
T10533 374-376 CD denotes 52
T10532 373-374 -LRB- denotes [
T10531 362-372 NN denotes expression
T10530 357-361 NN denotes gene
T10529 348-356 NN denotes SerpinB2
T10528 345-347 IN denotes of
T10527 334-344 NN denotes regulation
T10526 330-333 DT denotes the
T10525 327-329 IN denotes in
T10524 322-326 NN denotes role
T10515 273-279 NN denotes factor
T10514 259-272 NN denotes transcription
T10513 249-258 JJ denotes potential
T10512 247-248 -COMMA- denotes ,
T10511 238-247 VB denotes conserved
T10510 223-237 RB denotes evolutionarily
T10509 220-222 IN denotes of
T10508 211-219 NN denotes presence
T10507 207-210 DT denotes the
T10506 202-206 IN denotes that
T10505 193-201 VB denotes reasoned
T10504 190-192 PRP denotes We
T10503 181-188 NN denotes regions
T10502 172-180 NN denotes flanking
T10501 169-171 NN denotes 5′
T10500 160-168 NN denotes SerpinB2
T10499 154-159 JJ denotes human
T10498 150-153 CC denotes and
T10497 143-149 JJ denotes murine
T10496 139-142 DT denotes the
T10495 131-138 VB denotes aligned
T10494 128-130 PRP denotes we
T10493 126-127 -COMMA- denotes ,
T10492 123-126 NN denotes LPS
T10491 120-122 TO denotes to
T10490 111-119 NN denotes response
T10489 107-110 DT denotes the
T10488 103-106 CC denotes and
T10487 98-102 NN denotes gene
T10486 89-97 NN denotes SerpinB2
T10485 82-88 JJ denotes murine
T10484 78-81 DT denotes the
T10483 75-77 IN denotes of
T10482 61-74 NN denotes transcription
T10481 53-60 VB denotes mediate
T10480 47-52 MD denotes might
T10479 42-46 WDT denotes that
T10478 33-41 NN denotes elements
T10477 22-32 JJ denotes cis-acting
T10476 12-21 JJ denotes potential
T10475 8-11 IN denotes for
T10474 3-7 VB denotes look
T10473 0-2 TO denotes To
T10812 1848-1849 -RRB- denotes ]
T10811 1846-1848 CD denotes 56
T10810 1845-1846 -LRB- denotes [
T10809 1843-1844 -COLON- denotes ;
T10808 1842-1843 -RRB- denotes ]
T10807 1840-1842 CD denotes 30
T10806 1839-1840 -LRB- denotes [
T10805 1837-1838 -COLON- denotes ;
T10804 1836-1837 -RRB- denotes ]
T10803 1834-1836 CD denotes 16
T10802 1833-1834 -LRB- denotes [
T10801 1823-1832 VB denotes conserved
T10800 1818-1822 RB denotes well
T10799 1813-1817 RB denotes also
T10798 1809-1812 VB denotes are
T10797 1807-1808 -RRB- denotes )
T10796 1805-1807 NN denotes S2
T10795 1800-1804 NNP denotes Fig.
T10794 1799-1800 -LRB- denotes (
T10793 1787-1798 CD denotes −1342/−1351
T10792 1784-1786 IN denotes at
T10791 1779-1783 NN denotes site
T10790 1771-1778 NN denotes binding
T10789 1767-1770 NN denotes p65
T10788 1761-1766 NN denotes NF-κB
T10787 1759-1760 DT denotes a
T10786 1755-1758 CC denotes and
T10785 1743-1754 CD denotes −1540/−1528
T10784 1740-1742 IN denotes at
T10783 1732-1739 NN denotes element
T10782 1723-1731 NN denotes silencer
T10781 1715-1722 NN denotes PAUSE-1
T10780 1713-1714 DT denotes a
T10779 1711-1712 -COMMA- denotes ,
T10778 1700-1711 CD denotes −1349/−1340
T10777 1697-1699 IN denotes at
T10776 1689-1696 NN denotes element
T10775 1680-1688 NN denotes response
T10774 1675-1679 NN denotes acid
T10773 1666-1674 JJ denotes retinoic
T10772 1664-1665 DT denotes a
T10771 1662-1663 -COMMA- denotes ,
T10770 1654-1662 RB denotes upstream
T10769 1646-1653 RB denotes Further
T10768 1643-1644 -RRB- denotes )
T10767 1641-1643 NN denotes S2
T10766 1636-1640 NN denotes Fig.
T10765 1635-1636 -LRB- denotes (
T10764 1628-1634 NN denotes region
T10763 1619-1627 NN denotes promoter
T10762 1610-1618 JJ denotes proximal
T10761 1606-1609 DT denotes the
T10760 1599-1605 IN denotes within
T10759 1588-1598 VB denotes identified
T10758 1583-1587 RB denotes also
T10757 1578-1582 VB denotes were
T10756 1576-1577 -RRB- denotes )
T10755 1567-1576 CD denotes −296/−288
T10754 1566-1567 -LRB- denotes (
T10753 1560-1565 NN denotes Oct-1
T10752 1556-1559 CC denotes and
T10751 1554-1555 -RRB- denotes )
T10750 1545-1554 CD denotes −412/−407
T10749 1544-1545 -LRB- denotes (
T10748 1539-1543 NN denotes PU.1
T10747 1535-1538 IN denotes for
T10746 1529-1534 NN denotes sites
T10745 1521-1528 VB denotes binding
T10744 1511-1520 JJ denotes potential
T10743 1508-1510 IN denotes as
T10742 1503-1507 RB denotes well
T10741 1500-1502 RB denotes as
T10740 1498-1499 -COMMA- denotes ,
T10523 320-321 DT denotes a
T10522 315-319 VB denotes play
T10521 309-314 MD denotes might
T10520 302-308 NN denotes region
T10519 297-301 DT denotes this
T10518 294-296 IN denotes in
T10517 288-293 NN denotes sites
T10516 280-287 NN denotes binding
R7640 T10474 T10473 arg1Of look,To
R7641 T10474 T10475 arg1Of look,for
R7642 T10478 T10475 arg2Of elements,for
R7643 T10478 T10476 arg1Of elements,potential
R7644 T10478 T10477 arg1Of elements,cis-acting
R7645 T10478 T10479 arg1Of elements,that
R7646 T10478 T10480 arg1Of elements,might
R7647 T10478 T10481 arg1Of elements,mediate
R7648 T10481 T10480 arg2Of mediate,might
R7649 T10482 T10483 arg1Of transcription,of
R7650 T10482 T10488 arg1Of transcription,and
R7651 T10487 T10483 arg2Of gene,of
R7652 T10487 T10484 arg1Of gene,the
R7653 T10487 T10485 arg1Of gene,murine
R7654 T10487 T10486 arg1Of gene,SerpinB2
R7655 T10488 T10481 arg2Of and,mediate
R7656 T10490 T10488 arg2Of response,and
R7657 T10490 T10489 arg1Of response,the
R7658 T10490 T10491 arg1Of response,to
R7659 T10492 T10491 arg2Of LPS,to
R7660 T10494 T10474 arg1Of we,look
R7661 T10494 T10495 arg1Of we,aligned
R7662 T10495 T10473 modOf aligned,To
R7663 T10495 T10493 arg1Of aligned,","
R7664 T10497 T10498 arg1Of murine,and
R7665 T10499 T10498 arg2Of human,and
R7666 T10503 T10495 arg2Of regions,aligned
R7667 T10503 T10496 arg1Of regions,the
R7668 T10503 T10497 arg1Of regions,murine
R7669 T10503 T10499 arg1Of regions,human
R7670 T10503 T10500 arg1Of regions,SerpinB2
R7671 T10503 T10501 arg1Of regions,5′
R7672 T10503 T10502 arg1Of regions,flanking
R7673 T10504 T10505 arg1Of We,reasoned
R7674 T10508 T10507 arg1Of presence,the
R7675 T10508 T10509 arg1Of presence,of
R7676 T10508 T10518 arg1Of presence,in
R7677 T10508 T10521 arg1Of presence,might
R7678 T10508 T10522 arg1Of presence,play
R7679 T10511 T10510 arg1Of conserved,evolutionarily
R7680 T10517 T10509 arg2Of sites,of
R7681 T10517 T10511 arg1Of sites,conserved
R7682 T10517 T10512 arg1Of sites,","
R7683 T10517 T10513 arg1Of sites,potential
R7684 T10517 T10514 arg1Of sites,transcription
R7685 T10517 T10515 arg1Of sites,factor
R7686 T10517 T10516 arg1Of sites,binding
R7687 T10520 T10518 arg2Of region,in
R7688 T10520 T10519 arg1Of region,this
R7689 T10522 T10505 arg2Of play,reasoned
R7690 T10522 T10506 arg1Of play,that
R7691 T10522 T10521 arg2Of play,might
R7692 T10522 T10525 arg1Of play,in
R7693 T10524 T10522 arg2Of role,play
R7694 T10524 T10523 arg1Of role,a
R7695 T10527 T10525 arg2Of regulation,in
R7696 T10527 T10526 arg1Of regulation,the
R7697 T10527 T10528 arg1Of regulation,of
R7698 T10531 T10528 arg2Of expression,of
R7699 T10531 T10529 arg1Of expression,SerpinB2
R7700 T10531 T10530 arg1Of expression,gene
R7701 T10531 T10532 arg1Of expression,[
R7702 T10533 T10532 arg2Of 52,[
R7703 T10534 T10532 arg3Of ],[
R7704 T10536 T10535 arg1Of presence,The
R7705 T10536 T10537 arg1Of presence,of
R7706 T10536 T10542 arg1Of presence,delineated
R7707 T10541 T10537 arg2Of elements,of
R7708 T10541 T10538 arg1Of elements,several
R7709 T10541 T10539 arg1Of elements,repetitive
R7710 T10541 T10540 arg1Of elements,sequence
R7711 T10542 T10550 arg1Of delineated,between
R7712 T10546 T10542 arg2Of regions,delineated
R7713 T10546 T10543 arg1Of regions,five
R7714 T10546 T10544 arg1Of regions,broadly
R7715 T10546 T10545 arg1Of regions,homologous
R7716 T10546 T10547 arg1Of regions,(
R7717 T10548 T10547 arg2Of A-E,(
R7718 T10549 T10547 arg3Of ),(
R7719 T10552 T10553 arg1Of human,and
R7720 T10554 T10553 arg2Of murine,and
R7721 T10555 T10550 arg2Of promoters,between
R7722 T10555 T10551 arg1Of promoters,the
R7723 T10555 T10552 arg1Of promoters,human
R7724 T10555 T10554 arg1Of promoters,murine
R7725 T10555 T10556 arg1Of promoters,(
R7726 T10558 T10556 arg2Of 2C,(
R7727 T10558 T10557 arg1Of 2C,Fig.
R7728 T10559 T10556 arg3Of ),(
R7729 T10562 T10560 arg1Of promoter,The
R7730 T10562 T10561 arg1Of promoter,proximal
R7731 T10562 T10563 arg1Of promoter,(
R7732 T10562 T10567 arg1Of promoter,","
R7733 T10562 T10568 arg1Of promoter,which
R7734 T10562 T10569 arg1Of promoter,contains
R7735 T10562 T10576 arg1Of promoter,exhibited
R7736 T10565 T10563 arg2Of E,(
R7737 T10565 T10564 arg1Of E,Region
R7738 T10566 T10563 arg3Of ),(
R7739 T10574 T10569 arg2Of element,contains
R7740 T10574 T10570 arg1Of element,the
R7741 T10574 T10571 arg1Of element,essential
R7742 T10574 T10572 arg1Of element,LPS
R7743 T10574 T10573 arg1Of element,response
R7744 T10576 T10575 arg1Of exhibited,","
R7745 T10579 T10576 arg2Of homology,exhibited
R7746 T10579 T10577 arg1Of homology,the
R7747 T10579 T10578 arg1Of homology,greatest
R7748 T10581 T10580 arg1Of analysis,Further
R7749 T10581 T10582 arg1Of analysis,of
R7750 T10581 T10585 arg1Of analysis,revealed
R7751 T10584 T10582 arg2Of E,of
R7752 T10584 T10583 arg1Of E,Region
R7753 T10587 T10588 arg1Of several,of
R7754 T10587 T10600 arg1Of several,are
R7755 T10587 T10601 arg2Of several,conserved
R7756 T10592 T10588 arg2Of elements,of
R7757 T10592 T10589 arg1Of elements,the
R7758 T10592 T10590 arg1Of elements,cis-acting
R7759 T10592 T10591 arg1Of elements,regulatory
R7760 T10592 T10593 arg2Of elements,defined
R7761 T10593 T10594 arg1Of defined,in
R7762 T10599 T10594 arg2Of promoter,in
R7763 T10599 T10595 arg1Of promoter,the
R7764 T10599 T10596 arg1Of promoter,human
R7765 T10599 T10597 arg1Of promoter,SerpinB2
R7766 T10599 T10598 arg1Of promoter,proximal
R7767 T10601 T10585 arg2Of conserved,revealed
R7768 T10601 T10586 arg1Of conserved,that
R7769 T10601 T10600 arg2Of conserved,are
R7770 T10601 T10602 arg1Of conserved,in
R7771 T10606 T10602 arg2Of promoter,in
R7772 T10606 T10603 arg1Of promoter,the
R7773 T10606 T10604 arg1Of promoter,murine
R7774 T10606 T10605 arg1Of promoter,SerpinB2
R7775 T10606 T10607 arg1Of promoter,(
R7776 T10608 T10607 arg2Of Fig.,(
R7777 T10608 T10609 arg1Of Fig.,3
R7778 T10610 T10607 arg3Of ),(
R7779 T10616 T10613 arg1Of sequence,a
R7780 T10616 T10614 arg1Of sequence,TATA
R7781 T10616 T10615 arg1Of sequence,consensus
R7782 T10616 T10617 arg1Of sequence,is
R7783 T10616 T10618 arg1Of sequence,located
R7784 T10617 T10611 arg1Of is,Specifically
R7785 T10617 T10612 arg1Of is,","
R7786 T10617 T10642 arg1Of is,[
R7787 T10617 T10645 arg1Of is,;
R7788 T10617 T10646 arg1Of is,[
R7789 T10618 T10617 arg2Of located,is
R7790 T10618 T10619 arg1Of located,23
R7791 T10619 T10620 modOf 23,to
R7792 T10619 T10621 arg1Of 23,29bp
R7793 T10619 T10637 arg1Of 23,of
R7794 T10621 T10620 arg1Of 29bp,to
R7795 T10621 T10622 arg1Of 29bp,upstream
R7796 T10621 T10623 arg1Of 29bp,from
R7797 T10627 T10623 arg2Of site,from
R7798 T10627 T10624 arg1Of site,the
R7799 T10627 T10625 arg1Of site,transcription
R7800 T10627 T10626 arg1Of site,initiation
R7801 T10627 T10628 arg1Of site,","
R7802 T10627 T10629 arg1Of site,similar
R7803 T10629 T10630 arg1Of similar,to
R7804 T10632 T10630 arg2Of position,to
R7805 T10632 T10631 arg1Of position,the
R7806 T10632 T10633 arg1Of position,of
R7807 T10636 T10633 arg2Of box,of
R7808 T10636 T10634 arg1Of box,the
R7809 T10636 T10635 arg1Of box,TATA
R7810 T10641 T10637 arg2Of gene,of
R7811 T10641 T10638 arg1Of gene,the
R7812 T10641 T10639 arg1Of gene,human
R7813 T10641 T10640 arg1Of gene,SERPINB2
R7814 T10643 T10642 arg2Of 53,[
R7815 T10644 T10642 arg3Of ],[
R7816 T10647 T10646 arg2Of 54,[
R7817 T10648 T10646 arg3Of ],[
R7818 T10656 T10655 arg2Of C/EBP,(
R7819 T10657 T10655 arg3Of ),(
R7820 T10658 T10649 arg1Of site,A
R7821 T10658 T10650 arg1Of site,putative
R7822 T10658 T10651 arg1Of site,CCAAT
R7823 T10658 T10652 arg1Of site,enhancer
R7824 T10658 T10653 arg1Of site,binding
R7825 T10658 T10654 arg1Of site,protein
R7826 T10658 T10655 arg1Of site,(
R7827 T10658 T10659 arg1Of site,is
R7828 T10658 T10660 arg1Of site,present
R7829 T10660 T10659 arg2Of present,is
R7830 T10660 T10661 arg1Of present,at
R7831 T10662 T10661 arg2Of −192/−203,at
R7832 T10670 T10669 arg2Of AP-1,(
R7833 T10671 T10669 arg3Of ),(
R7834 T10673 T10664 arg1Of sites,two
R7835 T10673 T10665 arg1Of sites,potential
R7836 T10673 T10666 arg1Of sites,activator
R7837 T10673 T10667 arg1Of sites,protein
R7838 T10673 T10668 arg1Of sites,1
R7839 T10673 T10669 arg1Of sites,(
R7840 T10673 T10672 arg1Of sites,binding
R7841 T10673 T10674 arg1Of sites,are
R7842 T10673 T10675 arg2Of sites,found
R7843 T10675 T10674 arg2Of found,are
R7844 T10675 T10676 arg1Of found,at
R7845 T10675 T10682 arg1Of found,and
R7846 T10678 T10679 arg1Of −88/−94,and
R7847 T10679 T10676 arg2Of and,at
R7848 T10679 T10677 arg1Of and,nucleotides
R7849 T10680 T10679 arg2Of −100/−106,and
R7850 T10682 T10659 arg3Of and,is
R7851 T10682 T10663 arg1Of and,","
R7852 T10682 T10681 arg1Of and,","
R7853 T10688 T10683 arg1Of element,a
R7854 T10688 T10684 arg1Of element,putative
R7855 T10688 T10685 arg1Of element,cyclic
R7856 T10688 T10686 arg1Of element,AMP
R7857 T10688 T10687 arg1Of element,response
R7858 T10688 T10689 arg1Of element,(
R7859 T10688 T10692 arg1Of element,is
R7860 T10688 T10693 arg1Of element,present
R7861 T10690 T10689 arg2Of CRE,(
R7862 T10691 T10689 arg3Of ),(
R7863 T10692 T10682 arg2Of is,and
R7864 T10693 T10692 arg2Of present,is
R7865 T10693 T10694 arg1Of present,at
R7866 T10695 T10694 arg2Of −172/−177,at
R7867 T10696 T10697 arg1Of Both,of
R7868 T10696 T10701 arg1Of Both,are
R7869 T10696 T10702 arg1Of Both,identical
R7870 T10700 T10697 arg2Of sites,of
R7871 T10700 T10698 arg1Of sites,the
R7872 T10700 T10699 arg1Of sites,AP-1
R7873 T10701 T10714 arg1Of are,and
R7874 T10702 T10701 arg2Of identical,are
R7875 T10702 T10703 arg1Of identical,in
R7876 T10702 T10705 arg1Of identical,to
R7877 T10704 T10703 arg2Of sequence,in
R7878 T10706 T10705 arg2Of those,to
R7879 T10706 T10707 arg2Of those,identified
R7880 T10707 T10708 arg1Of identified,in
R7881 T10712 T10708 arg2Of promoter,in
R7882 T10712 T10709 arg1Of promoter,the
R7883 T10712 T10710 arg1Of promoter,human
R7884 T10712 T10711 arg1Of promoter,SERPINB2
R7885 T10714 T10713 arg1Of and,","
R7886 T10716 T10715 arg1Of CRE,the
R7887 T10716 T10717 arg1Of CRE,differs
R7888 T10717 T10714 arg2Of differs,and
R7889 T10717 T10718 arg1Of differs,in
R7890 T10717 T10729 arg1Of differs,;
R7891 T10717 T10730 arg1Of differs,[
R7892 T10720 T10718 arg2Of identity,in
R7893 T10720 T10719 arg1Of identity,the
R7894 T10720 T10721 arg1Of identity,of
R7895 T10725 T10721 arg2Of nucleotide,of
R7896 T10725 T10722 arg1Of nucleotide,a
R7897 T10725 T10723 arg1Of nucleotide,single
R7898 T10725 T10724 arg1Of nucleotide,central
R7899 T10725 T10726 arg1Of nucleotide,[
R7900 T10727 T10726 arg2Of 37,[
R7901 T10728 T10726 arg3Of ],[
R7902 T10731 T10730 arg2Of 55,[
R7903 T10732 T10730 arg3Of ],[
R7904 T10736 T10734 arg1Of box,consensus
R7905 T10736 T10735 arg1Of box,E
R7906 T10736 T10737 arg1Of box,(
R7907 T10736 T10743 arg1Of box,as
R7908 T10738 T10737 arg2Of −538/−533,(
R7909 T10739 T10737 arg3Of ),(
R7910 T10743 T10733 arg1Of as,A
R7911 T10743 T10740 arg1Of as,","
R7912 T10743 T10741 arg1Of as,as
R7913 T10743 T10742 arg1Of as,well
R7914 T10743 T10757 arg1Of as,were
R7915 T10743 T10759 arg2Of as,identified
R7916 T10746 T10743 arg2Of sites,as
R7917 T10746 T10744 arg1Of sites,potential
R7918 T10746 T10745 arg1Of sites,binding
R7919 T10746 T10747 arg1Of sites,for
R7920 T10748 T10749 arg1Of PU.1,(
R7921 T10748 T10752 arg1Of PU.1,and
R7922 T10750 T10749 arg2Of −412/−407,(
R7923 T10751 T10749 arg3Of ),(
R7924 T10752 T10747 arg2Of and,for
R7925 T10753 T10752 arg2Of Oct-1,and
R7926 T10753 T10754 arg1Of Oct-1,(
R7927 T10755 T10754 arg2Of −296/−288,(
R7928 T10756 T10754 arg3Of ),(
R7929 T10759 T10757 arg2Of identified,were
R7930 T10759 T10758 arg1Of identified,also
R7931 T10759 T10760 arg1Of identified,within
R7932 T10764 T10760 arg2Of region,within
R7933 T10764 T10761 arg1Of region,the
R7934 T10764 T10762 arg1Of region,proximal
R7935 T10764 T10763 arg1Of region,promoter
R7936 T10764 T10765 arg1Of region,(
R7937 T10767 T10765 arg2Of S2,(
R7938 T10767 T10766 arg1Of S2,Fig.
R7939 T10768 T10765 arg3Of ),(
R7940 T10770 T10771 arg1Of upstream,","
R7941 T10776 T10771 arg2Of element,","
R7942 T10776 T10772 arg1Of element,a
R7943 T10776 T10773 arg1Of element,retinoic
R7944 T10776 T10774 arg1Of element,acid
R7945 T10776 T10775 arg1Of element,response
R7946 T10777 T10770 arg1Of at,upstream
R7947 T10778 T10777 arg2Of −1349/−1340,at
R7948 T10783 T10780 arg1Of element,a
R7949 T10783 T10781 arg1Of element,PAUSE-1
R7950 T10783 T10782 arg1Of element,silencer
R7951 T10783 T10784 arg1Of element,at
R7952 T10783 T10786 arg1Of element,and
R7953 T10785 T10784 arg2Of −1540/−1528,at
R7954 T10786 T10798 arg1Of and,are
R7955 T10786 T10801 arg2Of and,conserved
R7956 T10791 T10786 arg2Of site,and
R7957 T10791 T10787 arg1Of site,a
R7958 T10791 T10788 arg1Of site,NF-κB
R7959 T10791 T10789 arg1Of site,p65
R7960 T10791 T10790 arg1Of site,binding
R7961 T10791 T10792 arg1Of site,at
R7962 T10793 T10792 arg2Of −1342/−1351,at
R7963 T10793 T10794 arg1Of −1342/−1351,(
R7964 T10796 T10794 arg2Of S2,(
R7965 T10796 T10795 arg1Of S2,Fig.
R7966 T10797 T10794 arg3Of ),(
R7967 T10801 T10769 arg1Of conserved,Further
R7968 T10801 T10777 arg1Of conserved,at
R7969 T10801 T10779 arg1Of conserved,","
R7970 T10801 T10798 arg2Of conserved,are
R7971 T10801 T10799 arg1Of conserved,also
R7972 T10801 T10800 arg1Of conserved,well
R7973 T10801 T10802 arg1Of conserved,[
R7974 T10801 T10805 arg1Of conserved,;
R7975 T10801 T10806 arg1Of conserved,[
R7976 T10801 T10809 arg1Of conserved,;
R7977 T10801 T10810 arg1Of conserved,[
R7978 T10803 T10802 arg2Of 16,[
R7979 T10804 T10802 arg3Of ],[
R7980 T10807 T10806 arg2Of 30,[
R7981 T10808 T10806 arg3Of ],[
R7982 T10811 T10810 arg2Of 56,[
R7983 T10812 T10810 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T10428 1560-1565 Protein denotes Oct-1
T10427 1539-1543 Protein denotes PU.1
T10426 1371-1379 Protein denotes SERPINB2
T10425 1006-1014 Protein denotes SERPINB2
T10424 814-822 Protein denotes SerpinB2
T10423 759-767 Protein denotes SerpinB2
T10422 348-356 Protein denotes SerpinB2
T10421 160-168 Protein denotes SerpinB2
T10420 89-97 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10844 814-822 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T10843 759-767 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T10842 348-356 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T10841 160-168 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T10840 89-97 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T10851 1767-1770 http://www.uniprot.org/uniprot/P21579 denotes p65
T10850 1767-1770 http://www.uniprot.org/uniprot/Q04206 denotes p65
T10849 1539-1543 http://www.uniprot.org/uniprot/P17947 denotes PU.1
T10848 1301-1305 http://www.uniprot.org/uniprot/P05412 denotes AP-1
T10847 1144-1149 http://www.uniprot.org/uniprot/P05412 denotes 1 (AP
T10846 1371-1379 http://www.uniprot.org/uniprot/P05120 denotes SERPINB2
T10845 1006-1014 http://www.uniprot.org/uniprot/P05120 denotes SERPINB2

UBERON-AE

Id Subject Object Predicate Lexical cue
T10388 1438-1445 http://purl.obolibrary.org/obo/UBERON_0012131 denotes central

GO-BP

Id Subject Object Predicate Lexical cue
T10440 1675-1688 http://purl.obolibrary.org/obo/GO_0001101 denotes acid response
T10439 1666-1688 http://purl.obolibrary.org/obo/GO_0032526 denotes retinoic acid response
T10438 1666-1688 http://purl.obolibrary.org/obo/GO_0071300 denotes retinoic acid response
T10437 1230-1249 http://purl.obolibrary.org/obo/GO_0051591 denotes cyclic AMP response
T10436 1230-1249 http://purl.obolibrary.org/obo/GO_0071320 denotes cyclic AMP response
T10435 357-372 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T10434 334-344 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T10433 594-606 http://purl.obolibrary.org/obo/GO_0032496 denotes LPS response
T10432 111-126 http://purl.obolibrary.org/obo/GO_0032496 denotes response to LPS
T10431 922-935 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T10430 259-272 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T10429 61-74 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T10452 1058-1076 http://purl.obolibrary.org/obo/GO_0008022 denotes binding protein (C
T10451 1058-1073 http://purl.obolibrary.org/obo/GO_0005515 denotes binding protein
T10450 1049-1065 http://purl.obolibrary.org/obo/GO_0035326 denotes enhancer binding
T10449 1771-1778 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T10448 1521-1528 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T10447 1153-1160 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T10446 1058-1065 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T10445 280-287 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T10444 259-287 http://purl.obolibrary.org/obo/GO_0070491 denotes transcription factor binding
T10443 259-287 http://purl.obolibrary.org/obo/GO_0043425 denotes transcription factor binding
T10442 259-287 http://purl.obolibrary.org/obo/GO_0033613 denotes transcription factor binding
T10441 259-287 http://purl.obolibrary.org/obo/GO_0008134 denotes transcription factor binding

sentences

Id Subject Object Predicate Lexical cue
T10399 1646-1850 Sentence denotes Further upstream, a retinoic acid response element at −1349/−1340, a PAUSE-1 silencer element at −1540/−1528 and a NF-κB p65 binding site at −1342/−1351 (Fig. S2) are also well conserved [16]; [30]; [56].
T10398 1469-1645 Sentence denotes A consensus E box (−538/−533), as well as potential binding sites for PU.1 (−412/−407) and Oct-1 (−296/−288) were also identified within the proximal promoter region (Fig. S2).
T10397 1289-1468 Sentence denotes Both of the AP-1 sites are identical in sequence to those identified in the human SERPINB2 promoter, and the CRE differs in the identity of a single central nucleotide [37]; [55].
T10396 1032-1288 Sentence denotes A putative CCAAT enhancer binding protein (C/EBP) site is present at −192/−203, two potential activator protein 1 (AP-1) binding sites are found at nucleotides −88/−94 and −100/−106, and a putative cyclic AMP response element (CRE) is present at −172/−177.
T10395 842-1031 Sentence denotes Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54].
T10394 649-841 Sentence denotes Further analysis of Region E revealed that several of the cis-acting regulatory elements defined in the human SerpinB2 proximal promoter are conserved in the murine SerpinB2 promoter (Fig. 3).
T10393 531-648 Sentence denotes The proximal promoter (Region E), which contains the essential LPS response element, exhibited the greatest homology.
T10392 379-530 Sentence denotes The presence of several repetitive sequence elements delineated five broadly homologous regions (A-E) between the human and murine promoters (Fig. 2C).
T10391 190-378 Sentence denotes We reasoned that the presence of evolutionarily conserved, potential transcription factor binding sites in this region might play a role in the regulation of SerpinB2 gene expression [52].
T10390 0-189 Sentence denotes To look for potential cis-acting elements that might mediate transcription of the murine SerpinB2 gene and the response to LPS, we aligned the murine and human SerpinB2 5′ flanking regions.
T141 0-189 Sentence denotes To look for potential cis-acting elements that might mediate transcription of the murine SerpinB2 gene and the response to LPS, we aligned the murine and human SerpinB2 5′ flanking regions.
T142 190-378 Sentence denotes We reasoned that the presence of evolutionarily conserved, potential transcription factor binding sites in this region might play a role in the regulation of SerpinB2 gene expression [52].
T143 379-530 Sentence denotes The presence of several repetitive sequence elements delineated five broadly homologous regions (A-E) between the human and murine promoters (Fig. 2C).
T144 531-648 Sentence denotes The proximal promoter (Region E), which contains the essential LPS response element, exhibited the greatest homology.
T145 649-841 Sentence denotes Further analysis of Region E revealed that several of the cis-acting regulatory elements defined in the human SerpinB2 proximal promoter are conserved in the murine SerpinB2 promoter (Fig. 3).
T146 842-1031 Sentence denotes Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54].
T147 1032-1288 Sentence denotes A putative CCAAT enhancer binding protein (C/EBP) site is present at −192/−203, two potential activator protein 1 (AP-1) binding sites are found at nucleotides −88/−94 and −100/−106, and a putative cyclic AMP response element (CRE) is present at −172/−177.
T148 1289-1468 Sentence denotes Both of the AP-1 sites are identical in sequence to those identified in the human SERPINB2 promoter, and the CRE differs in the identity of a single central nucleotide [37]; [55].
T149 1469-1645 Sentence denotes A consensus E box (−538/−533), as well as potential binding sites for PU.1 (−412/−407) and Oct-1 (−296/−288) were also identified within the proximal promoter region (Fig. S2).
T150 1646-1850 Sentence denotes Further upstream, a retinoic acid response element at −1349/−1340, a PAUSE-1 silencer element at −1540/−1528 and a NF-κB p65 binding site at −1342/−1351 (Fig. S2) are also well conserved [16]; [30]; [56].

simple1

Id Subject Object Predicate Lexical cue
T10462 1560-1565 Protein denotes Oct-1
T10461 1539-1543 Protein denotes PU.1
T10460 1371-1379 Protein denotes SERPINB2
T10459 1006-1014 Protein denotes SERPINB2
T10458 814-822 Protein denotes SerpinB2
T10457 759-767 Protein denotes SerpinB2
T10456 348-356 Protein denotes SerpinB2
T10455 160-168 Protein denotes SerpinB2
T10454 89-97 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10838 322-326 Regulation denotes role
T10837 362-372 Gene_expression denotes expression
T10836 334-344 Regulation denotes regulation
T10835 53-60 Positive_regulation denotes mediate
T10834 61-74 Transcription denotes transcription
T10833 111-119 Regulation denotes response
T10832 1539-1543 Protein denotes PU.1
T10831 1560-1565 Protein denotes Oct-1
T10830 1371-1379 Protein denotes SERPINB2
T10829 1006-1014 Protein denotes SERPINB2
T10828 814-822 Protein denotes SerpinB2
T10827 759-767 Protein denotes SerpinB2
T10826 348-356 Protein denotes SerpinB2
T10825 160-168 Protein denotes SerpinB2
T10824 89-97 Protein denotes SerpinB2
R7985 T10824 T10834 themeOf SerpinB2,transcription
R7986 T10824 T10833 themeOf SerpinB2,response
R7987 T10826 T10837 themeOf SerpinB2,expression
R7988 T10834 T10835 themeOf transcription,mediate
R7989 T10836 T10838 themeOf regulation,role
R7990 T10837 T10836 themeOf expression,regulation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T10893 1521-1528 Binding denotes binding
T10892 322-326 Regulation denotes role
T10891 362-372 Gene_expression denotes expression
T10890 334-344 Regulation denotes regulation
T10889 53-60 Positive_regulation denotes mediate
T10888 61-74 Transcription denotes transcription
T10887 1539-1543 Protein denotes PU.1
T10886 1560-1565 Protein denotes Oct-1
T10885 1371-1379 Protein denotes SERPINB2
T10884 1006-1014 Protein denotes SERPINB2
T10883 814-822 Protein denotes SerpinB2
T10882 759-767 Protein denotes SerpinB2
T10881 348-356 Protein denotes SerpinB2
T10880 160-168 Protein denotes SerpinB2
T10879 89-97 Protein denotes SerpinB2
R8000 T10879 T10888 themeOf SerpinB2,transcription
R8001 T10881 T10891 themeOf SerpinB2,expression
R8002 T10886 T10893 themeOf Oct-1,binding
R8003 T10887 T10893 themeOf PU.1,binding
R8004 T10888 T10889 themeOf transcription,mediate
R8005 T10890 T10892 themeOf regulation,role
R8006 T10891 T10890 themeOf expression,regulation

DLUT931

Id Subject Object Predicate Lexical cue
T10877 1521-1528 Binding denotes binding
T10876 322-326 Regulation denotes role
T10875 334-344 Regulation denotes regulation
T10874 362-372 Gene_expression denotes expression
T10873 53-60 Positive_regulation denotes mediate
T10872 61-74 Transcription denotes transcription
T10871 1539-1543 Protein denotes PU.1
T10870 1560-1565 Protein denotes Oct-1
T10869 1371-1379 Protein denotes SERPINB2
T10868 1006-1014 Protein denotes SERPINB2
T10867 814-822 Protein denotes SerpinB2
T10866 759-767 Protein denotes SerpinB2
T10865 348-356 Protein denotes SerpinB2
T10864 160-168 Protein denotes SerpinB2
T10863 89-97 Protein denotes SerpinB2
R7991 T10863 T10872 themeOf SerpinB2,transcription
R7992 T10865 T10874 themeOf SerpinB2,expression
R7993 T10870 T10877 themeOf Oct-1,binding
R7994 T10870 T10877 themeOf Oct-1,binding
R7995 T10871 T10877 themeOf PU.1,binding
R7996 T10871 T10877 themeOf PU.1,binding
R7997 T10872 T10873 themeOf transcription,mediate
R7998 T10874 T10875 themeOf expression,regulation
R7999 T10875 T10876 themeOf regulation,role

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10977 345-377 Gene_expression denotes of SerpinB2 gene expression [52]
T10976 330-377 Regulation denotes the regulation of SerpinB2 gene expression [52]
T10975 1511-1565 Binding denotes potential binding sites for PU.1 (−412/−407) and Oct-1
T10974 1006-1014 Protein denotes SERPINB2
T10973 918-979 Entity denotes the transcription initiation site, similar to the position of
T10972 89-97 Protein denotes SerpinB2
T10971 12-32 Protein denotes potential cis-acting
T10970 1066-1081 Protein denotes protein (C/EBP)
T10969 1075-1080 Protein denotes C/EBP
T10968 1294-1311 Entity denotes of the AP-1 sites
T10967 531-564 Entity denotes The proximal promoter (Region E),
T10966 1259-1262 Protein denotes CRE
T10965 1779-1783 Entity denotes site
T10964 1539-1555 Protein denotes PU.1 (−412/−407)
T10963 803-840 Entity denotes the murine SerpinB2 promoter (Fig. 3)
T10962 348-356 Protein denotes SerpinB2
T10961 1636-1639 Protein denotes Fig
T10960 160-168 Protein denotes SerpinB2
T10959 759-767 Protein denotes SerpinB2
T10958 594-597 Entity denotes LPS
T10957 1511-1565 Entity denotes potential binding sites for PU.1 (−412/−407) and Oct-1
T10956 1237-1240 Entity denotes AMP
T10955 1112-1152 Protein denotes two potential activator protein 1 (AP-1)
T10954 1289-1311 Entity denotes Both of the AP-1 sites
T10953 1606-1627 Entity denotes the proximal promoter
T10951 1361-1389 Entity denotes the human SERPINB2 promoter,
T10950 1800-1807 Entity denotes Fig. S2
T10949 1301-1305 Protein denotes AP-1
T10948 1481-1498 Entity denotes E box (−538/−533)
T10947 1394-1401 Protein denotes the CRE
T10946 1371-1379 Protein denotes SERPINB2
T10945 1560-1565 Protein denotes Oct-1
T10944 980-1024 Entity denotes the TATA box of the human SERPINB2 gene [53]
T10943 78-102 Protein denotes the murine SerpinB2 gene
T10942 749-785 Entity denotes the human SerpinB2 proximal promoter
T10941 814-822 Protein denotes SerpinB2
T10940 503-519 Entity denotes murine promoters
T10939 249-293 Entity denotes potential transcription factor binding sites
T10938 993-1024 Protein denotes of the human SERPINB2 gene [53]
T10937 1147-1151 Protein denotes AP-1
T10935 1429-1461 Entity denotes a single central nucleotide [37]
T10934 1646-1679 Entity denotes Further upstream, a retinoic acid
R8021 T10957 T10975 themeOf potential binding sites for PU.1 (−412/−407) and Oct-1,potential binding sites for PU.1 (−412/−407) and Oct-1
R8022 T10962 T10977 themeOf SerpinB2,of SerpinB2 gene expression [52]
R8023 T10977 T10976 themeOf of SerpinB2 gene expression [52],the regulation of SerpinB2 gene expression [52]

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T10913 1761-1770 Protein denotes NF-κB p65
T10912 1521-1528 Binding denotes binding
T10911 1560-1565 Protein denotes Oct-1
T10910 1289-1293 Gene_expression denotes Both
T10909 1365-1388 Protein denotes human SERPINB2 promoter
T10908 1301-1311 Protein denotes AP-1 sites
T10907 1116-1145 Protein denotes potential activator protein 1
T10906 1075-1080 Protein denotes C/EBP
T10905 1043-1073 Protein denotes CCAAT enhancer binding protein
T10904 833-836 Protein denotes Fig
T10903 807-831 Protein denotes murine SerpinB2 promoter
T10902 753-785 Protein denotes human SerpinB2 proximal promoter
T10901 334-344 Regulation denotes regulation
T10900 362-372 Gene_expression denotes expression
T10899 348-361 Protein denotes SerpinB2 gene
T10898 53-60 Positive_regulation denotes mediate
T10897 61-74 Transcription denotes transcription
T10896 82-102 Protein denotes murine SerpinB2 gene
R8008 T10896 T10897 themeOf murine SerpinB2 gene,transcription
R8009 T10897 T10898 themeOf transcription,mediate
R8010 T10899 T10900 themeOf SerpinB2 gene,expression
R8011 T10900 T10901 themeOf expression,regulation
R8012 T10908 T10910 themeOf AP-1 sites,Both
R8013 T10911 T10912 themeOf Oct-1,binding

testone

Id Subject Object Predicate Lexical cue
T10362 334-344 Regulation denotes regulation
T10361 1560-1565 Protein denotes Oct-1
T10360 1539-1543 Protein denotes PU.1
T10359 1371-1379 Protein denotes SERPINB2
T10358 1006-1014 Protein denotes SERPINB2
T10357 814-822 Protein denotes SerpinB2
T10356 759-767 Protein denotes SerpinB2
T10355 348-356 Protein denotes SerpinB2
T10354 160-168 Protein denotes SerpinB2
T10353 89-97 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T10387 1771-1778 Binding denotes binding
T10386 1560-1565 Protein denotes Oct-1
T10385 1539-1543 Protein denotes PU.1
T10384 1371-1379 Protein denotes SERPINB2
T10383 1006-1014 Protein denotes SERPINB2
T10382 814-822 Protein denotes SerpinB2
T10381 759-767 Protein denotes SerpinB2
T10380 362-372 Gene_expression denotes expression
T10379 348-356 Protein denotes SerpinB2
T10378 334-344 Regulation denotes regulation
T10377 322-326 Regulation denotes role
T10376 280-293 Entity denotes binding sites
T10375 160-168 Protein denotes SerpinB2
T10374 89-97 Protein denotes SerpinB2
T10372 1560-1565 Protein denotes Oct-1
T10371 1539-1543 Protein denotes PU.1
T10370 1371-1379 Protein denotes SERPINB2
T10369 1006-1014 Protein denotes SERPINB2
T10368 814-822 Protein denotes SerpinB2
T10367 759-767 Protein denotes SerpinB2
T10366 348-356 Protein denotes SerpinB2
T10365 160-168 Protein denotes SerpinB2
T10364 89-97 Protein denotes SerpinB2
R7618 T10379 T10380 themeOf SerpinB2,expression
R7619 T10380 T10378 themeOf expression,regulation