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PMC:3589482 / 197-542 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T842 344-345 DT denotes a
T841 339-343 IN denotes over
T840 329-338 JJ denotes 1000-fold
T839 328-329 CD denotes ∼
T838 325-327 IN denotes by
T837 323-324 -RRB- denotes )
T836 319-323 CD denotes TLR4
T835 318-319 -LRB- denotes (
T834 316-317 CD denotes 4
T833 307-315 NN denotes receptor
T832 297-306 JJ denotes toll-like
T831 293-296 DT denotes the
T830 289-292 IN denotes via
T829 278-288 NN denotes expression
T828 269-277 NNP denotes SerpinB2
T827 262-268 VB denotes induce
T826 258-261 MD denotes can
T825 256-257 , denotes ,
T824 247-256 NN denotes endotoxin
T823 237-246 JJ denotes bacterial
T822 230-236 JJ denotes potent
T821 228-229 DT denotes a
T820 226-227 , denotes ,
T819 225-226 -RRB- denotes )
T818 222-225 NNP denotes LPS
T817 221-222 -LRB- denotes (
T816 202-220 NNP denotes Lipopolysaccharide
T815 200-201 . denotes .
T814 190-200 NNS denotes activators
T813 178-189 NN denotes plasminogen
T812 175-177 IN denotes of
T811 164-174 NN denotes inhibition
T810 160-163 CC denotes and
T809 158-159 , denotes ,
T808 150-158 NN denotes survival
T807 139-149 NN denotes macrophage
T806 137-138 , denotes ,
T805 129-137 NN denotes immunity
T804 122-128 NN denotes innate
T803 119-121 IN denotes of
T802 108-118 NN denotes modulation
T801 104-107 DT denotes the
T800 101-103 TO denotes to
T799 94-100 VBN denotes linked
T798 91-93 VBZ denotes is
T797 87-90 CC denotes and
T796 79-86 NNS denotes stimuli
T795 66-78 JJ denotes inflammatory
T794 63-65 TO denotes to
T793 54-62 NN denotes response
T792 51-53 IN denotes in
T791 39-50 NNS denotes macrophages
T790 36-38 IN denotes in
T789 28-35 VBN denotes induced
T788 21-27 RB denotes highly
T787 18-20 VBZ denotes is
T786 16-17 -RRB- denotes )
T785 11-16 NN denotes PAI-2
T784 10-11 -LRB- denotes (
T783 8-9 CD denotes 2
T782 3-7 NN denotes type
R370 T783 T782 nummod 2,type
R371 T784 T782 punct (,type
R372 T785 T782 appos PAI-2,type
R373 T786 T782 punct ),type
R374 T787 T789 auxpass is,induced
R375 T788 T789 advmod highly,induced
R376 T789 T789 ROOT induced,induced
R377 T790 T789 prep in,induced
R378 T791 T790 pobj macrophages,in
R379 T792 T789 prep in,induced
R380 T793 T792 pobj response,in
R381 T794 T793 prep to,response
R382 T795 T796 amod inflammatory,stimuli
R383 T796 T794 pobj stimuli,to
R384 T797 T789 cc and,induced
R385 T798 T799 auxpass is,linked
R386 T799 T789 conj linked,induced
R387 T800 T799 prep to,linked
R388 T801 T802 det the,modulation
R389 T802 T800 pobj modulation,to
R390 T803 T802 prep of,modulation
R391 T804 T805 amod innate,immunity
R392 T805 T803 pobj immunity,of
R393 T806 T802 punct ",",modulation
R394 T807 T808 compound macrophage,survival
R395 T808 T802 conj survival,modulation
R396 T809 T808 punct ",",survival
R397 T810 T808 cc and,survival
R398 T811 T808 conj inhibition,survival
R399 T812 T811 prep of,inhibition
R400 T813 T814 compound plasminogen,activators
R401 T814 T812 pobj activators,of
R402 T815 T789 punct .,induced
R403 T816 T827 npadvmod Lipopolysaccharide,induce
R404 T817 T818 punct (,LPS
R405 T818 T816 appos LPS,Lipopolysaccharide
R406 T819 T816 punct ),Lipopolysaccharide
R407 T820 T816 punct ",",Lipopolysaccharide
R408 T821 T824 det a,endotoxin
R409 T822 T824 amod potent,endotoxin
R410 T823 T824 amod bacterial,endotoxin
R411 T824 T816 appos endotoxin,Lipopolysaccharide
R412 T825 T827 punct ",",induce
R413 T826 T827 aux can,induce
R414 T827 T827 ROOT induce,induce
R415 T828 T829 compound SerpinB2,expression
R416 T829 T827 dobj expression,induce
R417 T830 T827 prep via,induce
R418 T831 T833 det the,receptor
R419 T832 T833 amod toll-like,receptor
R420 T833 T830 pobj receptor,via
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor
R425 T838 T827 prep by,induce
R426 T839 T838 pobj ∼,by
R427 T840 T827 advcl 1000-fold,induce
R428 T841 T840 prep over,1000-fold

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T267 119-121 IN denotes of
T266 108-118 NN denotes modulation
T265 104-107 DT denotes the
T264 101-103 TO denotes to
T263 94-100 VB denotes linked
T262 91-93 VB denotes is
T261 87-90 CC denotes and
T260 79-86 NN denotes stimuli
T259 66-78 JJ denotes inflammatory
T258 63-65 TO denotes to
T257 54-62 NN denotes response
T256 51-53 IN denotes in
T255 39-50 NN denotes macrophages
T254 36-38 IN denotes in
T253 28-35 VB denotes induced
T252 21-27 RB denotes highly
T251 18-20 VB denotes is
T250 16-17 -RRB- denotes )
T249 11-16 NN denotes PAI-2
T248 10-11 -LRB- denotes (
T247 8-9 CD denotes 2
T246 3-7 NN denotes type
T304 344-345 DT denotes a
T303 339-343 IN denotes over
T302 328-338 RB denotes ∼1000-fold
T301 325-327 IN denotes by
T300 323-324 -RRB- denotes )
T299 319-323 NN denotes TLR4
T298 318-319 -LRB- denotes (
T297 316-317 CD denotes 4
T296 307-315 NN denotes receptor
T295 297-306 JJ denotes toll-like
T294 293-296 DT denotes the
T293 289-292 IN denotes via
T292 278-288 NN denotes expression
T291 269-277 NN denotes SerpinB2
T290 262-268 VB denotes induce
T289 258-261 MD denotes can
T288 256-257 -COMMA- denotes ,
T287 247-256 NN denotes endotoxin
T286 237-246 JJ denotes bacterial
T285 230-236 JJ denotes potent
T284 228-229 DT denotes a
T283 226-227 -COMMA- denotes ,
T282 225-226 -RRB- denotes )
T281 222-225 NN denotes LPS
T280 221-222 -LRB- denotes (
T279 202-220 NN denotes Lipopolysaccharide
T278 190-200 NN denotes activators
T277 178-189 NN denotes plasminogen
T276 175-177 IN denotes of
T275 164-174 NN denotes inhibition
T274 160-163 CC denotes and
T273 158-159 -COMMA- denotes ,
T272 150-158 NN denotes survival
T271 139-149 NN denotes macrophage
T270 137-138 -COMMA- denotes ,
T269 129-137 NN denotes immunity
T268 122-128 JJ denotes innate
R55 T246 T247 arg1Of type,2
R56 T246 T248 arg1Of type,(
R57 T246 T251 arg1Of type,is
R58 T246 T253 arg2Of type,induced
R59 T246 T262 arg1Of type,is
R60 T246 T263 arg2Of type,linked
R61 T249 T248 arg2Of PAI-2,(
R62 T250 T248 arg3Of ),(
R63 T253 T251 arg2Of induced,is
R64 T253 T252 arg1Of induced,highly
R65 T253 T254 arg1Of induced,in
R66 T253 T256 arg1Of induced,in
R67 T253 T261 arg1Of induced,and
R68 T255 T254 arg2Of macrophages,in
R69 T257 T256 arg2Of response,in
R70 T257 T258 arg1Of response,to
R71 T260 T258 arg2Of stimuli,to
R72 T260 T259 arg1Of stimuli,inflammatory
R73 T263 T261 arg2Of linked,and
R74 T263 T262 arg2Of linked,is
R75 T263 T264 arg1Of linked,to
R76 T266 T264 arg2Of modulation,to
R77 T266 T265 arg1Of modulation,the
R78 T266 T267 arg1Of modulation,of
R79 T269 T268 arg1Of immunity,innate
R80 T269 T270 arg1Of immunity,","
R81 T270 T274 arg1Of ",",and
R82 T272 T270 arg2Of survival,","
R83 T272 T271 arg1Of survival,macrophage
R84 T274 T267 arg2Of and,of
R85 T274 T273 arg1Of and,","
R86 T275 T274 arg2Of inhibition,and
R87 T275 T276 arg1Of inhibition,of
R88 T278 T276 arg2Of activators,of
R89 T278 T277 arg1Of activators,plasminogen
R90 T279 T280 arg1Of Lipopolysaccharide,(
R91 T279 T283 arg1Of Lipopolysaccharide,","
R92 T279 T289 arg1Of Lipopolysaccharide,can
R93 T279 T290 arg1Of Lipopolysaccharide,induce
R94 T281 T280 arg2Of LPS,(
R95 T282 T280 arg3Of ),(
R96 T287 T283 arg2Of endotoxin,","
R97 T287 T284 arg1Of endotoxin,a
R98 T287 T285 arg1Of endotoxin,potent
R99 T287 T286 arg1Of endotoxin,bacterial
R100 T290 T288 arg1Of induce,","
R101 T290 T289 arg2Of induce,can
R102 T290 T293 arg1Of induce,via
R103 T290 T301 arg1Of induce,by
R104 T290 T303 arg1Of induce,over
R105 T292 T290 arg2Of expression,induce
R106 T292 T291 arg1Of expression,SerpinB2
R107 T296 T293 arg2Of receptor,via
R108 T296 T294 arg1Of receptor,the
R109 T296 T295 arg1Of receptor,toll-like
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(
R114 T302 T301 arg2Of ∼1000-fold,by

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T161 11-16 Protein denotes PAI-2
T162 269-277 Protein denotes SerpinB2
T163 297-317 Protein denotes toll-like receptor 4
T164 319-323 Protein denotes TLR4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 319-323 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T531 269-277 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T537 8-14 http://www.uniprot.org/uniprot/P05120 denotes 2 (PAI

GO-BP

Id Subject Object Predicate Lexical cue
T183 164-200 http://purl.obolibrary.org/obo/GO_0010757 denotes inhibition of plasminogen activators
T182 122-137 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immunity
T180 54-78 http://purl.obolibrary.org/obo/GO_0006954 denotes response to inflammatory
T179 178-200 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activators

simple1

Id Subject Object Predicate Lexical cue
T214 11-16 Protein denotes PAI-2
T215 269-277 Protein denotes SerpinB2
T216 297-317 Protein denotes toll-like receptor 4
T217 319-323 Protein denotes TLR4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T514 262-268 Positive_regulation denotes induce
T513 278-288 Gene_expression denotes expression
T512 28-35 Positive_regulation denotes induced
T498 319-323 Protein denotes TLR4
T495 11-16 Protein denotes PAI-2
T496 269-277 Protein denotes SerpinB2
T497 297-317 Protein denotes toll-like receptor 4
R308 T513 T514 themeOf expression,induce
R679 T495 T512 themeOf PAI-2,induced
R680 T496 T513 themeOf SerpinB2,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T605 11-16 Protein denotes PAI-2
T606 269-277 Protein denotes SerpinB2
T607 297-317 Protein denotes toll-like receptor 4
T608 319-323 Protein denotes TLR4
T622 28-35 Positive_regulation denotes induced
T623 278-288 Gene_expression denotes expression
T624 262-268 Positive_regulation denotes induce
R718 T606 T623 themeOf SerpinB2,expression
R720 T607 T624 causeOf toll-like receptor 4,induce
R733 T623 T624 themeOf expression,induce

DLUT931

Id Subject Object Predicate Lexical cue
T571 11-16 Protein denotes PAI-2
T572 269-277 Protein denotes SerpinB2
T573 297-317 Protein denotes toll-like receptor 4
T574 319-323 Protein denotes TLR4
T589 28-35 Positive_regulation denotes induced
T590 278-288 Gene_expression denotes expression
T591 262-268 Positive_regulation denotes induce
R685 T572 T590 themeOf SerpinB2,expression
R686 T573 T591 causeOf toll-like receptor 4,induce
R693 T590 T591 themeOf expression,induce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T759 269-288 Gene_expression denotes SerpinB2 expression
T750 222-225 Entity denotes LPS
T748 269-277 Protein denotes SerpinB2
T705 139-149 Entity denotes macrophage
T709 202-227 Entity denotes Lipopolysaccharide (LPS),
T711 247-256 Entity denotes endotoxin
T714 293-324 Protein denotes the toll-like receptor 4 (TLR4)
T715 319-323 Protein denotes TLR4
T723 39-50 Entity denotes macrophages
T733 175-200 Entity denotes of plasminogen activators
T739 11-16 Protein denotes PAI-2
T745 178-189 Protein denotes plasminogen
R348 T748 T759 themeOf SerpinB2,SerpinB2 expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T647 262-268 Positive_regulation denotes induce
T646 278-288 Gene_expression denotes expression
T645 269-277 Protein denotes SerpinB2
T644 164-174 Negative_regulation denotes inhibition
T643 28-35 Positive_regulation denotes induced
T642 28-35 Positive_regulation denotes induced
T641 178-200 Protein denotes plasminogen activators
T640 11-16 Protein denotes PAI-2
R322 T640 T643 themeOf PAI-2,induced
R323 T641 T644 themeOf plasminogen activators,inhibition
R324 T645 T646 themeOf SerpinB2,expression
R325 T646 T647 themeOf expression,induce

testone

Id Subject Object Predicate Lexical cue
T40 278-288 Gene_expression denotes expression
T39 262-268 Positive_regulation denotes induce
T27 319-323 Protein denotes TLR4
T26 297-317 Protein denotes toll-like receptor 4
T25 269-277 Protein denotes SerpinB2
T24 11-16 Protein denotes PAI-2
R3 T27 T26 equivalentTo TLR4,toll-like receptor 4
R8 T40 T39 themeOf expression,induce
R2 T25 T40 themeOf SerpinB2,expression

test3

Id Subject Object Predicate Lexical cue
T78 319-323 Protein denotes TLR4
T77 297-317 Protein denotes toll-like receptor 4
T76 278-288 Gene_expression denotes expression
T75 269-277 Protein denotes SerpinB2
T74 262-268 Positive_regulation denotes induce
T73 28-35 Positive_regulation denotes induced
T72 11-16 Protein denotes PAI-2
T56 319-323 Protein denotes TLR4
T55 297-317 Protein denotes toll-like receptor 4
T54 269-277 Protein denotes SerpinB2
T53 11-16 Protein denotes PAI-2
R17 T75 T76 themeOf SerpinB2,expression
R18 T76 T74 themeOf expression,induce
R19 T78 T77 equivalentTo TLR4,toll-like receptor 4