PMC:3589482 / 20612-20822 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T23161","span":{"begin":209,"end":210},"obj":"."},{"id":"T23160","span":{"begin":202,"end":209},"obj":"NNS"},{"id":"T23159","span":{"begin":198,"end":201},"obj":"NNP"},{"id":"T23158","span":{"begin":182,"end":197},"obj":"NN"},{"id":"T23157","span":{"begin":173,"end":181},"obj":"JJ"},{"id":"T23156","span":{"begin":168,"end":172},"obj":"IN"},{"id":"T23155","span":{"begin":165,"end":167},"obj":"CC"},{"id":"T23154","span":{"begin":159,"end":164},"obj":"NNS"},{"id":"T23153","span":{"begin":152,"end":158},"obj":"NN"},{"id":"T23152","span":{"begin":140,"end":151},"obj":"NN"},{"id":"T23151","span":{"begin":134,"end":139},"obj":"VBG"},{"id":"T23150","span":{"begin":124,"end":133},"obj":"VBN"},{"id":"T23149","span":{"begin":119,"end":123},"obj":"VBD"},{"id":"T23148","span":{"begin":109,"end":118},"obj":"NNS"},{"id":"T23147","span":{"begin":107,"end":108},"obj":"NN"},{"id":"T23146","span":{"begin":106,"end":107},"obj":"CD"},{"id":"T23145","span":{"begin":102,"end":105},"obj":"CC"},{"id":"T23144","span":{"begin":97,"end":101},"obj":"NN"},{"id":"T23143","span":{"begin":88,"end":96},"obj":"NN"},{"id":"T23142","span":{"begin":77,"end":87},"obj":"NN"},{"id":"T23141","span":{"begin":73,"end":76},"obj":"DT"},{"id":"T23140","span":{"begin":70,"end":72},"obj":"IN"},{"id":"T23139","span":{"begin":61,"end":69},"obj":"RB"},{"id":"T23138","span":{"begin":52,"end":60},"obj":"VBN"},{"id":"T23137","span":{"begin":48,"end":51},"obj":"VBD"},{"id":"T23136","span":{"begin":44,"end":47},"obj":"CD"},{"id":"T23135","span":{"begin":41,"end":43},"obj":"TO"},{"id":"T23134","span":{"begin":36,"end":40},"obj":"CD"},{"id":"T23133","span":{"begin":35,"end":36},"obj":"CD"},{"id":"T23132","span":{"begin":30,"end":34},"obj":"IN"},{"id":"T23131","span":{"begin":23,"end":29},"obj":"NN"},{"id":"T23130","span":{"begin":14,"end":22},"obj":"NN"},{"id":"T23129","span":{"begin":12,"end":13},"obj":"NN"},{"id":"T23128","span":{"begin":11,"end":12},"obj":"CD"},{"id":"T23127","span":{"begin":4,"end":10},"obj":"NN"},{"id":"T23126","span":{"begin":0,"end":3},"obj":"DT"}],"relations":[{"id":"R16625","pred":"det","subj":"T23126","obj":"T23131"},{"id":"R16626","pred":"amod","subj":"T23127","obj":"T23131"},{"id":"R16627","pred":"nummod","subj":"T23128","obj":"T23129"},{"id":"R16628","pred":"compound","subj":"T23129","obj":"T23131"},{"id":"R16629","pred":"compound","subj":"T23130","obj":"T23131"},{"id":"R16630","pred":"nsubjpass","subj":"T23131","obj":"T23138"},{"id":"R16631","pred":"prep","subj":"T23132","obj":"T23131"},{"id":"R16632","pred":"pobj","subj":"T23133","obj":"T23132"},{"id":"R16633","pred":"nsubjpass","subj":"T23134","obj":"T23138"},{"id":"R16634","pred":"prep","subj":"T23135","obj":"T23138"},{"id":"R16635","pred":"pobj","subj":"T23136","obj":"T23135"},{"id":"R16636","pred":"auxpass","subj":"T23137","obj":"T23138"},{"id":"R16637","pred":"ROOT","subj":"T23138","obj":"T23138"},{"id":"R16638","pred":"advmod","subj":"T23139","obj":"T23138"},{"id":"R16639","pred":"prep","subj":"T23140","obj":"T23139"},{"id":"R16640","pred":"det","subj":"T23141","obj":"T23144"},{"id":"R16641","pred":"compound","subj":"T23142","obj":"T23144"},{"id":"R16642","pred":"compound","subj":"T23143","obj":"T23144"},{"id":"R16643","pred":"pobj","subj":"T23144","obj":"T23140"},{"id":"R16644","pred":"cc","subj":"T23145","obj":"T23139"},{"id":"R16645","pred":"nummod","subj":"T23146","obj":"T23148"},{"id":"R16646","pred":"compound","subj":"T23147","obj":"T23148"},{"id":"R16647","pred":"nsubjpass","subj":"T23148","obj":"T23150"},{"id":"R16648","pred":"auxpass","subj":"T23149","obj":"T23150"},{"id":"R16649","pred":"conj","subj":"T23150","obj":"T23138"},{"id":"R16650","pred":"advcl","subj":"T23151","obj":"T23150"},{"id":"R16651","pred":"compound","subj":"T23152","obj":"T23154"},{"id":"R16652","pred":"compound","subj":"T23153","obj":"T23154"},{"id":"R16653","pred":"dobj","subj":"T23154","obj":"T23151"},{"id":"R16654","pred":"cc","subj":"T23155","obj":"T23151"},{"id":"R16655","pred":"prep","subj":"T23156","obj":"T23150"},{"id":"R16656","pred":"amod","subj":"T23157","obj":"T23160"},{"id":"R16657","pred":"amod","subj":"T23158","obj":"T23160"},{"id":"R16658","pred":"compound","subj":"T23159","obj":"T23160"},{"id":"R16659","pred":"pobj","subj":"T23160","obj":"T23156"},{"id":"R16660","pred":"punct","subj":"T23161","obj":"T23150"}],"text":"The murine 5′ flanking region from −4480 to +92 was inserted upstream of the luciferase reporter gene and 5′ deletions were generated using restriction enzyme sites or with specific oligonucleotide PCR primers."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T22789","span":{"begin":202,"end":209},"obj":"NN"},{"id":"T22788","span":{"begin":198,"end":201},"obj":"NN"},{"id":"T22787","span":{"begin":182,"end":197},"obj":"NN"},{"id":"T22786","span":{"begin":173,"end":181},"obj":"JJ"},{"id":"T22785","span":{"begin":168,"end":172},"obj":"IN"},{"id":"T22784","span":{"begin":165,"end":167},"obj":"CC"},{"id":"T22783","span":{"begin":159,"end":164},"obj":"NN"},{"id":"T22782","span":{"begin":152,"end":158},"obj":"NN"},{"id":"T22781","span":{"begin":140,"end":151},"obj":"NN"},{"id":"T22780","span":{"begin":134,"end":139},"obj":"VB"},{"id":"T22779","span":{"begin":124,"end":133},"obj":"VB"},{"id":"T22778","span":{"begin":119,"end":123},"obj":"VB"},{"id":"T22777","span":{"begin":109,"end":118},"obj":"NN"},{"id":"T22776","span":{"begin":106,"end":108},"obj":"NN"},{"id":"T22775","span":{"begin":102,"end":105},"obj":"CC"},{"id":"T22774","span":{"begin":97,"end":101},"obj":"NN"},{"id":"T22773","span":{"begin":88,"end":96},"obj":"NN"},{"id":"T22772","span":{"begin":77,"end":87},"obj":"NN"},{"id":"T22771","span":{"begin":73,"end":76},"obj":"DT"},{"id":"T22770","span":{"begin":70,"end":72},"obj":"IN"},{"id":"T22769","span":{"begin":61,"end":69},"obj":"RB"},{"id":"T22768","span":{"begin":52,"end":60},"obj":"VB"},{"id":"T22767","span":{"begin":48,"end":51},"obj":"VB"},{"id":"T22766","span":{"begin":44,"end":47},"obj":"CD"},{"id":"T22765","span":{"begin":41,"end":43},"obj":"TO"},{"id":"T22764","span":{"begin":35,"end":40},"obj":"CD"},{"id":"T22763","span":{"begin":30,"end":34},"obj":"IN"},{"id":"T22762","span":{"begin":23,"end":29},"obj":"NN"},{"id":"T22761","span":{"begin":14,"end":22},"obj":"NN"},{"id":"T22760","span":{"begin":11,"end":13},"obj":"NN"},{"id":"T22759","span":{"begin":4,"end":10},"obj":"JJ"},{"id":"T22758","span":{"begin":0,"end":3},"obj":"DT"}],"relations":[{"id":"R16377","pred":"arg1Of","subj":"T22762","obj":"T22758"},{"id":"R16378","pred":"arg1Of","subj":"T22762","obj":"T22759"},{"id":"R16379","pred":"arg1Of","subj":"T22762","obj":"T22760"},{"id":"R16380","pred":"arg1Of","subj":"T22762","obj":"T22761"},{"id":"R16381","pred":"arg1Of","subj":"T22762","obj":"T22763"},{"id":"R16382","pred":"arg1Of","subj":"T22762","obj":"T22767"},{"id":"R16383","pred":"arg2Of","subj":"T22762","obj":"T22768"},{"id":"R16384","pred":"arg2Of","subj":"T22764","obj":"T22763"},{"id":"R16385","pred":"arg1Of","subj":"T22764","obj":"T22765"},{"id":"R16386","pred":"arg2Of","subj":"T22766","obj":"T22765"},{"id":"R16387","pred":"arg2Of","subj":"T22768","obj":"T22767"},{"id":"R16388","pred":"arg1Of","subj":"T22768","obj":"T22769"},{"id":"R16389","pred":"arg1Of","subj":"T22768","obj":"T22775"},{"id":"R16390","pred":"arg1Of","subj":"T22769","obj":"T22770"},{"id":"R16391","pred":"arg2Of","subj":"T22774","obj":"T22770"},{"id":"R16392","pred":"arg1Of","subj":"T22774","obj":"T22771"},{"id":"R16393","pred":"arg1Of","subj":"T22774","obj":"T22772"},{"id":"R16394","pred":"arg1Of","subj":"T22774","obj":"T22773"},{"id":"R16395","pred":"arg1Of","subj":"T22777","obj":"T22776"},{"id":"R16396","pred":"arg1Of","subj":"T22777","obj":"T22778"},{"id":"R16397","pred":"arg2Of","subj":"T22777","obj":"T22779"},{"id":"R16398","pred":"arg2Of","subj":"T22779","obj":"T22775"},{"id":"R16399","pred":"arg2Of","subj":"T22779","obj":"T22778"},{"id":"R16400","pred":"arg3Of","subj":"T22780","obj":"T22779"},{"id":"R16401","pred":"arg1Of","subj":"T22780","obj":"T22784"},{"id":"R16402","pred":"arg1Of","subj":"T22780","obj":"T22785"},{"id":"R16403","pred":"arg2Of","subj":"T22783","obj":"T22780"},{"id":"R16404","pred":"arg1Of","subj":"T22783","obj":"T22781"},{"id":"R16405","pred":"arg1Of","subj":"T22783","obj":"T22782"},{"id":"R16406","pred":"arg2Of","subj":"T22789","obj":"T22785"},{"id":"R16407","pred":"arg1Of","subj":"T22789","obj":"T22786"},{"id":"R16408","pred":"arg1Of","subj":"T22789","obj":"T22787"},{"id":"R16409","pred":"arg1Of","subj":"T22789","obj":"T22788"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"The murine 5′ flanking region from −4480 to +92 was inserted upstream of the luciferase reporter gene and 5′ deletions were generated using restriction enzyme sites or with specific oligonucleotide PCR primers."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T22713","span":{"begin":77,"end":87},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"The murine 5′ flanking region from −4480 to +92 was inserted upstream of the luciferase reporter gene and 5′ deletions were generated using restriction enzyme sites or with specific oligonucleotide PCR primers."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T22984","span":{"begin":77,"end":87},"obj":"http://www.uniprot.org/uniprot/P08659"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"The murine 5′ flanking region from −4480 to +92 was inserted upstream of the luciferase reporter gene and 5′ deletions were generated using restriction enzyme sites or with specific oligonucleotide PCR primers."}

    sentences

    {"project":"sentences","denotations":[{"id":"T22692","span":{"begin":0,"end":210},"obj":"Sentence"},{"id":"T132","span":{"begin":0,"end":210},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The murine 5′ flanking region from −4480 to +92 was inserted upstream of the luciferase reporter gene and 5′ deletions were generated using restriction enzyme sites or with specific oligonucleotide PCR primers."}

    simple1

    {"project":"simple1","denotations":[{"id":"T22722","span":{"begin":77,"end":87},"obj":"Protein"}],"text":"The murine 5′ flanking region from −4480 to +92 was inserted upstream of the luciferase reporter gene and 5′ deletions were generated using restriction enzyme sites or with specific oligonucleotide PCR primers."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T22971","span":{"begin":77,"end":87},"obj":"Protein"}],"text":"The murine 5′ flanking region from −4480 to +92 was inserted upstream of the luciferase reporter gene and 5′ deletions were generated using restriction enzyme sites or with specific oligonucleotide PCR primers."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T23008","span":{"begin":77,"end":87},"obj":"Protein"}],"text":"The murine 5′ flanking region from −4480 to +92 was inserted upstream of the luciferase reporter gene and 5′ deletions were generated using restriction enzyme sites or with specific oligonucleotide PCR primers."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T22991","span":{"begin":77,"end":87},"obj":"Protein"}],"text":"The murine 5′ flanking region from −4480 to +92 was inserted upstream of the luciferase reporter gene and 5′ deletions were generated using restriction enzyme sites or with specific oligonucleotide PCR primers."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T23088","span":{"begin":73,"end":101},"obj":"Protein"},{"id":"T23084","span":{"begin":140,"end":164},"obj":"Entity"},{"id":"T23082","span":{"begin":198,"end":201},"obj":"Protein"},{"id":"T23075","span":{"begin":173,"end":209},"obj":"Entity"},{"id":"T23073","span":{"begin":77,"end":87},"obj":"Protein"},{"id":"T23069","span":{"begin":140,"end":158},"obj":"Protein"}],"text":"The murine 5′ flanking region from −4480 to +92 was inserted upstream of the luciferase reporter gene and 5′ deletions were generated using restriction enzyme sites or with specific oligonucleotide PCR primers."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T23020","span":{"begin":77,"end":87},"obj":"Protein"}],"text":"The murine 5′ flanking region from −4480 to +92 was inserted upstream of the luciferase reporter gene and 5′ deletions were generated using restriction enzyme sites or with specific oligonucleotide PCR primers."}

    testone

    {"project":"testone","denotations":[{"id":"T22668","span":{"begin":77,"end":87},"obj":"Protein"}],"text":"The murine 5′ flanking region from −4480 to +92 was inserted upstream of the luciferase reporter gene and 5′ deletions were generated using restriction enzyme sites or with specific oligonucleotide PCR primers."}

    test3

    {"project":"test3","denotations":[{"id":"T22684","span":{"begin":77,"end":87},"obj":"Protein"},{"id":"T22676","span":{"begin":77,"end":87},"obj":"Protein"}],"text":"The murine 5′ flanking region from −4480 to +92 was inserted upstream of the luciferase reporter gene and 5′ deletions were generated using restriction enzyme sites or with specific oligonucleotide PCR primers."}