PMC:3589482 / 18252-18620 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

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    pmc-enju-pas

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    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T22412","span":{"begin":341,"end":346},"obj":"Protein"},{"id":"T22411","span":{"begin":268,"end":276},"obj":"Protein"},{"id":"T22410","span":{"begin":140,"end":147},"obj":"Protein"},{"id":"T22409","span":{"begin":106,"end":114},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"RAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T22511","span":{"begin":341,"end":346},"obj":"http://www.uniprot.org/uniprot/P04406"},{"id":"T22510","span":{"begin":140,"end":147},"obj":"http://www.uniprot.org/uniprot/P60709"},{"id":"T22509","span":{"begin":268,"end":276},"obj":"http://www.uniprot.org/uniprot/P05120"},{"id":"T22508","span":{"begin":106,"end":114},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"RAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T22414","span":{"begin":305,"end":309},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"RAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

    sentences

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    simple1

    {"project":"simple1","denotations":[{"id":"T22419","span":{"begin":341,"end":346},"obj":"Protein"},{"id":"T22418","span":{"begin":268,"end":276},"obj":"Protein"},{"id":"T22417","span":{"begin":140,"end":147},"obj":"Protein"},{"id":"T22416","span":{"begin":106,"end":114},"obj":"Protein"}],"text":"RAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T22506","span":{"begin":285,"end":295},"obj":"Gene_expression"},{"id":"T22505","span":{"begin":120,"end":126},"obj":"Transcription"},{"id":"T22502","span":{"begin":341,"end":346},"obj":"Protein"},{"id":"T22501","span":{"begin":268,"end":276},"obj":"Protein"},{"id":"T22500","span":{"begin":140,"end":147},"obj":"Protein"},{"id":"T22499","span":{"begin":106,"end":114},"obj":"Protein"}],"relations":[{"id":"R16243","pred":"themeOf","subj":"T22499","obj":"T22505"},{"id":"R16244","pred":"themeOf","subj":"T22501","obj":"T22506"}],"text":"RAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T22534","span":{"begin":285,"end":295},"obj":"Gene_expression"},{"id":"T22531","span":{"begin":341,"end":346},"obj":"Protein"},{"id":"T22530","span":{"begin":268,"end":276},"obj":"Protein"},{"id":"T22529","span":{"begin":140,"end":147},"obj":"Protein"},{"id":"T22528","span":{"begin":106,"end":114},"obj":"Protein"}],"relations":[{"id":"R16254","pred":"themeOf","subj":"T22530","obj":"T22534"}],"text":"RAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T22519","span":{"begin":285,"end":295},"obj":"Gene_expression"},{"id":"T22516","span":{"begin":341,"end":346},"obj":"Protein"},{"id":"T22515","span":{"begin":268,"end":276},"obj":"Protein"},{"id":"T22514","span":{"begin":140,"end":147},"obj":"Protein"},{"id":"T22513","span":{"begin":106,"end":114},"obj":"Protein"}],"relations":[{"id":"R16248","pred":"themeOf","subj":"T22515","obj":"T22519"}],"text":"RAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T22571","span":{"begin":256,"end":317},"obj":"Gene_expression"},{"id":"T22570","span":{"begin":350,"end":367},"obj":"Regulation"},{"id":"T22567","span":{"begin":0,"end":20},"obj":"Entity"},{"id":"T22566","span":{"begin":82,"end":86},"obj":"Protein"},{"id":"T22565","span":{"begin":67,"end":76},"obj":"Entity"},{"id":"T22563","span":{"begin":341,"end":346},"obj":"Protein"},{"id":"T22562","span":{"begin":115,"end":119},"obj":"Protein"},{"id":"T22561","span":{"begin":96,"end":127},"obj":"Protein"},{"id":"T22560","span":{"begin":268,"end":276},"obj":"Protein"},{"id":"T22557","span":{"begin":140,"end":147},"obj":"Protein"},{"id":"T22555","span":{"begin":268,"end":284},"obj":"Protein"}],"relations":[{"id":"R16264","pred":"themeOf","subj":"T22555","obj":"T22571"}],"text":"RAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T22544","span":{"begin":341,"end":346},"obj":"Protein"},{"id":"T22543","span":{"begin":319,"end":323},"obj":"Protein"},{"id":"T22542","span":{"begin":285,"end":295},"obj":"Gene_expression"},{"id":"T22541","span":{"begin":268,"end":284},"obj":"Protein"},{"id":"T22540","span":{"begin":140,"end":147},"obj":"Protein"},{"id":"T22539","span":{"begin":106,"end":119},"obj":"Protein"}],"relations":[{"id":"R16259","pred":"themeOf","subj":"T22541","obj":"T22542"}],"text":"RAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

    testone

    {"project":"testone","denotations":[{"id":"T22382","span":{"begin":285,"end":295},"obj":"Gene_expression"},{"id":"T22379","span":{"begin":341,"end":346},"obj":"Protein"},{"id":"T22378","span":{"begin":268,"end":276},"obj":"Protein"},{"id":"T22377","span":{"begin":140,"end":147},"obj":"Protein"},{"id":"T22376","span":{"begin":106,"end":114},"obj":"Protein"}],"relations":[{"id":"R16161","pred":"themeOf","subj":"T22378","obj":"T22382"}],"text":"RAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

    test3

    {"project":"test3","denotations":[{"id":"T22395","span":{"begin":341,"end":346},"obj":"Protein"},{"id":"T22394","span":{"begin":285,"end":295},"obj":"Gene_expression"},{"id":"T22393","span":{"begin":268,"end":276},"obj":"Protein"},{"id":"T22392","span":{"begin":140,"end":147},"obj":"Protein"},{"id":"T22391","span":{"begin":106,"end":114},"obj":"Protein"},{"id":"T22387","span":{"begin":341,"end":346},"obj":"Protein"},{"id":"T22386","span":{"begin":268,"end":276},"obj":"Protein"},{"id":"T22385","span":{"begin":140,"end":147},"obj":"Protein"},{"id":"T22384","span":{"begin":106,"end":114},"obj":"Protein"}],"relations":[{"id":"R16165","pred":"themeOf","subj":"T22393","obj":"T22394"}],"text":"RAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}