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PMC:3589482 / 19572-19747 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10222 174-175 . denotes .
T10221 168-174 NN denotes region
T10220 163-167 DT denotes this
T10219 160-162 IN denotes in
T10218 152-159 NN denotes element
T10217 143-151 NN denotes silencer
T10216 141-142 DT denotes a
T10215 138-140 IN denotes of
T10214 129-137 NN denotes presence
T10213 125-128 DT denotes the
T10212 114-124 VBG denotes indicating
T10211 112-113 , denotes ,
T10210 105-112 JJ denotes 16-fold
T10209 91-104 RB denotes approximately
T10208 88-90 TO denotes to
T10207 71-87 NN denotes LPS-inducibility
T10206 61-70 VBD denotes increased
T10205 56-60 CD denotes 1341
T10204 55-56 CD denotes −
T10203 52-54 TO denotes to
T10202 47-51 CD denotes 1686
T10201 46-47 CD denotes −
T10200 41-45 IN denotes from
T10199 32-40 NN denotes promoter
T10198 23-31 NNP denotes SerpinB2
T10197 16-22 NN denotes murine
T10196 12-15 DT denotes the
T10195 9-11 IN denotes of
T10194 0-8 NN denotes Deletion
R7481 T10194 T10194 ROOT Deletion,Deletion
R7482 T10195 T10194 prep of,Deletion
R7483 T10196 T10199 det the,promoter
R7484 T10197 T10199 compound murine,promoter
R7485 T10198 T10199 compound SerpinB2,promoter
R7486 T10199 T10195 pobj promoter,of
R7487 T10200 T10194 prep from,Deletion
R7488 T10201 T10202 nummod −,1686
R7489 T10202 T10200 pobj 1686,from
R7490 T10203 T10194 prep to,Deletion
R7491 T10204 T10203 pobj −,to
R7492 T10205 T10207 nummod 1341,LPS-inducibility
R7493 T10206 T10207 amod increased,LPS-inducibility
R7494 T10207 T10203 pobj LPS-inducibility,to
R7495 T10208 T10194 prep to,Deletion
R7496 T10209 T10210 advmod approximately,16-fold
R7497 T10210 T10208 pobj 16-fold,to
R7498 T10211 T10194 punct ",",Deletion
R7499 T10212 T10194 acl indicating,Deletion
R7500 T10213 T10214 det the,presence
R7501 T10214 T10212 dobj presence,indicating
R7502 T10215 T10214 prep of,presence
R7503 T10216 T10218 det a,element
R7504 T10217 T10218 compound silencer,element
R7505 T10218 T10215 pobj element,of
R7506 T10219 T10218 prep in,element
R7507 T10220 T10221 det this,region
R7508 T10221 T10219 pobj region,in
R7509 T10222 T10194 punct .,Deletion

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9756 168-174 NN denotes region
T9755 163-167 DT denotes this
T9754 160-162 IN denotes in
T9753 152-159 NN denotes element
T9752 143-151 NN denotes silencer
T9751 141-142 DT denotes a
T9750 138-140 IN denotes of
T9749 129-137 NN denotes presence
T9748 125-128 DT denotes the
T9747 114-124 VB denotes indicating
T9746 112-113 -COMMA- denotes ,
T9745 105-112 RB denotes 16-fold
T9744 91-104 RB denotes approximately
T9743 88-90 TO denotes to
T9742 71-87 NN denotes LPS-inducibility
T9741 61-70 VB denotes increased
T9740 55-60 CD denotes −1341
T9739 52-54 TO denotes to
T9738 46-51 CD denotes −1686
T9737 41-45 IN denotes from
T9736 32-40 NN denotes promoter
T9735 23-31 NN denotes SerpinB2
T9734 16-22 JJ denotes murine
T9733 12-15 DT denotes the
T9732 9-11 IN denotes of
T9731 0-8 NN denotes Deletion
R7136 T9731 T9732 arg1Of Deletion,of
R7137 T9731 T9737 arg1Of Deletion,from
R7138 T9731 T9741 arg1Of Deletion,increased
R7139 T9736 T9732 arg2Of promoter,of
R7140 T9736 T9733 arg1Of promoter,the
R7141 T9736 T9734 arg1Of promoter,murine
R7142 T9736 T9735 arg1Of promoter,SerpinB2
R7143 T9740 T9737 arg2Of −1341,from
R7144 T9740 T9738 arg1Of −1341,−1686
R7145 T9740 T9739 arg1Of −1341,to
R7146 T9741 T9746 arg1Of increased,","
R7147 T9741 T9747 modOf increased,indicating
R7148 T9742 T9741 arg3Of LPS-inducibility,increased
R7149 T9745 T9741 arg2Of 16-fold,increased
R7150 T9745 T9743 arg2Of 16-fold,to
R7151 T9745 T9744 arg1Of 16-fold,approximately
R7152 T9749 T9747 arg2Of presence,indicating
R7153 T9749 T9748 arg1Of presence,the
R7154 T9749 T9750 arg1Of presence,of
R7155 T9753 T9750 arg2Of element,of
R7156 T9753 T9751 arg1Of element,a
R7157 T9753 T9752 arg1Of element,silencer
R7158 T9753 T9754 arg1Of element,in
R7159 T9756 T9754 arg2Of region,in
R7160 T9756 T9755 arg1Of region,this

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9532 23-31 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9892 23-31 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

sentences

Id Subject Object Predicate Lexical cue
T9474 0-175 Sentence denotes Deletion of the murine SerpinB2 promoter from −1686 to −1341 increased LPS-inducibility to approximately 16-fold, indicating the presence of a silencer element in this region.
T127 0-175 Sentence denotes Deletion of the murine SerpinB2 promoter from −1686 to −1341 increased LPS-inducibility to approximately 16-fold, indicating the presence of a silencer element in this region.

simple1

Id Subject Object Predicate Lexical cue
T9560 23-31 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9881 0-8 Negative_regulation denotes Deletion
T9880 61-70 Positive_regulation denotes increased
T9873 23-31 Protein denotes SerpinB2
R7266 T9873 T9881 themeOf SerpinB2,Deletion
R7267 T9873 T9880 themeOf SerpinB2,increased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9939 0-8 Negative_regulation denotes Deletion
T9932 23-31 Protein denotes SerpinB2
R7281 T9932 T9939 themeOf SerpinB2,Deletion

DLUT931

Id Subject Object Predicate Lexical cue
T9912 61-70 Positive_regulation denotes increased
T9911 0-8 Negative_regulation denotes Deletion
T9906 23-31 Protein denotes SerpinB2
R7276 T9906 T9911 themeOf SerpinB2,Deletion
R7279 T9911 T9912 themeOf Deletion,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T9986 71-87 Entity denotes LPS-inducibility
T9982 9-40 Entity denotes of the murine SerpinB2 promoter
T9981 23-31 Protein denotes SerpinB2
R7301 T9982 T9981 partOf of the murine SerpinB2 promoter,SerpinB2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9948 61-70 Positive_regulation denotes increased
T9947 0-8 Gene_expression denotes Deletion
T9946 16-40 Protein denotes murine SerpinB2 promoter
R7284 T9946 T9947 themeOf murine SerpinB2 promoter,Deletion
R7285 T9947 T9948 themeOf Deletion,increased

testone

Id Subject Object Predicate Lexical cue
T9444 61-70 Positive_regulation denotes increased
T9443 0-8 Negative_regulation denotes Deletion
T9438 23-31 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T9451 23-31 Protein denotes SerpinB2
T9462 23-31 Protein denotes SerpinB2