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PMC:3589482 / 18126-18251 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T22585 124-125 . denotes .
T22584 119-124 NNS denotes cells
T22583 108-118 NN denotes macrophage
T22582 101-107 JJ denotes murine
T22581 98-100 IN denotes in
T22580 87-97 NN denotes expression
T22579 79-86 NN denotes protein
T22578 75-78 CC denotes and
T22577 70-74 NNP denotes mRNA
T22576 61-69 NNP denotes SerpinB2
T22575 58-60 IN denotes of
T22574 48-57 NN denotes induction
T22573 44-47 NNP denotes LPS
R16266 T22573 T22574 compound LPS,induction
R16267 T22574 T22580 nmod induction,expression
R16268 T22575 T22574 prep of,induction
R16269 T22576 T22577 compound SerpinB2,mRNA
R16270 T22577 T22575 pobj mRNA,of
R16271 T22578 T22577 cc and,mRNA
R16272 T22579 T22580 compound protein,expression
R16273 T22580 T22580 ROOT expression,expression
R16274 T22581 T22580 prep in,expression
R16275 T22582 T22584 amod murine,cells
R16276 T22583 T22584 compound macrophage,cells
R16277 T22584 T22581 pobj cells,in
R16278 T22585 T22580 punct .,expression

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T22431 119-124 NN denotes cells
T22430 108-118 NN denotes macrophage
T22429 101-107 JJ denotes murine
T22428 98-100 IN denotes in
T22427 87-97 NN denotes expression
T22426 79-86 NN denotes protein
T22425 75-78 CC denotes and
T22424 70-74 NN denotes mRNA
T22423 61-69 NN denotes SerpinB2
T22422 58-60 IN denotes of
T22421 48-57 NN denotes induction
T22420 44-47 NN denotes LPS
R16169 T22421 T22420 arg1Of induction,LPS
R16170 T22421 T22422 arg1Of induction,of
R16171 T22421 T22428 arg1Of induction,in
R16172 T22424 T22423 arg1Of mRNA,SerpinB2
R16173 T22424 T22425 arg1Of mRNA,and
R16174 T22425 T22422 arg2Of and,of
R16175 T22427 T22425 arg2Of expression,and
R16176 T22427 T22426 arg1Of expression,protein
R16177 T22431 T22428 arg2Of cells,in
R16178 T22431 T22429 arg1Of cells,murine
R16179 T22431 T22430 arg1Of cells,macrophage

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T22408 61-69 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22507 61-69 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-CC

Id Subject Object Predicate Lexical cue
T22413 119-124 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T22396 44-125 Sentence denotes LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.
T118 0-125 Sentence denotes 10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.

simple1

Id Subject Object Predicate Lexical cue
T22415 61-69 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T22504 87-97 Gene_expression denotes expression
T22503 48-57 Positive_regulation denotes induction
T22498 61-69 Protein denotes SerpinB2
R16241 T22498 T22503 themeOf SerpinB2,induction
R16242 T22498 T22504 themeOf SerpinB2,expression
R16245 T22504 T22503 themeOf expression,induction

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T22533 48-57 Positive_regulation denotes induction
T22532 87-97 Gene_expression denotes expression
T22527 61-69 Protein denotes SerpinB2
R16252 T22527 T22533 themeOf SerpinB2,induction
R16253 T22527 T22532 themeOf SerpinB2,expression
R16255 T22532 T22533 themeOf expression,induction

DLUT931

Id Subject Object Predicate Lexical cue
T22518 87-97 Gene_expression denotes expression
T22517 48-57 Positive_regulation denotes induction
T22512 61-69 Protein denotes SerpinB2
R16246 T22512 T22517 themeOf SerpinB2,induction
R16247 T22512 T22518 themeOf SerpinB2,expression
R16249 T22518 T22517 themeOf expression,induction

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T22572 79-97 Gene_expression denotes protein expression
T22569 61-74 Protein denotes SerpinB2 mRNA
T22568 108-118 Entity denotes macrophage
T22564 101-124 Entity denotes murine macrophage cells
T22559 44-47 Entity denotes LPS
T22558 79-86 Protein denotes protein
T22556 61-69 Protein denotes SerpinB2
R16265 T22558 T22572 themeOf protein,protein expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T22538 48-57 Positive_regulation denotes induction
T22537 87-97 Gene_expression denotes expression
T22536 48-57 Positive_regulation denotes induction
T22535 61-74 Protein denotes SerpinB2 mRNA
R16256 T22535 T22536 themeOf SerpinB2 mRNA,induction
R16257 T22535 T22537 themeOf SerpinB2 mRNA,expression
R16258 T22537 T22538 themeOf expression,induction

testone

Id Subject Object Predicate Lexical cue
T22381 87-97 Gene_expression denotes expression
T22380 48-57 Positive_regulation denotes induction
T22375 61-69 Protein denotes SerpinB2
R16160 T22375 T22380 themeOf SerpinB2,induction
R16162 T22381 T22380 themeOf expression,induction

test3

Id Subject Object Predicate Lexical cue
T22390 87-97 Gene_expression denotes expression
T22389 61-69 Protein denotes SerpinB2
T22388 48-57 Positive_regulation denotes induction
T22383 61-69 Protein denotes SerpinB2
R16163 T22389 T22390 themeOf SerpinB2,expression
R16164 T22390 T22388 themeOf expression,induction