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PMC:3589482 / 20503-21920 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T23359 1415-1416 . denotes .
T23358 1411-1415 NN denotes site
T23357 1400-1410 NN denotes initiation
T23356 1386-1399 NN denotes transcription
T23355 1384-1385 SYM denotes =
T23354 1380-1383 FW denotes tis
T23353 1378-1379 , denotes ,
T23352 1372-1378 NN denotes repeat
T23351 1356-1371 NN denotes tetranucleotide
T23350 1351-1355 NNP denotes TATG
T23349 1349-1350 SYM denotes =
T23348 1347-1348 VBP denotes n
T23347 1346-1347 -RRB- denotes )
T23346 1342-1346 NNP denotes TATG
T23345 1341-1342 -LRB- denotes (
T23344 1339-1340 , denotes ,
T23343 1338-1339 -RRB- denotes )
T23342 1335-1338 NNP denotes LTR
T23341 1334-1335 -LRB- denotes (
T23340 1327-1333 NN denotes repeat
T23339 1318-1326 NN denotes terminal
T23338 1313-1317 JJ denotes long
T23337 1307-1312 CD denotes MLT1L
T23336 1305-1306 SYM denotes =
T23335 1299-1304 NNP denotes MLT1L
T23334 1297-1298 , denotes ,
T23333 1293-1297 NNP denotes SINE
T23332 1289-1292 NNP denotes MIR
T23331 1287-1288 SYM denotes =
T23330 1283-1286 NNP denotes MIR
T23329 1281-1282 , denotes ,
T23328 1277-1281 NNP denotes LINE
T23327 1274-1276 CD denotes L2
T23326 1271-1272 SYM denotes =
T23325 1268-1270 NNP denotes L2
T23324 1266-1267 , denotes ,
T23323 1265-1266 -RRB- denotes )
T23322 1261-1265 NNP denotes LINE
T23321 1260-1261 -LRB- denotes (
T23320 1252-1259 NN denotes element
T23319 1244-1251 JJ denotes nuclear
T23318 1231-1243 VBN denotes interspersed
T23317 1226-1230 JJ denotes long
T23316 1223-1225 CD denotes L1
T23315 1220-1221 SYM denotes =
T23314 1217-1219 NNP denotes L1
T23313 1215-1216 , denotes ,
T23312 1214-1215 -RRB- denotes )
T23311 1210-1214 NNP denotes SINE
T23310 1209-1210 -LRB- denotes (
T23309 1202-1208 NN denotes repeat
T23308 1194-1201 JJ denotes nuclear
T23307 1181-1193 VBN denotes interspersed
T23306 1175-1180 JJ denotes short
T23305 1171-1174 CD denotes ID4
T23304 1168-1169 SYM denotes =
T23303 1164-1167 NNP denotes ID4
T23302 1162-1163 , denotes ,
T23301 1156-1162 NN denotes repeat
T23300 1152-1155 NNP denotes Alu
T23299 1150-1151 SYM denotes =
T23298 1146-1149 NNP denotes Alu
T23297 1144-1145 . denotes .
T23296 1137-1144 NNS denotes regions
T23295 1128-1136 NN denotes flanking
T23294 1126-1127 NN denotes ′
T23293 1125-1126 CD denotes 5
T23292 1120-1124 DT denotes both
T23291 1117-1119 IN denotes in
T23290 1108-1116 NNS denotes elements
T23289 1099-1107 NN denotes sequence
T23288 1088-1098 JJ denotes repetitive
T23287 1085-1087 IN denotes by
T23286 1073-1084 VBN denotes interrupted
T23285 1069-1072 VBP denotes are
T23284 1061-1068 NNS denotes regions
T23283 1050-1060 JJ denotes Homologous
T23282 1048-1049 . denotes .
T23281 1043-1048 NNS denotes boxes
T23280 1035-1042 VBN denotes colored
T23279 1030-1034 JJ denotes same
T23278 1026-1029 DT denotes the
T23277 1023-1025 IN denotes by
T23276 1013-1022 VBN denotes indicated
T23275 1004-1012 NN denotes identity
T23274 995-1003 NN denotes sequence
T23273 984-994 NN denotes nucleotide
T23272 981-983 IN denotes of
T23271 973-980 NNS denotes regions
T23270 968-972 IN denotes with
T23269 960-967 NNS denotes regions
T23268 951-959 NN denotes flanking
T23267 949-950 NN denotes ′
T23266 948-949 CD denotes 5
T23265 939-947 NN denotes SerpinB2
T23264 932-938 JJ denotes murine
T23263 928-931 CC denotes and
T23262 922-927 JJ denotes human
T23261 918-921 DT denotes the
T23260 915-917 IN denotes of
T23259 900-914 NN denotes representation
T23258 890-899 JJ denotes Schematic
T23257 888-889 . denotes .
T23256 881-888 NNS denotes regions
T23255 872-880 NN denotes flanking
T23247 831-838 IN denotes between
T23246 818-830 NN denotes conservation
T23245 809-817 NN denotes sequence
T23244 805-808 NNP denotes DNA
T23243 803-804 -RRB- denotes )
T23242 802-803 NNP denotes C
T23241 801-802 -LRB- denotes (
T23240 799-800 . denotes .
T23239 788-799 NNS denotes experiments
T23238 776-787 JJ denotes independent
T23237 771-775 CD denotes four
T23236 768-770 IN denotes of
T23235 764-767 NNP denotes SEM
T23234 760-763 CC denotes and
T23233 755-759 NN denotes mean
T23232 751-754 DT denotes the
T23231 741-750 VBP denotes represent
T23230 733-740 NNS denotes results
T23229 729-732 DT denotes The
T23228 727-728 . denotes .
T23227 718-727 NN denotes treatment
T23226 708-717 VBG denotes following
T23225 699-707 NN denotes activity
T23224 694-698 NN denotes gene
T23223 685-693 NN denotes reporter
T23222 674-684 NN denotes luciferase
T23221 665-673 JJ denotes relative
T23220 661-664 DT denotes the
T23219 658-660 VBZ denotes is
T23218 652-657 VBN denotes Shown
T23217 650-651 . denotes .
T23216 647-650 NNS denotes hrs
T23215 644-646 CD denotes 16
T23214 640-643 IN denotes for
T23213 636-639 NNP denotes PMA
T23212 630-635 JJ denotes ng/ml
T23211 627-629 CD denotes 40
T23210 624-626 CC denotes or
T23209 620-623 NNP denotes LPS
T23208 614-619 JJ denotes ng/ml
T23207 610-613 CD denotes 100
T23206 605-609 IN denotes with
T23205 597-604 VBN denotes treated
T23204 594-596 CC denotes or
T23203 584-593 JJ denotes untreated
T23202 579-583 VBN denotes left
T23201 572-578 RB denotes either
T23200 567-571 VBD denotes were
T23199 561-566 NNS denotes Cells
T23198 559-560 . denotes .
T23197 551-559 NNS denotes plasmids
T23196 543-550 NN denotes control
T23195 539-542 CC denotes and
T23194 528-538 NNS denotes constructs
T23193 519-527 NN denotes reporter
T23192 499-518 JJ denotes promoter-luciferase
T23191 490-498 NNP denotes SerpinB2
T23190 483-489 NN denotes murine
T23189 473-482 VBN denotes indicated
T23188 469-472 DT denotes the
T23187 464-468 IN denotes with
T23186 452-463 VBN denotes transfected
T23185 440-451 RB denotes transiently
T23184 435-439 VBD denotes were
T23183 423-434 NNS denotes macrophages
T23182 417-422 CD denotes 264.7
T23181 413-416 NNP denotes RAW
T23180 411-412 -RRB- denotes )
T23179 410-411 NNP denotes B
T23178 409-410 -LRB- denotes (
T23177 407-408 . denotes .
T23176 399-407 NN denotes sequence
T23175 390-398 NN denotes flanking
T23174 388-389 NN denotes ′
T23173 387-388 CD denotes 5
T23172 378-386 CD denotes SerpinB2
T23171 371-377 NN denotes murine
T23170 368-370 IN denotes of
T23169 357-367 NN denotes nucleotide
T23168 355-356 NN denotes ′
T23167 354-355 CD denotes 5
T23166 349-353 RBS denotes most
T23165 345-348 DT denotes the
T23164 336-344 VBP denotes indicate
T23163 330-335 NNS denotes names
T23162 320-329 VB denotes Construct
T23161 318-319 . denotes .
T23160 311-318 NNS denotes primers
T23159 307-310 NNP denotes PCR
T23158 291-306 NN denotes oligonucleotide
T23157 282-290 JJ denotes specific
T23156 277-281 IN denotes with
T23155 274-276 CC denotes or
T23154 268-273 NNS denotes sites
T23153 261-267 NN denotes enzyme
T23152 249-260 NN denotes restriction
T23151 243-248 VBG denotes using
T23150 233-242 VBN denotes generated
T23149 228-232 VBD denotes were
T23148 218-227 NNS denotes deletions
T23147 216-217 NN denotes ′
T23146 215-216 CD denotes 5
T23145 211-214 CC denotes and
T23144 206-210 NN denotes gene
T23143 197-205 NN denotes reporter
T23142 186-196 NN denotes luciferase
T23141 182-185 DT denotes the
T23140 179-181 IN denotes of
T23139 170-178 RB denotes upstream
T23138 161-169 VBN denotes inserted
T23137 157-160 VBD denotes was
T23136 153-156 CD denotes +92
T23135 150-152 TO denotes to
T23134 145-149 CD denotes 4480
T23133 144-145 CD denotes −
T23132 139-143 IN denotes from
T23131 132-138 NN denotes region
T23130 123-131 NN denotes flanking
T23129 121-122 NN denotes ′
T23128 120-121 CD denotes 5
T23127 113-119 NN denotes murine
T23126 109-112 DT denotes The
T23125 107-108 . denotes .
T23124 97-107 NNS denotes constructs
T23123 88-96 NN denotes reporter
T23122 77-87 NN denotes luciferase
T23121 68-76 NN denotes deletion
T23120 66-67 NN denotes ′
T23119 65-66 CD denotes 5
T23118 61-64 CC denotes and
T23117 52-60 NN denotes promoter
T23116 43-51 NNP denotes SerpinB2
T23115 36-42 NN denotes murine
T23114 32-35 DT denotes the
T23113 29-31 IN denotes of
T23112 14-28 NN denotes representation
T23111 4-13 JJ denotes Schematic
T23110 2-3 -RRB- denotes )
T23109 1-2 NN denotes A
T23108 0-1 -LRB- denotes (
T23254 870-871 NN denotes ′
T23253 869-870 CD denotes 5
T23252 860-868 NN denotes SerpinB2
T23251 853-859 JJ denotes murine
T23250 849-852 CC denotes and
T23249 843-848 JJ denotes human
T23248 839-842 DT denotes the
R16607 T23108 T23109 punct (,A
R16608 T23109 T23112 nmod A,representation
R16609 T23110 T23109 punct ),A
R16610 T23111 T23112 amod Schematic,representation
R16611 T23112 T23112 ROOT representation,representation
R16612 T23113 T23112 prep of,representation
R16613 T23114 T23117 det the,promoter
R16614 T23115 T23117 compound murine,promoter
R16615 T23116 T23117 compound SerpinB2,promoter
R16616 T23117 T23113 pobj promoter,of
R16617 T23118 T23112 cc and,representation
R16618 T23119 T23120 nummod 5,′
R16619 T23120 T23121 npadvmod ′,deletion
R16620 T23121 T23124 nmod deletion,constructs
R16621 T23122 T23124 compound luciferase,constructs
R16622 T23123 T23124 compound reporter,constructs
R16623 T23124 T23112 conj constructs,representation
R16624 T23125 T23112 punct .,representation
R16625 T23126 T23131 det The,region
R16626 T23127 T23131 amod murine,region
R16627 T23128 T23129 nummod 5,′
R16628 T23129 T23131 compound ′,region
R16629 T23130 T23131 compound flanking,region
R16630 T23131 T23138 nsubjpass region,inserted
R16631 T23132 T23131 prep from,region
R16632 T23133 T23132 pobj −,from
R16633 T23134 T23138 nsubjpass 4480,inserted
R16634 T23135 T23138 prep to,inserted
R16635 T23136 T23135 pobj +92,to
R16636 T23137 T23138 auxpass was,inserted
R16637 T23138 T23138 ROOT inserted,inserted
R16638 T23139 T23138 advmod upstream,inserted
R16639 T23140 T23139 prep of,upstream
R16640 T23141 T23144 det the,gene
R16641 T23142 T23144 compound luciferase,gene
R16642 T23143 T23144 compound reporter,gene
R16643 T23144 T23140 pobj gene,of
R16644 T23145 T23139 cc and,upstream
R16645 T23146 T23148 nummod 5,deletions
R16646 T23147 T23148 compound ′,deletions
R16647 T23148 T23150 nsubjpass deletions,generated
R16648 T23149 T23150 auxpass were,generated
R16649 T23150 T23138 conj generated,inserted
R16650 T23151 T23150 advcl using,generated
R16651 T23152 T23154 compound restriction,sites
R16652 T23153 T23154 compound enzyme,sites
R16653 T23154 T23151 dobj sites,using
R16654 T23155 T23151 cc or,using
R16655 T23156 T23150 prep with,generated
R16656 T23157 T23160 amod specific,primers
R16657 T23158 T23160 amod oligonucleotide,primers
R16658 T23159 T23160 compound PCR,primers
R16659 T23160 T23156 pobj primers,with
R16660 T23161 T23150 punct .,generated
R16661 T23162 T23163 amod Construct,names
R16662 T23163 T23164 nsubj names,indicate
R16663 T23164 T23164 ROOT indicate,indicate
R16664 T23165 T23169 det the,nucleotide
R16665 T23166 T23167 advmod most,5
R16666 T23167 T23168 nummod 5,′
R16667 T23168 T23169 compound ′,nucleotide
R16668 T23169 T23164 dobj nucleotide,indicate
R16669 T23170 T23169 prep of,nucleotide
R16670 T23171 T23176 nmod murine,sequence
R16671 T23172 T23171 nummod SerpinB2,murine
R16672 T23173 T23174 nummod 5,′
R16673 T23174 T23176 compound ′,sequence
R16674 T23175 T23176 compound flanking,sequence
R16675 T23176 T23170 pobj sequence,of
R16676 T23177 T23164 punct .,indicate
R16677 T23178 T23181 punct (,RAW
R16678 T23179 T23181 nmod B,RAW
R16679 T23180 T23181 punct ),RAW
R16680 T23181 T23186 intj RAW,transfected
R16681 T23182 T23181 nummod 264.7,RAW
R16682 T23183 T23186 nsubjpass macrophages,transfected
R16683 T23184 T23186 auxpass were,transfected
R16684 T23185 T23186 advmod transiently,transfected
R16685 T23186 T23186 ROOT transfected,transfected
R16686 T23187 T23186 prep with,transfected
R16687 T23188 T23194 det the,constructs
R16688 T23189 T23190 amod indicated,murine
R16689 T23190 T23194 compound murine,constructs
R16690 T23191 T23193 nmod SerpinB2,reporter
R16691 T23192 T23193 amod promoter-luciferase,reporter
R16692 T23193 T23194 compound reporter,constructs
R16693 T23194 T23187 pobj constructs,with
R16694 T23195 T23194 cc and,constructs
R16695 T23196 T23197 compound control,plasmids
R16696 T23197 T23194 conj plasmids,constructs
R16697 T23198 T23186 punct .,transfected
R16698 T23199 T23202 nsubjpass Cells,left
R16699 T23200 T23202 auxpass were,left
R16700 T23201 T23202 preconj either,left
R16701 T23202 T23202 ROOT left,left
R16702 T23203 T23202 oprd untreated,left
R16703 T23204 T23202 cc or,left
R16704 T23205 T23202 conj treated,left
R16705 T23206 T23205 prep with,treated
R16706 T23207 T23209 nummod 100,LPS
R16707 T23208 T23209 compound ng/ml,LPS
R16708 T23209 T23206 pobj LPS,with
R16709 T23210 T23209 cc or,LPS
R16710 T23211 T23213 nummod 40,PMA
R16711 T23212 T23213 compound ng/ml,PMA
R16712 T23213 T23209 conj PMA,LPS
R16713 T23214 T23205 prep for,treated
R16714 T23215 T23216 nummod 16,hrs
R16715 T23216 T23214 pobj hrs,for
R16716 T23217 T23202 punct .,left
R16717 T23218 T23218 ROOT Shown,Shown
R16718 T23219 T23218 auxpass is,Shown
R16719 T23220 T23225 det the,activity
R16720 T23221 T23225 amod relative,activity
R16721 T23222 T23225 compound luciferase,activity
R16722 T23223 T23225 compound reporter,activity
R16723 T23224 T23225 compound gene,activity
R16724 T23225 T23218 nsubjpass activity,Shown
R16725 T23226 T23225 prep following,activity
R16726 T23227 T23226 dobj treatment,following
R16727 T23228 T23218 punct .,Shown
R16728 T23229 T23230 det The,results
R16729 T23230 T23231 nsubj results,represent
R16730 T23231 T23231 ROOT represent,represent
R16731 T23232 T23233 det the,mean
R16732 T23233 T23231 dobj mean,represent
R16733 T23234 T23233 cc and,mean
R16734 T23235 T23233 conj SEM,mean
R16735 T23236 T23235 prep of,SEM
R16736 T23237 T23239 nummod four,experiments
R16737 T23238 T23239 amod independent,experiments
R16738 T23239 T23236 pobj experiments,of
R16739 T23240 T23231 punct .,represent
R16740 T23241 T23246 punct (,conservation
R16741 T23242 T23246 nmod C,conservation
R16742 T23243 T23242 punct ),C
R16743 T23244 T23245 compound DNA,sequence
R16744 T23245 T23246 compound sequence,conservation
R16745 T23246 T23246 ROOT conservation,conservation
R16746 T23247 T23246 prep between,conservation
R16747 T23248 T23256 det the,regions
R16748 T23249 T23252 amod human,SerpinB2
R16749 T23250 T23249 cc and,human
R16750 T23251 T23249 conj murine,human
R16751 T23252 T23256 nmod SerpinB2,regions
R16752 T23253 T23252 nummod 5,SerpinB2
R16753 T23254 T23256 compound ′,regions
R16754 T23255 T23256 compound flanking,regions
R16755 T23256 T23247 pobj regions,between
R16756 T23257 T23246 punct .,conservation
R16757 T23258 T23259 amod Schematic,representation
R16758 T23259 T23259 ROOT representation,representation
R16759 T23260 T23259 prep of,representation
R16760 T23261 T23269 det the,regions
R16761 T23262 T23265 amod human,SerpinB2
R16762 T23263 T23262 cc and,human
R16763 T23264 T23262 conj murine,human
R16764 T23265 T23269 nmod SerpinB2,regions
R16765 T23266 T23267 nummod 5,′
R16766 T23267 T23269 compound ′,regions
R16767 T23268 T23269 compound flanking,regions
R16768 T23269 T23260 pobj regions,of
R16769 T23270 T23269 prep with,regions
R16770 T23271 T23270 pobj regions,with
R16771 T23272 T23271 prep of,regions
R16772 T23273 T23275 amod nucleotide,identity
R16773 T23274 T23275 compound sequence,identity
R16774 T23275 T23272 pobj identity,of
R16775 T23276 T23259 acl indicated,representation
R16776 T23277 T23276 agent by,indicated
R16777 T23278 T23281 det the,boxes
R16778 T23279 T23281 amod same,boxes
R16779 T23280 T23281 amod colored,boxes
R16780 T23281 T23277 pobj boxes,by
R16781 T23282 T23259 punct .,representation
R16782 T23283 T23284 amod Homologous,regions
R16783 T23284 T23286 nsubjpass regions,interrupted
R16784 T23285 T23286 auxpass are,interrupted
R16785 T23286 T23286 ROOT interrupted,interrupted
R16786 T23287 T23286 agent by,interrupted
R16787 T23288 T23290 amod repetitive,elements
R16788 T23289 T23290 compound sequence,elements
R16789 T23290 T23287 pobj elements,by
R16790 T23291 T23290 prep in,elements
R16791 T23292 T23296 det both,regions
R16792 T23293 T23294 nummod 5,′
R16793 T23294 T23296 compound ′,regions
R16794 T23295 T23296 compound flanking,regions
R16795 T23296 T23291 pobj regions,in
R16796 T23297 T23286 punct .,interrupted
R16797 T23298 T23301 compound Alu,repeat
R16798 T23299 T23300 punct =,Alu
R16799 T23300 T23301 compound Alu,repeat
R16800 T23301 T23301 ROOT repeat,repeat
R16801 T23302 T23301 punct ",",repeat
R16802 T23303 T23305 quantmod ID4,ID4
R16803 T23304 T23305 punct =,ID4
R16804 T23305 T23309 nummod ID4,repeat
R16805 T23306 T23307 advmod short,interspersed
R16806 T23307 T23309 amod interspersed,repeat
R16807 T23308 T23309 amod nuclear,repeat
R16808 T23309 T23301 appos repeat,repeat
R16809 T23310 T23309 punct (,repeat
R16810 T23311 T23309 appos SINE,repeat
R16811 T23312 T23309 punct ),repeat
R16812 T23313 T23309 punct ",",repeat
R16813 T23314 T23320 nmod L1,element
R16814 T23315 T23316 punct =,L1
R16815 T23316 T23320 nummod L1,element
R16816 T23317 T23318 advmod long,interspersed
R16817 T23318 T23320 amod interspersed,element
R16818 T23319 T23320 amod nuclear,element
R16819 T23320 T23301 appos element,repeat
R16820 T23321 T23322 punct (,LINE
R16821 T23322 T23320 appos LINE,element
R16822 T23323 T23322 punct ),LINE
R16823 T23324 T23320 punct ",",element
R16824 T23325 T23328 compound L2,LINE
R16825 T23326 T23327 punct =,L2
R16826 T23327 T23328 compound L2,LINE
R16827 T23328 T23320 appos LINE,element
R16828 T23329 T23328 punct ",",LINE
R16829 T23330 T23333 compound MIR,SINE
R16830 T23331 T23330 punct =,MIR
R16831 T23332 T23333 compound MIR,SINE
R16832 T23333 T23328 appos SINE,LINE
R16833 T23334 T23333 punct ",",SINE
R16834 T23335 T23340 nmod MLT1L,repeat
R16835 T23336 T23337 punct =,MLT1L
R16836 T23337 T23340 nummod MLT1L,repeat
R16837 T23338 T23339 amod long,terminal
R16838 T23339 T23340 compound terminal,repeat
R16839 T23340 T23333 appos repeat,SINE
R16840 T23341 T23342 punct (,LTR
R16841 T23342 T23340 appos LTR,repeat
R16842 T23343 T23342 punct ),LTR
R16843 T23344 T23333 punct ",",SINE
R16844 T23345 T23346 punct (,TATG
R16845 T23346 T23333 appos TATG,SINE
R16846 T23347 T23333 punct ),SINE
R16847 T23348 T23352 nmod n,repeat
R16848 T23349 T23352 punct =,repeat
R16849 T23350 T23352 compound TATG,repeat
R16850 T23351 T23352 compound tetranucleotide,repeat
R16851 T23352 T23358 nmod repeat,site
R16852 T23353 T23352 punct ",",repeat
R16853 T23354 T23358 compound tis,site
R16854 T23355 T23356 punct =,transcription
R16855 T23356 T23357 compound transcription,initiation
R16856 T23357 T23358 compound initiation,site
R16857 T23358 T23301 appos site,repeat
R16858 T23359 T23301 punct .,repeat

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T22960 1411-1415 NN denotes site
T22959 1400-1410 NN denotes initiation
T22958 1380-1399 NN denotes tis = transcription
T22957 1378-1379 -COMMA- denotes ,
T22956 1372-1378 NN denotes repeat
T22955 1356-1371 NN denotes tetranucleotide
T22954 1347-1355 NN denotes n = TATG
T22953 1346-1347 -RRB- denotes )
T22952 1342-1346 NN denotes TATG
T22951 1341-1342 -LRB- denotes (
T22950 1339-1340 -COMMA- denotes ,
T22949 1338-1339 -RRB- denotes )
T22948 1335-1338 NN denotes LTR
T22947 1334-1335 -LRB- denotes (
T22946 1327-1333 NN denotes repeat
T22945 1318-1326 JJ denotes terminal
T22944 1313-1317 JJ denotes long
T22943 1299-1312 NN denotes MLT1L = MLT1L
T22942 1297-1298 -COMMA- denotes ,
T22941 1293-1297 NNP denotes SINE
T22940 1283-1292 NNP denotes MIR = MIR
T22939 1281-1282 -COMMA- denotes ,
T22938 1277-1281 NNP denotes LINE
T22937 1274-1276 NNP denotes L2
T22936 1268-1273 NN denotes L2 = 
T22935 1266-1267 -COMMA- denotes ,
T22934 1265-1266 -RRB- denotes )
T22933 1261-1265 NN denotes LINE
T22932 1260-1261 -LRB- denotes (
T22931 1252-1259 NN denotes element
T22930 1244-1251 JJ denotes nuclear
T22929 1231-1243 JJ denotes interspersed
T22928 1226-1230 JJ denotes long
T22927 1223-1225 NN denotes L1
T22926 1217-1222 NN denotes L1 = 
T22925 1215-1216 -COMMA- denotes ,
T22924 1214-1215 -RRB- denotes )
T22923 1210-1214 NN denotes SINE
T22922 1209-1210 -LRB- denotes (
T22921 1202-1208 NN denotes repeat
T22920 1194-1201 JJ denotes nuclear
T22919 1181-1193 JJ denotes interspersed
T22918 1175-1180 JJ denotes short
T22917 1171-1174 NN denotes ID4
T22916 1164-1170 NN denotes ID4 = 
T22915 1162-1163 -COMMA- denotes ,
T22914 1156-1162 NN denotes repeat
T22913 1146-1155 NN denotes Alu = Alu
T22912 1137-1144 NN denotes regions
T22911 1128-1136 NN denotes flanking
T22910 1125-1127 CD denotes 5′
T22909 1120-1124 CC denotes both
T22908 1117-1119 IN denotes in
T22907 1108-1116 NN denotes elements
T22906 1099-1107 NN denotes sequence
T22905 1088-1098 JJ denotes repetitive
T22904 1085-1087 IN denotes by
T22903 1073-1084 VB denotes interrupted
T22902 1069-1072 VB denotes are
T22901 1061-1068 NN denotes regions
T22900 1050-1060 JJ denotes Homologous
T22899 1043-1048 NN denotes boxes
T22898 1035-1042 VB denotes colored
T22897 1030-1034 JJ denotes same
T22896 1026-1029 DT denotes the
T22895 1023-1025 IN denotes by
T22894 1013-1022 VB denotes indicated
T22893 1004-1012 NN denotes identity
T22892 995-1003 NN denotes sequence
T22891 984-994 NN denotes nucleotide
T22890 981-983 IN denotes of
T22889 973-980 NN denotes regions
T22888 968-972 IN denotes with
T22887 960-967 NN denotes regions
T22886 951-959 NN denotes flanking
T22885 948-950 NN denotes 5′
T22884 939-947 NN denotes SerpinB2
T22883 932-938 JJ denotes murine
T22882 928-931 CC denotes and
T22881 922-927 JJ denotes human
T22880 918-921 DT denotes the
T22879 915-917 IN denotes of
T22878 900-914 NN denotes representation
T22877 890-899 JJ denotes Schematic
T22876 881-888 NN denotes regions
T22875 872-880 NN denotes flanking
T22874 869-871 NN denotes 5′
T22873 860-868 NN denotes SerpinB2
T22872 853-859 JJ denotes murine
T22871 849-852 CC denotes and
T22870 843-848 JJ denotes human
T22869 839-842 DT denotes the
T22868 831-838 IN denotes between
T22867 818-830 NN denotes conservation
T22866 809-817 NN denotes sequence
T22865 805-808 NN denotes DNA
T22864 803-804 -RRB- denotes )
T22863 802-803 NN denotes C
T22862 801-802 -LRB- denotes (
T22861 788-800 NN denotes experiments.
T22860 776-787 JJ denotes independent
T22859 771-775 CD denotes four
T22858 768-770 IN denotes of
T22857 764-767 NN denotes SEM
T22856 760-763 CC denotes and
T22855 755-759 NN denotes mean
T22854 751-754 DT denotes the
T22853 741-750 VB denotes represent
T22852 733-740 NN denotes results
T22851 729-732 DT denotes The
T22850 718-727 NN denotes treatment
T22849 708-717 VB denotes following
T22848 699-707 NN denotes activity
T22847 694-698 NN denotes gene
T22846 685-693 NN denotes reporter
T22845 674-684 NN denotes luciferase
T22844 665-673 JJ denotes relative
T22843 661-664 DT denotes the
T22842 658-660 VB denotes is
T22836 630-635 NN denotes ng/ml
T22835 627-629 CD denotes 40
T22834 624-626 CC denotes or
T22833 620-623 NN denotes LPS
T22832 614-619 NN denotes ng/ml
T22831 610-613 CD denotes 100
T22830 605-609 IN denotes with
T22829 597-604 VB denotes treated
T22828 594-596 CC denotes or
T22827 584-593 JJ denotes untreated
T22826 579-583 JJ denotes left
T22825 572-578 CC denotes either
T22824 567-571 VB denotes were
T22823 561-566 NN denotes Cells
T22822 551-559 NN denotes plasmids
T22821 543-550 NN denotes control
T22820 539-542 CC denotes and
T22819 528-538 NN denotes constructs
T22818 519-527 NN denotes reporter
T22817 499-518 NN denotes promoter-luciferase
T22816 490-498 NN denotes SerpinB2
T22815 483-489 JJ denotes murine
T22814 473-482 VB denotes indicated
T22813 469-472 DT denotes the
T22812 464-468 IN denotes with
T22811 452-463 VB denotes transfected
T22810 440-451 RB denotes transiently
T22809 435-439 VB denotes were
T22808 423-434 NN denotes macrophages
T22807 417-422 CD denotes 264.7
T22806 413-416 NN denotes RAW
T22805 411-412 -RRB- denotes )
T22804 410-411 NN denotes B
T22803 409-410 -LRB- denotes (
T22802 399-408 NN denotes sequence.
T22801 390-398 NN denotes flanking
T22800 387-389 NN denotes 5′
T22799 378-386 NN denotes SerpinB2
T22798 371-377 JJ denotes murine
T22797 368-370 IN denotes of
T22796 357-367 NN denotes nucleotide
T22795 354-356 JJ denotes 5′
T22794 349-353 RB denotes most
T22793 345-348 DT denotes the
T22792 336-344 VB denotes indicate
T22791 330-335 NN denotes names
T22790 320-329 NN denotes Construct
T22789 311-318 NN denotes primers
T22788 307-310 NN denotes PCR
T22787 291-306 NN denotes oligonucleotide
T22786 282-290 JJ denotes specific
T22785 277-281 IN denotes with
T22784 274-276 CC denotes or
T22783 268-273 NN denotes sites
T22782 261-267 NN denotes enzyme
T22781 249-260 NN denotes restriction
T22780 243-248 VB denotes using
T22779 233-242 VB denotes generated
T22778 228-232 VB denotes were
T22777 218-227 NN denotes deletions
T22776 215-217 NN denotes 5′
T22775 211-214 CC denotes and
T22774 206-210 NN denotes gene
T22773 197-205 NN denotes reporter
T22772 186-196 NN denotes luciferase
T22771 182-185 DT denotes the
T22770 179-181 IN denotes of
T22769 170-178 RB denotes upstream
T22768 161-169 VB denotes inserted
T22767 157-160 VB denotes was
T22766 153-156 CD denotes +92
T22765 150-152 TO denotes to
T22764 144-149 CD denotes −4480
T22763 139-143 IN denotes from
T22762 132-138 NN denotes region
T22761 123-131 NN denotes flanking
T22760 120-122 NN denotes 5′
T22759 113-119 JJ denotes murine
T22758 109-112 DT denotes The
T22757 97-107 NN denotes constructs
T22756 88-96 NN denotes reporter
T22755 77-87 NN denotes luciferase
T22754 68-76 NN denotes deletion
T22753 65-67 NN denotes 5′
T22752 61-64 CC denotes and
T22751 52-60 NN denotes promoter
T22750 43-51 NN denotes SerpinB2
T22749 36-42 JJ denotes murine
T22748 32-35 DT denotes the
T22747 29-31 IN denotes of
T22746 14-28 NN denotes representation
T22745 4-13 JJ denotes Schematic
T22744 2-3 -RRB- denotes )
T22743 1-2 NN denotes A
T22742 0-1 -LRB- denotes (
T22841 652-657 NNP denotes Shown
T22840 647-650 NN denotes hrs
T22839 644-646 CD denotes 16
T22838 640-643 IN denotes for
T22837 636-639 NN denotes PMA
R16362 T22743 T22742 arg2Of A,(
R16363 T22744 T22742 arg3Of ),(
R16364 T22746 T22745 arg1Of representation,Schematic
R16365 T22746 T22747 arg1Of representation,of
R16366 T22746 T22752 arg1Of representation,and
R16367 T22751 T22747 arg2Of promoter,of
R16368 T22751 T22748 arg1Of promoter,the
R16369 T22751 T22749 arg1Of promoter,murine
R16370 T22751 T22750 arg1Of promoter,SerpinB2
R16371 T22752 T22742 arg1Of and,(
R16372 T22757 T22752 arg2Of constructs,and
R16373 T22757 T22753 arg1Of constructs,5′
R16374 T22757 T22754 arg1Of constructs,deletion
R16375 T22757 T22755 arg1Of constructs,luciferase
R16376 T22757 T22756 arg1Of constructs,reporter
R16377 T22762 T22758 arg1Of region,The
R16378 T22762 T22759 arg1Of region,murine
R16379 T22762 T22760 arg1Of region,5′
R16380 T22762 T22761 arg1Of region,flanking
R16381 T22762 T22763 arg1Of region,from
R16382 T22762 T22767 arg1Of region,was
R16383 T22762 T22768 arg2Of region,inserted
R16384 T22764 T22763 arg2Of −4480,from
R16385 T22764 T22765 arg1Of −4480,to
R16386 T22766 T22765 arg2Of +92,to
R16387 T22768 T22767 arg2Of inserted,was
R16388 T22768 T22769 arg1Of inserted,upstream
R16389 T22768 T22775 arg1Of inserted,and
R16390 T22769 T22770 arg1Of upstream,of
R16391 T22774 T22770 arg2Of gene,of
R16392 T22774 T22771 arg1Of gene,the
R16393 T22774 T22772 arg1Of gene,luciferase
R16394 T22774 T22773 arg1Of gene,reporter
R16395 T22777 T22776 arg1Of deletions,5′
R16396 T22777 T22778 arg1Of deletions,were
R16397 T22777 T22779 arg2Of deletions,generated
R16398 T22779 T22775 arg2Of generated,and
R16399 T22779 T22778 arg2Of generated,were
R16400 T22780 T22779 arg3Of using,generated
R16401 T22780 T22784 arg1Of using,or
R16402 T22780 T22785 arg1Of using,with
R16403 T22783 T22780 arg2Of sites,using
R16404 T22783 T22781 arg1Of sites,restriction
R16405 T22783 T22782 arg1Of sites,enzyme
R16406 T22789 T22785 arg2Of primers,with
R16407 T22789 T22786 arg1Of primers,specific
R16408 T22789 T22787 arg1Of primers,oligonucleotide
R16409 T22789 T22788 arg1Of primers,PCR
R16410 T22791 T22790 arg1Of names,Construct
R16411 T22791 T22792 arg1Of names,indicate
R16412 T22795 T22794 arg1Of 5′,most
R16413 T22796 T22793 arg1Of nucleotide,the
R16414 T22796 T22795 arg1Of nucleotide,5′
R16415 T22796 T22797 arg1Of nucleotide,of
R16416 T22796 T22809 arg1Of nucleotide,were
R16417 T22796 T22811 arg2Of nucleotide,transfected
R16418 T22804 T22803 arg2Of B,(
R16419 T22805 T22803 arg3Of ),(
R16420 T22808 T22797 arg2Of macrophages,of
R16421 T22808 T22798 arg1Of macrophages,murine
R16422 T22808 T22799 arg1Of macrophages,SerpinB2
R16423 T22808 T22800 arg1Of macrophages,5′
R16424 T22808 T22801 arg1Of macrophages,flanking
R16425 T22808 T22802 arg1Of macrophages,sequence.
R16426 T22808 T22803 arg1Of macrophages,(
R16427 T22808 T22806 arg1Of macrophages,RAW
R16428 T22808 T22807 arg1Of macrophages,264.7
R16429 T22811 T22792 arg2Of transfected,indicate
R16430 T22811 T22809 arg2Of transfected,were
R16431 T22811 T22810 arg1Of transfected,transiently
R16432 T22811 T22812 arg1Of transfected,with
R16433 T22819 T22814 arg2Of constructs,indicated
R16434 T22819 T22815 arg1Of constructs,murine
R16435 T22819 T22816 arg1Of constructs,SerpinB2
R16436 T22819 T22817 arg1Of constructs,promoter-luciferase
R16437 T22819 T22818 arg1Of constructs,reporter
R16438 T22819 T22820 arg1Of constructs,and
R16439 T22820 T22812 arg2Of and,with
R16440 T22820 T22813 arg1Of and,the
R16441 T22822 T22820 arg2Of plasmids,and
R16442 T22822 T22821 arg1Of plasmids,control
R16443 T22823 T22824 arg1Of Cells,were
R16444 T22823 T22827 arg1Of Cells,untreated
R16445 T22823 T22829 arg2Of Cells,treated
R16446 T22827 T22825 arg1Of untreated,either
R16447 T22827 T22826 arg1Of untreated,left
R16448 T22827 T22828 arg1Of untreated,or
R16449 T22828 T22824 arg2Of or,were
R16450 T22829 T22828 arg2Of treated,or
R16451 T22829 T22830 arg1Of treated,with
R16452 T22831 T22832 arg1Of 100,ng/ml
R16453 T22833 T22831 arg1Of LPS,100
R16454 T22833 T22834 arg1Of LPS,or
R16455 T22834 T22830 arg2Of or,with
R16456 T22834 T22838 arg1Of or,for
R16457 T22835 T22836 arg1Of 40,ng/ml
R16458 T22837 T22834 arg2Of PMA,or
R16459 T22837 T22835 arg1Of PMA,40
R16460 T22840 T22838 arg2Of hrs,for
R16461 T22840 T22839 arg1Of hrs,16
R16462 T22841 T22842 arg1Of Shown,is
R16463 T22848 T22842 arg2Of activity,is
R16464 T22848 T22843 arg1Of activity,the
R16465 T22848 T22844 arg1Of activity,relative
R16466 T22848 T22845 arg1Of activity,luciferase
R16467 T22848 T22846 arg1Of activity,reporter
R16468 T22848 T22847 arg1Of activity,gene
R16469 T22848 T22849 arg1Of activity,following
R16470 T22850 T22849 arg2Of treatment,following
R16471 T22852 T22851 arg1Of results,The
R16472 T22852 T22853 arg1Of results,represent
R16473 T22855 T22854 arg1Of mean,the
R16474 T22855 T22856 arg1Of mean,and
R16475 T22856 T22853 arg2Of and,represent
R16476 T22857 T22858 arg1Of SEM,of
R16477 T22861 T22858 arg2Of experiments.,of
R16478 T22861 T22859 arg1Of experiments.,four
R16479 T22861 T22860 arg1Of experiments.,independent
R16480 T22861 T22862 arg1Of experiments.,(
R16481 T22863 T22862 arg2Of C,(
R16482 T22864 T22862 arg3Of ),(
R16483 T22867 T22856 arg2Of conservation,and
R16484 T22867 T22857 arg1Of conservation,SEM
R16485 T22867 T22865 arg1Of conservation,DNA
R16486 T22867 T22866 arg1Of conservation,sequence
R16487 T22867 T22868 arg1Of conservation,between
R16488 T22870 T22871 arg1Of human,and
R16489 T22872 T22871 arg2Of murine,and
R16490 T22876 T22868 arg2Of regions,between
R16491 T22876 T22869 arg1Of regions,the
R16492 T22876 T22870 arg1Of regions,human
R16493 T22876 T22872 arg1Of regions,murine
R16494 T22876 T22873 arg1Of regions,SerpinB2
R16495 T22876 T22874 arg1Of regions,5′
R16496 T22876 T22875 arg1Of regions,flanking
R16497 T22878 T22877 arg1Of representation,Schematic
R16498 T22878 T22879 arg1Of representation,of
R16499 T22878 T22888 arg1Of representation,with
R16500 T22881 T22882 arg1Of human,and
R16501 T22883 T22882 arg2Of murine,and
R16502 T22887 T22879 arg2Of regions,of
R16503 T22887 T22880 arg1Of regions,the
R16504 T22887 T22881 arg1Of regions,human
R16505 T22887 T22883 arg1Of regions,murine
R16506 T22887 T22884 arg1Of regions,SerpinB2
R16507 T22887 T22885 arg1Of regions,5′
R16508 T22887 T22886 arg1Of regions,flanking
R16509 T22889 T22888 arg2Of regions,with
R16510 T22889 T22890 arg1Of regions,of
R16511 T22893 T22890 arg2Of identity,of
R16512 T22893 T22891 arg1Of identity,nucleotide
R16513 T22893 T22892 arg1Of identity,sequence
R16514 T22893 T22894 arg2Of identity,indicated
R16515 T22899 T22894 arg1Of boxes,indicated
R16516 T22899 T22895 arg2Of boxes,by
R16517 T22899 T22896 arg1Of boxes,the
R16518 T22899 T22897 arg1Of boxes,same
R16519 T22899 T22898 arg2Of boxes,colored
R16520 T22901 T22900 arg1Of regions,Homologous
R16521 T22901 T22902 arg1Of regions,are
R16522 T22901 T22903 arg2Of regions,interrupted
R16523 T22903 T22902 arg2Of interrupted,are
R16524 T22907 T22903 arg1Of elements,interrupted
R16525 T22907 T22904 arg2Of elements,by
R16526 T22907 T22905 arg1Of elements,repetitive
R16527 T22907 T22906 arg1Of elements,sequence
R16528 T22907 T22908 arg1Of elements,in
R16529 T22912 T22908 arg2Of regions,in
R16530 T22912 T22909 arg1Of regions,both
R16531 T22912 T22910 arg1Of regions,5′
R16532 T22912 T22911 arg1Of regions,flanking
R16533 T22914 T22913 arg1Of repeat,Alu = Alu
R16534 T22914 T22915 arg1Of repeat,","
R16535 T22915 T22925 arg1Of ",",","
R16536 T22921 T22915 arg2Of repeat,","
R16537 T22921 T22916 arg1Of repeat,ID4 = 
R16538 T22921 T22917 arg1Of repeat,ID4
R16539 T22921 T22918 arg1Of repeat,short
R16540 T22921 T22919 arg1Of repeat,interspersed
R16541 T22921 T22920 arg1Of repeat,nuclear
R16542 T22921 T22922 arg1Of repeat,(
R16543 T22923 T22922 arg2Of SINE,(
R16544 T22924 T22922 arg3Of ),(
R16545 T22925 T22935 arg1Of ",",","
R16546 T22929 T22926 arg1Of interspersed,L1 = 
R16547 T22929 T22927 arg1Of interspersed,L1
R16548 T22929 T22928 arg1Of interspersed,long
R16549 T22931 T22925 arg2Of element,","
R16550 T22931 T22929 arg1Of element,interspersed
R16551 T22931 T22930 arg1Of element,nuclear
R16552 T22931 T22932 arg1Of element,(
R16553 T22933 T22932 arg2Of LINE,(
R16554 T22934 T22932 arg3Of ),(
R16555 T22938 T22935 arg2Of LINE,","
R16556 T22938 T22936 arg1Of LINE,L2 = 
R16557 T22938 T22937 arg1Of LINE,L2
R16558 T22938 T22939 arg1Of LINE,","
R16559 T22941 T22940 arg1Of SINE,MIR = MIR
R16560 T22941 T22942 arg1Of SINE,","
R16561 T22941 T22950 arg1Of SINE,","
R16562 T22946 T22942 arg2Of repeat,","
R16563 T22946 T22943 arg1Of repeat,MLT1L = MLT1L
R16564 T22946 T22944 arg1Of repeat,long
R16565 T22946 T22945 arg1Of repeat,terminal
R16566 T22946 T22947 arg1Of repeat,(
R16567 T22948 T22947 arg2Of LTR,(
R16568 T22949 T22947 arg3Of ),(
R16569 T22950 T22939 arg2Of ",",","
R16570 T22950 T22957 arg1Of ",",","
R16571 T22952 T22951 arg2Of TATG,(
R16572 T22953 T22951 arg3Of ),(
R16573 T22956 T22950 arg2Of repeat,","
R16574 T22956 T22951 arg1Of repeat,(
R16575 T22956 T22954 arg1Of repeat,n = TATG
R16576 T22956 T22955 arg1Of repeat,tetranucleotide
R16577 T22960 T22957 arg2Of site,","
R16578 T22960 T22958 arg1Of site,tis = transcription
R16579 T22960 T22959 arg1Of site,initiation

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T22718 939-947 Protein denotes SerpinB2
T22717 860-868 Protein denotes SerpinB2
T22716 674-684 Protein denotes luciferase
T22715 490-527 Protein denotes SerpinB2 promoter-luciferase reporter
T22714 378-386 Protein denotes SerpinB2
T22713 186-196 Protein denotes luciferase
T22712 43-96 Protein denotes SerpinB2 promoter and 5′ deletion luciferase reporter

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22985 508-518 http://www.uniprot.org/uniprot/P08659 denotes luciferase
T22984 186-196 http://www.uniprot.org/uniprot/P08659 denotes luciferase
T22983 77-87 http://www.uniprot.org/uniprot/P08659 denotes luciferase
T22982 939-947 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T22981 860-868 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T22980 490-498 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T22979 378-386 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T22978 43-51 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T22988 1171-1174 http://www.uniprot.org/uniprot/P47928 denotes ID4
T22987 1164-1167 http://www.uniprot.org/uniprot/P47928 denotes ID4
T22986 674-684 http://www.uniprot.org/uniprot/P08659 denotes luciferase

GO-BP

Id Subject Object Predicate Lexical cue
T22719 1386-1399 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T22699 1146-1416 Sentence denotes Alu = Alu repeat, ID4 =  ID4 short interspersed nuclear repeat (SINE), L1 =  L1 long interspersed nuclear element (LINE), L2 =  L2 LINE, MIR = MIR SINE, MLT1L = MLT1L long terminal repeat (LTR), (TATG)n = TATG tetranucleotide repeat, tis = transcription initiation site.
T22698 1050-1145 Sentence denotes Homologous regions are interrupted by repetitive sequence elements in both 5′ flanking regions.
T22697 890-1049 Sentence denotes Schematic representation of the human and murine SerpinB2 5′ flanking regions with regions of nucleotide sequence identity indicated by the same colored boxes.
T22696 729-889 Sentence denotes The results represent the mean and SEM of four independent experiments. (C) DNA sequence conservation between the human and murine SerpinB2 5′ flanking regions.
T22695 652-728 Sentence denotes Shown is the relative luciferase reporter gene activity following treatment.
T22694 561-651 Sentence denotes Cells were either left untreated or treated with 100 ng/ml LPS or 40 ng/ml PMA for 16 hrs.
T22693 320-560 Sentence denotes Construct names indicate the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence. (B) RAW 264.7 macrophages were transiently transfected with the indicated murine SerpinB2 promoter-luciferase reporter constructs and control plasmids.
T22692 109-319 Sentence denotes The murine 5′ flanking region from −4480 to +92 was inserted upstream of the luciferase reporter gene and 5′ deletions were generated using restriction enzyme sites or with specific oligonucleotide PCR primers.
T22691 0-108 Sentence denotes (A) Schematic representation of the murine SerpinB2 promoter and 5′ deletion luciferase reporter constructs.
T131 0-108 Sentence denotes (A) Schematic representation of the murine SerpinB2 promoter and 5′ deletion luciferase reporter constructs.
T132 109-319 Sentence denotes The murine 5′ flanking region from −4480 to +92 was inserted upstream of the luciferase reporter gene and 5′ deletions were generated using restriction enzyme sites or with specific oligonucleotide PCR primers.
T133 320-560 Sentence denotes Construct names indicate the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence. (B) RAW 264.7 macrophages were transiently transfected with the indicated murine SerpinB2 promoter-luciferase reporter constructs and control plasmids.
T134 561-651 Sentence denotes Cells were either left untreated or treated with 100 ng/ml LPS or 40 ng/ml PMA for 16 hrs.
T135 652-728 Sentence denotes Shown is the relative luciferase reporter gene activity following treatment.
T136 729-889 Sentence denotes The results represent the mean and SEM of four independent experiments. (C) DNA sequence conservation between the human and murine SerpinB2 5′ flanking regions.
T137 890-1049 Sentence denotes Schematic representation of the human and murine SerpinB2 5′ flanking regions with regions of nucleotide sequence identity indicated by the same colored boxes.
T138 1050-1145 Sentence denotes Homologous regions are interrupted by repetitive sequence elements in both 5′ flanking regions.
T139 1146-1416 Sentence denotes Alu = Alu repeat, ID4 =  ID4 short interspersed nuclear repeat (SINE), L1 =  L1 long interspersed nuclear element (LINE), L2 =  L2 LINE, MIR = MIR SINE, MLT1L = MLT1L long terminal repeat (LTR), (TATG)n = TATG tetranucleotide repeat, tis = transcription initiation site.

simple1

Id Subject Object Predicate Lexical cue
T22727 939-947 Protein denotes SerpinB2
T22726 860-868 Protein denotes SerpinB2
T22725 674-684 Protein denotes luciferase
T22724 490-527 Protein denotes SerpinB2 promoter-luciferase reporter
T22723 378-386 Protein denotes SerpinB2
T22722 186-196 Protein denotes luciferase
T22721 43-96 Protein denotes SerpinB2 promoter and 5′ deletion luciferase reporter

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T22976 939-947 Protein denotes SerpinB2
T22975 860-868 Protein denotes SerpinB2
T22974 674-684 Protein denotes luciferase
T22973 490-527 Protein denotes SerpinB2 promoter-luciferase reporter
T22972 378-386 Protein denotes SerpinB2
T22971 186-196 Protein denotes luciferase
T22970 43-96 Protein denotes SerpinB2 promoter and 5′ deletion luciferase reporter

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T23014 452-463 Gene_expression denotes transfected
T23013 939-947 Protein denotes SerpinB2
T23012 860-868 Protein denotes SerpinB2
T23011 674-684 Protein denotes luciferase
T23010 490-527 Protein denotes SerpinB2 promoter-luciferase reporter
T23009 378-386 Protein denotes SerpinB2
T23008 186-196 Protein denotes luciferase
T23007 43-96 Protein denotes SerpinB2 promoter and 5′ deletion luciferase reporter
R16581 T23010 T23014 themeOf SerpinB2 promoter-luciferase reporter,transfected

DLUT931

Id Subject Object Predicate Lexical cue
T22993 490-527 Protein denotes SerpinB2 promoter-luciferase reporter
T22992 378-386 Protein denotes SerpinB2
T22991 186-196 Protein denotes luciferase
T22990 43-96 Protein denotes SerpinB2 promoter and 5′ deletion luciferase reporter
T22997 452-463 Gene_expression denotes transfected
T22996 939-947 Protein denotes SerpinB2
T22995 860-868 Protein denotes SerpinB2
T22994 674-684 Protein denotes luciferase
R16580 T22993 T22997 themeOf SerpinB2 promoter-luciferase reporter,transfected

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T23057 1283-1287 Protein denotes MIR 
T23055 345-407 Entity denotes the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence
T23054 1164-1168 Protein denotes ID4 
T23053 1347-1349 Entity denotes n 
T23092 1356-1361 Entity denotes tetra
T23090 1217-1225 Protein denotes L1 =  L1
T23089 1268-1271 Entity denotes L2 
T23088 182-210 Protein denotes the luciferase reporter gene
T23087 932-947 Protein denotes murine SerpinB2
T23086 860-868 Protein denotes SerpinB2
T23085 1274-1276 Entity denotes L2
T23084 249-273 Entity denotes restriction enzyme sites
T23083 43-96 Protein denotes SerpinB2 promoter and 5′ deletion luciferase reporter
T23082 307-310 Protein denotes PCR
T23080 579-623 Entity denotes left untreated or treated with 100 ng/ml LPS
T23079 1217-1220 Protein denotes L1 
T23078 1164-1180 Protein denotes ID4 =  ID4 short
T23077 1289-1292 Protein denotes MIR
T23076 378-386 Protein denotes SerpinB2
T23075 282-318 Entity denotes specific oligonucleotide PCR primers
T23074 413-434 Entity denotes RAW 264.7 macrophages
T23073 186-196 Protein denotes luciferase
T23072 1380-1384 Entity denotes tis 
T23070 483-518 Protein denotes murine SerpinB2 promoter-luciferase
T23069 249-267 Protein denotes restriction enzyme
T23068 694-698 Protein denotes gene
T23067 1356-1371 Entity denotes tetranucleotide
T23066 630-650 Entity denotes ng/ml PMA for 16 hrs
T23065 984-994 Entity denotes nucleotide
T23064 490-498 Protein denotes SerpinB2
T23063 805-808 Entity denotes DNA
T23062 561-566 Entity denotes Cells
T23061 483-518 Entity denotes murine SerpinB2 promoter-luciferase
T23060 1023-1048 Entity denotes by the same colored boxes
T23059 674-684 Protein denotes luciferase
T23058 644-650 Protein denotes 16 hrs
R16590 T23061 T23070 partOf murine SerpinB2 promoter-luciferase,murine SerpinB2 promoter-luciferase

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T23033 1168-1169 Positive_regulation denotes =
T23032 1168-1169 Positive_regulation denotes =
T23031 1175-1208 Protein denotes short interspersed nuclear repeat
T23030 1299-1333 Protein denotes MLT1L = MLT1L long terminal repeat
T23029 1293-1297 Protein denotes SINE
T23028 1223-1225 Protein denotes L1
T23027 1217-1219 Protein denotes L1
T23026 1171-1174 Protein denotes ID4
T23025 1164-1167 Protein denotes ID4
T23024 1146-1149 Protein denotes Alu
T23023 674-684 Protein denotes luciferase
T23022 508-518 Protein denotes luciferase
T23021 483-507 Protein denotes murine SerpinB2 promoter
T23020 186-196 Protein denotes luciferase
T23019 14-28 Gene_expression denotes representation
T23018 14-28 Gene_expression denotes representation
T23017 77-107 Protein denotes luciferase reporter constructs
T23016 36-60 Protein denotes murine SerpinB2 promoter
R16582 T23016 T23018 themeOf murine SerpinB2 promoter,representation
R16583 T23017 T23019 themeOf luciferase reporter constructs,representation
R16584 T23030 T23032 themeOf MLT1L = MLT1L long terminal repeat,=
R16585 T23031 T23033 themeOf short interspersed nuclear repeat,=

testone

Id Subject Object Predicate Lexical cue
T22673 939-947 Protein denotes SerpinB2
T22672 860-868 Protein denotes SerpinB2
T22671 674-684 Protein denotes luciferase
T22670 490-527 Protein denotes SerpinB2 promoter-luciferase reporter
T22669 378-386 Protein denotes SerpinB2
T22668 186-196 Protein denotes luciferase
T22667 43-96 Protein denotes SerpinB2 promoter and 5′ deletion luciferase reporter

test3

Id Subject Object Predicate Lexical cue
T22689 939-947 Protein denotes SerpinB2
T22688 860-868 Protein denotes SerpinB2
T22687 674-684 Protein denotes luciferase
T22686 490-527 Protein denotes SerpinB2 promoter-luciferase reporter
T22685 378-386 Protein denotes SerpinB2
T22684 186-196 Protein denotes luciferase
T22683 43-96 Protein denotes SerpinB2 promoter and 5′ deletion luciferase reporter
T22681 939-947 Protein denotes SerpinB2
T22680 860-868 Protein denotes SerpinB2
T22679 674-684 Protein denotes luciferase
T22678 490-527 Protein denotes SerpinB2 promoter-luciferase reporter
T22677 378-386 Protein denotes SerpinB2
T22676 186-196 Protein denotes luciferase
T22675 43-96 Protein denotes SerpinB2 promoter and 5′ deletion luciferase reporter