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PMC:3589482 / 19183-19402 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10161 218-219 . denotes .
T10160 217-218 NNP denotes ]
T10159 215-217 CD denotes 51
T10158 214-215 NNP denotes [
T10157 212-213 NNP denotes ]
T10156 210-212 CD denotes 47
T10155 209-210 NNP denotes [
T10154 207-208 : denotes ;
T10153 206-207 NNP denotes ]
T10152 204-206 CD denotes 37
T10151 203-204 NNP denotes [
T10150 201-202 : denotes ;
T10149 200-201 NNP denotes ]
T10148 198-200 CD denotes 30
T10147 197-198 NNP denotes [
T10146 188-196 NNS denotes elements
T10145 177-187 JJ denotes responsive
T10144 172-176 NN denotes AP-1
T10143 165-171 JJ denotes distal
T10142 161-164 CC denotes and
T10141 152-160 JJ denotes proximal
T10140 144-151 JJ denotes several
T10139 136-143 IN denotes through
T10138 130-135 VB denotes occur
T10137 127-129 TO denotes to
T10136 121-126 VBN denotes shown
T10135 116-120 VBN denotes been
T10134 112-115 VBZ denotes has
T10133 108-111 CC denotes and
T10132 106-107 , denotes ,
T10131 105-106 NNP denotes ]
T10130 103-105 CD denotes 47
T10129 102-103 NNP denotes [
T10128 100-101 NNP denotes ]
T10127 98-100 CD denotes 45
T10126 97-98 NNP denotes [
T10125 91-96 NNS denotes lines
T10124 86-90 NN denotes cell
T10123 75-85 NN denotes macrophage
T10122 69-74 JJ denotes human
T10121 66-68 IN denotes in
T10120 58-65 VBN denotes studied
T10119 46-57 RB denotes extensively
T10118 41-45 VBN denotes been
T10117 37-40 VBZ denotes has
T10116 26-36 NN denotes regulation
T10115 21-25 NN denotes gene
T10114 12-20 NNP denotes SerpinB2
T10113 0-11 JJ denotes PMA-induced
R7400 T10113 T10116 amod PMA-induced,regulation
R7401 T10114 T10116 compound SerpinB2,regulation
R7402 T10115 T10116 compound gene,regulation
R7403 T10116 T10120 nsubjpass regulation,studied
R7404 T10117 T10120 aux has,studied
R7405 T10118 T10120 auxpass been,studied
R7406 T10119 T10120 advmod extensively,studied
R7407 T10120 T10120 ROOT studied,studied
R7408 T10121 T10120 prep in,studied
R7409 T10122 T10124 amod human,cell
R7410 T10123 T10124 compound macrophage,cell
R7411 T10124 T10125 compound cell,lines
R7412 T10125 T10121 pobj lines,in
R7413 T10126 T10128 nmod [,]
R7414 T10127 T10128 nummod 45,]
R7415 T10128 T10125 appos ],lines
R7416 T10129 T10131 nmod [,]
R7417 T10130 T10131 nummod 47,]
R7418 T10131 T10128 conj ],]
R7419 T10132 T10131 punct ",",]
R7420 T10133 T10120 cc and,studied
R7421 T10134 T10136 aux has,shown
R7422 T10135 T10136 auxpass been,shown
R7423 T10136 T10120 conj shown,studied
R7424 T10137 T10138 aux to,occur
R7425 T10138 T10136 xcomp occur,shown
R7426 T10139 T10138 prep through,occur
R7427 T10140 T10146 amod several,elements
R7428 T10141 T10146 amod proximal,elements
R7429 T10142 T10141 cc and,proximal
R7430 T10143 T10141 conj distal,proximal
R7431 T10144 T10146 amod AP-1,elements
R7432 T10145 T10146 amod responsive,elements
R7433 T10146 T10139 pobj elements,through
R7434 T10147 T10149 nmod [,]
R7435 T10148 T10149 nummod 30,]
R7436 T10149 T10146 appos ],elements
R7437 T10150 T10149 punct ;,]
R7438 T10151 T10153 nmod [,]
R7439 T10152 T10153 nummod 37,]
R7440 T10153 T10149 conj ],]
R7441 T10154 T10149 punct ;,]
R7442 T10155 T10149 conj [,]
R7443 T10156 T10157 nummod 47,]
R7444 T10157 T10149 conj ],]
R7445 T10158 T10146 appos [,elements
R7446 T10159 T10160 nummod 51,]
R7447 T10160 T10158 appos ],[
R7448 T10161 T10120 punct .,studied

2_test

Id Subject Object Predicate Lexical cue
23472114-1354603-87899177 98-100 1354603 denotes 45
23472114-8916932-87899178 198-200 8916932 denotes 30
23472114-8262378-87899179 215-217 8262378 denotes 51
T40363 98-100 1354603 denotes 45
T4480 198-200 8916932 denotes 30
T43659 215-217 8262378 denotes 51

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9702 217-218 -RRB- denotes ]
T9701 215-217 CD denotes 51
T9700 214-215 -LRB- denotes [
T9699 213-214 CD denotes –
T9698 212-213 -RRB- denotes ]
T9697 210-212 CD denotes 47
T9696 209-210 -LRB- denotes [
T9695 207-208 -COLON- denotes ;
T9694 206-207 -RRB- denotes ]
T9693 204-206 CD denotes 37
T9692 203-204 -LRB- denotes [
T9691 201-202 -COLON- denotes ;
T9690 200-201 -RRB- denotes ]
T9689 198-200 CD denotes 30
T9688 197-198 -LRB- denotes [
T9687 188-196 NN denotes elements
T9686 177-187 JJ denotes responsive
T9685 172-176 NN denotes AP-1
T9684 165-171 JJ denotes distal
T9683 161-164 CC denotes and
T9682 152-160 JJ denotes proximal
T9681 144-151 JJ denotes several
T9680 136-143 IN denotes through
T9679 130-135 VB denotes occur
T9678 127-129 TO denotes to
T9677 121-126 VB denotes shown
T9676 116-120 VB denotes been
T9675 112-115 VB denotes has
T9674 108-111 CC denotes and
T9673 106-107 -COMMA- denotes ,
T9672 105-106 -RRB- denotes ]
T9671 103-105 CD denotes 47
T9670 102-103 -LRB- denotes [
T9669 101-102 CD denotes –
T9668 100-101 -RRB- denotes ]
T9667 98-100 CD denotes 45
T9666 97-98 -LRB- denotes [
T9665 91-96 NN denotes lines
T9664 86-90 NN denotes cell
T9663 75-85 NN denotes macrophage
T9662 69-74 JJ denotes human
T9661 66-68 IN denotes in
T9660 58-65 VB denotes studied
T9659 46-57 RB denotes extensively
T9658 41-45 VB denotes been
T9657 37-40 VB denotes has
T9656 26-36 NN denotes regulation
T9655 21-25 NN denotes gene
T9654 12-20 NN denotes SerpinB2
T9653 0-11 JJ denotes PMA-induced
R7051 T9656 T9653 arg1Of regulation,PMA-induced
R7052 T9656 T9654 arg1Of regulation,SerpinB2
R7053 T9656 T9655 arg1Of regulation,gene
R7054 T9656 T9657 arg1Of regulation,has
R7055 T9656 T9658 arg1Of regulation,been
R7056 T9656 T9660 arg2Of regulation,studied
R7057 T9656 T9675 arg1Of regulation,has
R7058 T9656 T9676 arg1Of regulation,been
R7059 T9656 T9677 arg2Of regulation,shown
R7060 T9656 T9679 arg1Of regulation,occur
R7061 T9660 T9657 arg2Of studied,has
R7062 T9660 T9658 arg2Of studied,been
R7063 T9660 T9659 arg1Of studied,extensively
R7064 T9660 T9661 arg1Of studied,in
R7065 T9660 T9674 arg1Of studied,and
R7066 T9665 T9661 arg2Of lines,in
R7067 T9665 T9662 arg1Of lines,human
R7068 T9665 T9663 arg1Of lines,macrophage
R7069 T9665 T9664 arg1Of lines,cell
R7070 T9665 T9666 arg1Of lines,[
R7071 T9665 T9669 arg1Of lines,–
R7072 T9665 T9670 arg1Of lines,[
R7073 T9667 T9666 arg2Of 45,[
R7074 T9668 T9666 arg3Of ],[
R7075 T9671 T9670 arg2Of 47,[
R7076 T9672 T9670 arg3Of ],[
R7077 T9674 T9673 arg1Of and,","
R7078 T9674 T9688 arg1Of and,[
R7079 T9674 T9691 arg1Of and,;
R7080 T9674 T9692 arg1Of and,[
R7081 T9674 T9695 arg1Of and,;
R7082 T9674 T9696 arg1Of and,[
R7083 T9674 T9699 arg1Of and,–
R7084 T9674 T9700 arg1Of and,[
R7085 T9677 T9674 arg2Of shown,and
R7086 T9677 T9675 arg2Of shown,has
R7087 T9677 T9676 arg2Of shown,been
R7088 T9679 T9677 arg3Of occur,shown
R7089 T9679 T9678 arg1Of occur,to
R7090 T9679 T9680 arg1Of occur,through
R7091 T9682 T9683 arg1Of proximal,and
R7092 T9684 T9683 arg2Of distal,and
R7093 T9687 T9680 arg2Of elements,through
R7094 T9687 T9681 arg1Of elements,several
R7095 T9687 T9682 arg1Of elements,proximal
R7096 T9687 T9684 arg1Of elements,distal
R7097 T9687 T9685 arg1Of elements,AP-1
R7098 T9687 T9686 arg1Of elements,responsive
R7099 T9689 T9688 arg2Of 30,[
R7100 T9690 T9688 arg3Of ],[
R7101 T9693 T9692 arg2Of 37,[
R7102 T9694 T9692 arg3Of ],[
R7103 T9697 T9696 arg2Of 47,[
R7104 T9698 T9696 arg3Of ],[
R7105 T9701 T9700 arg2Of 51,[
R7106 T9702 T9700 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9530 12-20 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9899 172-176 http://www.uniprot.org/uniprot/P05412 denotes AP-1
T9890 12-20 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

UBERON-AE

Id Subject Object Predicate Lexical cue
T9468 46-57 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extensively

GO-BP

Id Subject Object Predicate Lexical cue
T9542 26-36 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation

GO-CC

Id Subject Object Predicate Lexical cue
T9553 86-90 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T9472 0-219 Sentence denotes PMA-induced SerpinB2 gene regulation has been extensively studied in human macrophage cell lines [45]–[47], and has been shown to occur through several proximal and distal AP-1 responsive elements [30]; [37]; [47]–[51].
T125 0-219 Sentence denotes PMA-induced SerpinB2 gene regulation has been extensively studied in human macrophage cell lines [45]–[47], and has been shown to occur through several proximal and distal AP-1 responsive elements [30]; [37]; [47]–[51].

simple1

Id Subject Object Predicate Lexical cue
T9558 12-20 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9879 26-36 Regulation denotes regulation
T9878 0-11 Positive_regulation denotes PMA-induced
T9871 12-20 Protein denotes SerpinB2
R7264 T9871 T9878 themeOf SerpinB2,PMA-induced
R7265 T9871 T9879 themeOf SerpinB2,regulation
R7273 T9879 T9878 themeOf regulation,PMA-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9938 0-11 Positive_regulation denotes PMA-induced
T9937 26-36 Regulation denotes regulation
T9930 12-20 Protein denotes SerpinB2
R7280 T9930 T9937 themeOf SerpinB2,regulation
R7283 T9937 T9938 themeOf regulation,PMA-induced

DLUT931

Id Subject Object Predicate Lexical cue
T9904 12-20 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10018 0-101 Regulation denotes PMA-induced SerpinB2 gene regulation has been extensively studied in human macrophage cell lines [45]
T10007 12-25 Protein denotes SerpinB2 gene
T10000 0-11 Entity denotes PMA-induced
T9998 12-20 Protein denotes SerpinB2
T9997 172-187 Protein denotes AP-1 responsive
T9992 75-85 Entity denotes macrophage
R7305 T10007 T10018 themeOf SerpinB2 gene,PMA-induced SerpinB2 gene regulation has been extensively studied in human macrophage cell lines [45]

testone

Id Subject Object Predicate Lexical cue
T9436 12-20 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T9449 12-20 Protein denotes SerpinB2
T9460 12-20 Protein denotes SerpinB2