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PMC:3589482 / 17450-18620 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T22652 1169-1170 . denotes .
T22651 1162-1169 NN denotes control
T22650 1154-1161 VBG denotes loading
T22649 1152-1153 DT denotes a
T22648 1149-1151 IN denotes as
T22647 1143-1148 NNP denotes GAPDH
T22646 1139-1142 IN denotes for
T22645 1130-1138 VBN denotes reprobed
T22644 1126-1129 VBD denotes was
T22643 1121-1125 NNP denotes Blot
T22642 1119-1120 . denotes .
T22641 1112-1119 VBZ denotes lysates
T22640 1107-1111 NN denotes cell
T22639 1101-1106 JJ denotes whole
T22638 1098-1100 IN denotes in
T22637 1087-1097 NN denotes expression
T22636 1079-1086 NN denotes protein
T22635 1070-1078 CD denotes SerpinB2
T22634 1067-1069 IN denotes of
T22633 1058-1066 NN denotes analysis
T22632 1047-1057 NNP denotes Immunoblot
T22631 1045-1046 -RRB- denotes )
T22630 1044-1045 NNP denotes B
T22629 1043-1044 -LRB- denotes (
T22628 1041-1042 . denotes .
T22627 1031-1041 NN denotes triplicate
T22626 1028-1030 IN denotes in
T22625 1018-1027 VBN denotes performed
T22624 1006-1017 NNS denotes experiments
T22623 994-1005 JJ denotes independent
T22622 990-993 CD denotes two
T22621 984-989 JJS denotes least
T22596 865-868 CD denotes 100
T22595 860-864 IN denotes with
T22594 854-859 NNS denotes times
T22593 844-853 JJ denotes indicated
T22592 840-843 DT denotes the
T22591 836-839 IN denotes for
T22590 828-835 VBN denotes treated
T22589 823-827 VBD denotes were
T22588 811-822 NNS denotes macrophages
T22587 808-810 CD denotes .7
T22586 802-808 CD denotes RAW264
T22585 800-801 . denotes .
T22584 795-800 NNS denotes cells
T22583 784-794 NN denotes macrophage
T22582 777-783 JJ denotes murine
T22581 774-776 IN denotes in
T22580 763-773 NN denotes expression
T22579 755-762 NN denotes protein
T22578 751-754 CC denotes and
T22577 746-750 NNP denotes mRNA
T22576 737-745 NNP denotes SerpinB2
T22575 734-736 IN denotes of
T22574 724-733 NN denotes induction
T22573 720-723 NNP denotes LPS
T22620 981-983 IN denotes at
T22619 978-980 IN denotes of
T22618 963-977 NN denotes representative
T22617 960-962 VBZ denotes is
T22616 955-959 NN denotes plot
T22615 951-954 DT denotes The
T22614 949-950 . denotes .
T22613 942-949 VB denotes β-actin
T22612 939-941 TO denotes to
T22611 930-938 JJ denotes relative
T22610 928-929 , denotes ,
T22609 922-928 NNS denotes levels
T22608 917-921 NNP denotes mRNA
T22607 908-916 NNP denotes SerpinB2
T22606 901-907 JJ denotes murine
T22605 898-900 IN denotes of
T22604 889-897 NN denotes analysis
T22603 884-888 NNP denotes qPCR
T22602 882-883 -RRB- denotes )
T22601 881-882 NNP denotes A
T22600 880-881 -LRB- denotes (
T22599 878-879 . denotes .
T22598 875-878 NNP denotes LPS
T22597 869-874 JJ denotes ng/ml
T9415 674-675 . denotes .
T9414 673-674 -RRB- denotes )
T9413 672-673 LS denotes 1
T9412 667-671 FW denotes Fig.
T9411 666-667 -LRB- denotes (
T9410 656-665 NN denotes treatment
T9409 652-655 NNP denotes LPS
T9408 649-651 IN denotes of
T9407 645-648 NNS denotes hrs
T9406 643-644 CD denotes 8
T9405 637-642 IN denotes after
T9404 626-636 JJ denotes detectable
T9403 622-625 CC denotes and
T9402 620-621 , denotes ,
T9401 619-620 NNP denotes ]
T9400 617-619 CD denotes 31
T9399 616-617 NNP denotes [
T9398 610-615 NNS denotes types
T9397 605-609 NN denotes cell
T9396 599-604 JJ denotes other
T9395 596-598 IN denotes in
T9394 587-595 VBN denotes reported
T9393 582-586 VBN denotes been
T9392 578-581 VBZ denotes has
T9391 575-577 IN denotes as
T9390 567-574 VBN denotes induced
T9389 562-566 RB denotes also
T9388 558-561 VBD denotes was
T9387 547-557 NN denotes expression
T9386 539-546 NN denotes protein
T9385 530-538 CD denotes SerpinB2
T9384 528-529 . denotes .
T9383 527-528 NNP denotes ]
T9382 525-527 CD denotes 44
T9381 524-525 NNP denotes [
T9380 522-523 NNP denotes ]
T9379 520-522 CD denotes 42
T9378 519-520 NNP denotes [
T9377 517-518 : denotes ;
T9376 516-517 NNP denotes ]
T9375 514-516 CD denotes 29
T9374 513-514 NNP denotes [
T9373 511-512 : denotes ;
T9372 510-511 NNP denotes ]
T9371 509-510 CD denotes 5
T9370 508-509 NNP denotes [
T9369 503-507 NNP denotes mRNA
T9368 499-502 DT denotes the
T9367 496-498 IN denotes of
T9366 482-495 NN denotes stabilization
T9365 478-481 CC denotes and
T9364 464-477 NN denotes transcription
T9363 459-463 NN denotes gene
T9362 456-458 IN denotes in
T9361 447-455 NN denotes increase
T9360 444-446 DT denotes an
T9359 439-443 DT denotes both
T9358 430-438 VBZ denotes involves
T9357 419-429 NN denotes expression
T9356 410-418 JJ denotes SerpinB2
T9355 398-409 JJ denotes LPS-induced
T9354 396-397 . denotes .
T9353 395-396 NNP denotes ]
T9352 393-395 CD denotes 32
T9351 392-393 NNP denotes [
T9350 390-391 : denotes ;
T9349 389-390 NNP denotes ]
T9348 388-389 CD denotes 4
T9347 387-388 VBP denotes [
T9346 381-386 NNS denotes cells
T9345 369-380 NN denotes mononuclear
T9344 363-368 NN denotes blood
T9343 352-362 JJ denotes peripheral
T9342 346-351 JJ denotes human
T9341 342-345 CC denotes and
T9340 330-341 NNS denotes macrophages
T9339 319-329 JJ denotes peritoneal
T9338 312-318 JJ denotes murine
T9337 309-311 IN denotes in
T9336 298-308 RB denotes previously
T9335 289-297 VBN denotes reported
T9334 284-288 VBN denotes been
T9333 280-283 VBZ denotes has
T9332 269-279 NN denotes expression
T9331 264-268 NNP denotes mRNA
T9330 255-263 NNP denotes SerpinB2
T9329 241-254 JJ denotes LPS-inducible
T9328 238-240 IN denotes of
T9327 228-237 NN denotes induction
T9326 221-227 JJ denotes strong
T9325 213-220 JJ denotes similar
T9324 211-212 DT denotes A
T9323 209-210 . denotes .
T9322 208-209 -RRB- denotes )
T9321 206-208 NNP denotes 1A
T9320 201-205 NNP denotes Fig.
T9319 200-201 -LRB- denotes (
T9318 196-199 NNS denotes hrs
T9317 193-195 CD denotes 24
T9316 190-192 IN denotes at
T9315 183-189 NNS denotes levels
T9314 175-182 JJ denotes maximal
T9313 166-174 VBG denotes reaching
T9312 164-165 , denotes ,
T9311 155-164 NN denotes challenge
T9310 151-154 NNP denotes LPS
T9309 141-150 VBG denotes following
T9308 137-140 NN denotes min
T9307 134-136 CD denotes 30
T9306 131-133 IN denotes as
T9305 125-130 JJ denotes early
T9304 122-124 IN denotes as
T9303 111-121 JJ denotes detectable
T9302 107-110 VBD denotes was
T9301 102-106 NNP denotes mRNA
T9300 93-101 NNP denotes SerpinB2
T9299 91-92 , denotes ,
T9298 88-91 NNP denotes LPS
T9297 85-87 TO denotes to
T9296 77-84 VBN denotes exposed
T9295 72-76 VBD denotes were
T9294 60-71 NNS denotes macrophages
T9293 57-59 CD denotes .7
T9292 51-57 NNP denotes RAW264
T9291 46-50 WRB denotes When
T9290 42-45 NNP denotes LPS
T9289 39-41 TO denotes to
T9288 28-38 NNP denotes Responsive
T9287 21-27 NNP denotes Highly
T9286 18-20 VBZ denotes is
T9285 13-17 NNP denotes Gene
T9284 4-12 NNP denotes SerpinB2
T9283 0-3 DT denotes The
R6785 T9283 T9285 det The,Gene
R6786 T9284 T9285 compound SerpinB2,Gene
R6787 T9285 T9286 nsubj Gene,is
R6788 T9286 T9286 ROOT is,is
R6789 T9287 T9288 compound Highly,Responsive
R6790 T9288 T9286 attr Responsive,is
R6791 T9289 T9288 prep to,Responsive
R6792 T9290 T9289 pobj LPS,to
R6793 T9291 T9296 advmod When,exposed
R6794 T9292 T9296 nsubjpass RAW264,exposed
R6795 T9293 T9292 nummod .7,RAW264
R6796 T9294 T9296 nsubjpass macrophages,exposed
R6797 T9295 T9296 auxpass were,exposed
R6798 T9296 T9302 advcl exposed,was
R6799 T9297 T9296 prep to,exposed
R6800 T9298 T9297 pobj LPS,to
R6801 T9299 T9298 punct ",",LPS
R6802 T9300 T9301 compound SerpinB2,mRNA
R6803 T9301 T9298 appos mRNA,LPS
R6804 T9302 T9286 conj was,is
R6805 T9303 T9302 acomp detectable,was
R6806 T9304 T9305 advmod as,early
R6807 T9305 T9303 advmod early,detectable
R6808 T9306 T9305 prep as,early
R6809 T9307 T9308 nummod 30,min
R6810 T9308 T9306 pobj min,as
R6811 T9309 T9308 prep following,min
R6812 T9310 T9311 compound LPS,challenge
R6813 T9311 T9309 pobj challenge,following
R6814 T9312 T9308 punct ",",min
R6815 T9313 T9302 advcl reaching,was
R6816 T9314 T9315 amod maximal,levels
R6817 T9315 T9313 dobj levels,reaching
R6818 T9316 T9315 prep at,levels
R6819 T9317 T9318 nummod 24,hrs
R6820 T9318 T9316 pobj hrs,at
R6821 T9319 T9318 punct (,hrs
R6822 T9320 T9321 compound Fig.,1A
R6823 T9321 T9318 appos 1A,hrs
R6824 T9322 T9318 punct ),hrs
R6825 T9323 T9302 punct .,was
R6826 T9324 T9327 det A,induction
R6827 T9325 T9327 amod similar,induction
R6828 T9326 T9327 amod strong,induction
R6829 T9327 T9335 nsubjpass induction,reported
R6830 T9328 T9327 prep of,induction
R6831 T9329 T9332 amod LPS-inducible,expression
R6832 T9330 T9331 compound SerpinB2,mRNA
R6833 T9331 T9332 compound mRNA,expression
R6834 T9332 T9328 pobj expression,of
R6835 T9333 T9335 aux has,reported
R6836 T9334 T9335 auxpass been,reported
R6837 T9335 T9335 ROOT reported,reported
R6838 T9336 T9335 advmod previously,reported
R6839 T9337 T9335 prep in,reported
R6840 T9338 T9340 amod murine,macrophages
R6841 T9339 T9340 amod peritoneal,macrophages
R6842 T9340 T9337 pobj macrophages,in
R6843 T9341 T9340 cc and,macrophages
R6844 T9342 T9344 amod human,blood
R6845 T9343 T9344 compound peripheral,blood
R6846 T9344 T9346 compound blood,cells
R6847 T9345 T9346 compound mononuclear,cells
R6848 T9346 T9340 conj cells,macrophages
R6849 T9347 T9349 nmod [,]
R6850 T9348 T9349 nummod 4,]
R6851 T9349 T9335 npadvmod ],reported
R6852 T9350 T9349 punct ;,]
R6853 T9351 T9349 conj [,]
R6854 T9352 T9353 nummod 32,]
R6855 T9353 T9349 conj ],]
R6856 T9354 T9335 punct .,reported
R6857 T9355 T9357 amod LPS-induced,expression
R6858 T9356 T9357 amod SerpinB2,expression
R6859 T9357 T9358 nsubj expression,involves
R6860 T9358 T9358 ROOT involves,involves
R6861 T9359 T9361 nsubj both,increase
R6862 T9360 T9361 det an,increase
R6863 T9361 T9358 dobj increase,involves
R6864 T9362 T9361 prep in,increase
R6865 T9363 T9364 compound gene,transcription
R6866 T9364 T9362 pobj transcription,in
R6867 T9365 T9364 cc and,transcription
R6868 T9366 T9364 conj stabilization,transcription
R6869 T9367 T9366 prep of,stabilization
R6870 T9368 T9372 det the,]
R6871 T9369 T9370 compound mRNA,[
R6872 T9370 T9372 nmod [,]
R6873 T9371 T9372 nummod 5,]
R6874 T9372 T9367 pobj ],of
R6875 T9373 T9358 punct ;,involves
R6876 T9374 T9376 compound [,]
R6877 T9375 T9376 compound 29,]
R6878 T9376 T9358 dep ],involves
R6879 T9377 T9376 punct ;,]
R6880 T9378 T9380 nmod [,]
R6881 T9379 T9380 nummod 42,]
R6882 T9380 T9381 meta ],[
R6883 T9381 T9376 appos [,]
R6884 T9382 T9383 nummod 44,]
R6885 T9383 T9381 dobj ],[
R6886 T9384 T9381 punct .,[
R6887 T9385 T9387 nummod SerpinB2,expression
R6888 T9386 T9387 compound protein,expression
R6889 T9387 T9390 nsubjpass expression,induced
R6890 T9388 T9390 auxpass was,induced
R6891 T9389 T9390 advmod also,induced
R6892 T9390 T9390 ROOT induced,induced
R6893 T9391 T9394 mark as,reported
R6894 T9392 T9394 aux has,reported
R6895 T9393 T9394 auxpass been,reported
R6896 T9394 T9390 advcl reported,induced
R6897 T9395 T9394 prep in,reported
R6898 T9396 T9398 amod other,types
R6899 T9397 T9398 compound cell,types
R6900 T9398 T9395 pobj types,in
R6901 T9399 T9401 nmod [,]
R6902 T9400 T9401 nummod 31,]
R6903 T9401 T9394 dobj ],reported
R6904 T9402 T9401 punct ",",]
R6905 T9403 T9401 cc and,]
R6906 T9404 T9405 amod detectable,after
R6907 T9405 T9394 prep after,reported
R6908 T9406 T9407 nummod 8,hrs
R6909 T9407 T9405 pobj hrs,after
R6910 T9408 T9407 prep of,hrs
R6911 T9409 T9410 compound LPS,treatment
R6912 T9410 T9408 pobj treatment,of
R6913 T9411 T9413 punct (,1
R6914 T9412 T9413 nmod Fig.,1
R6915 T9413 T9407 dep 1,hrs
R6916 T9414 T9413 punct ),1
R6917 T9415 T9390 punct .,induced
R16266 T22573 T22574 compound LPS,induction
R16267 T22574 T22580 nmod induction,expression
R16268 T22575 T22574 prep of,induction
R16269 T22576 T22577 compound SerpinB2,mRNA
R16270 T22577 T22575 pobj mRNA,of
R16271 T22578 T22577 cc and,mRNA
R16272 T22579 T22580 compound protein,expression
R16273 T22580 T22580 ROOT expression,expression
R16274 T22581 T22580 prep in,expression
R16275 T22582 T22584 amod murine,cells
R16276 T22583 T22584 compound macrophage,cells
R16277 T22584 T22581 pobj cells,in
R16278 T22585 T22580 punct .,expression
R16279 T22586 T22588 nummod RAW264,macrophages
R16280 T22587 T22588 nummod .7,macrophages
R16281 T22588 T22590 nsubjpass macrophages,treated
R16282 T22589 T22590 auxpass were,treated
R16283 T22590 T22590 ROOT treated,treated
R16284 T22591 T22590 prep for,treated
R16285 T22592 T22594 det the,times
R16286 T22593 T22594 amod indicated,times
R16287 T22594 T22591 pobj times,for
R16288 T22595 T22590 prep with,treated
R16289 T22596 T22598 nummod 100,LPS
R16290 T22597 T22598 amod ng/ml,LPS
R16291 T22598 T22595 pobj LPS,with
R16292 T22599 T22590 punct .,treated
R16293 T22600 T22604 punct (,analysis
R16294 T22601 T22604 det A,analysis
R16295 T22602 T22603 punct ),qPCR
R16296 T22603 T22604 compound qPCR,analysis
R16297 T22604 T22604 ROOT analysis,analysis
R16298 T22605 T22604 prep of,analysis
R16299 T22606 T22609 amod murine,levels
R16300 T22607 T22608 compound SerpinB2,mRNA
R16301 T22608 T22609 compound mRNA,levels
R16302 T22609 T22605 pobj levels,of
R16303 T22610 T22604 punct ",",analysis
R16304 T22611 T22604 amod relative,analysis
R16305 T22612 T22611 prep to,relative
R16306 T22613 T22612 pobj β-actin,to
R16307 T22614 T22604 punct .,analysis
R16308 T22615 T22616 det The,plot
R16309 T22616 T22617 nsubj plot,is
R16310 T22617 T22617 ROOT is,is
R16311 T22618 T22617 attr representative,is
R16312 T22619 T22618 prep of,representative
R16313 T22620 T22621 advmod at,least
R16314 T22621 T22622 advmod least,two
R16315 T22622 T22624 nummod two,experiments
R16316 T22623 T22624 amod independent,experiments
R16317 T22624 T22619 pobj experiments,of
R16318 T22625 T22624 acl performed,experiments
R16319 T22626 T22625 prep in,performed
R16320 T22627 T22626 pobj triplicate,in
R16321 T22628 T22617 punct .,is
R16322 T22629 T22633 punct (,analysis
R16323 T22630 T22633 nmod B,analysis
R16324 T22631 T22630 punct ),B
R16325 T22632 T22633 compound Immunoblot,analysis
R16326 T22633 T22641 nsubj analysis,lysates
R16327 T22634 T22633 prep of,analysis
R16328 T22635 T22637 nummod SerpinB2,expression
R16329 T22636 T22637 compound protein,expression
R16330 T22637 T22634 pobj expression,of
R16331 T22638 T22637 prep in,expression
R16332 T22639 T22640 amod whole,cell
R16333 T22640 T22641 compound cell,lysates
R16334 T22641 T22641 ROOT lysates,lysates
R16335 T22642 T22641 punct .,lysates
R16336 T22643 T22645 nsubjpass Blot,reprobed
R16337 T22644 T22645 auxpass was,reprobed
R16338 T22645 T22645 ROOT reprobed,reprobed
R16339 T22646 T22645 prep for,reprobed
R16340 T22647 T22646 pobj GAPDH,for
R16341 T22648 T22645 prep as,reprobed
R16342 T22649 T22651 det a,control
R16343 T22650 T22651 compound loading,control
R16344 T22651 T22648 pobj control,as
R16345 T22652 T22645 punct .,reprobed

2_test

Id Subject Object Predicate Lexical cue
23472114-11001915-87899176 393-395 11001915 denotes 32
T57168 393-395 11001915 denotes 32

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T22492 1162-1169 NN denotes control
T22491 1154-1161 NN denotes loading
T22490 1152-1153 DT denotes a
T22489 1149-1151 IN denotes as
T22488 1143-1148 NN denotes GAPDH
T22487 1139-1142 IN denotes for
T22486 1130-1138 VB denotes reprobed
T22485 1126-1129 VB denotes was
T22484 1121-1125 NN denotes Blot
T22483 1112-1119 NN denotes lysates
T22482 1107-1111 NN denotes cell
T22481 1101-1106 JJ denotes whole
T22480 1098-1100 IN denotes in
T22479 1087-1097 NN denotes expression
T22478 1079-1086 NN denotes protein
T22477 1070-1078 NN denotes SerpinB2
T22476 1067-1069 IN denotes of
T22475 1058-1066 NN denotes analysis
T22474 1047-1057 NN denotes Immunoblot
T22473 1045-1046 -RRB- denotes )
T22472 1044-1045 NN denotes B
T22471 1043-1044 -LRB- denotes (
T22470 1031-1042 FW denotes triplicate.
T22469 1028-1030 IN denotes in
T22468 1018-1027 VB denotes performed
T22467 1006-1017 NN denotes experiments
T22466 994-1005 JJ denotes independent
T22465 990-993 CD denotes two
T22464 984-989 JJ denotes least
T22463 981-983 IN denotes at
T22462 978-980 IN denotes of
T22461 963-977 JJ denotes representative
T22460 960-962 VB denotes is
T22459 955-959 NN denotes plot
T22458 951-954 DT denotes The
T22457 942-949 NN denotes β-actin
T22456 939-941 TO denotes to
T22455 930-938 JJ denotes relative
T22454 928-929 -COMMA- denotes ,
T22453 922-928 NN denotes levels
T22452 917-921 NN denotes mRNA
T22451 908-916 NN denotes SerpinB2
T22450 901-907 JJ denotes murine
T22449 898-900 IN denotes of
T22448 889-897 NN denotes analysis
T22447 884-888 NN denotes qPCR
T22446 882-883 -RRB- denotes )
T22445 881-882 NN denotes A
T22444 880-881 -LRB- denotes (
T22443 875-879 NN denotes LPS.
T22442 869-874 NN denotes ng/ml
T22441 865-868 CD denotes 100
T22440 860-864 IN denotes with
T22439 854-859 NN denotes times
T22438 844-853 VB denotes indicated
T22437 840-843 DT denotes the
T22436 836-839 IN denotes for
T22435 828-835 VB denotes treated
T22434 823-827 VB denotes were
T22433 811-822 NN denotes macrophages
T22432 802-810 NN denotes RAW264.7
T22431 795-800 NN denotes cells
T22430 784-794 NN denotes macrophage
T22429 777-783 JJ denotes murine
T22428 774-776 IN denotes in
T22427 763-773 NN denotes expression
T22426 755-762 NN denotes protein
T22425 751-754 CC denotes and
T22424 746-750 NN denotes mRNA
T22423 737-745 NN denotes SerpinB2
T22422 734-736 IN denotes of
T22421 724-733 NN denotes induction
T22420 720-723 NN denotes LPS
T9180 673-674 -RRB- denotes )
T9179 672-673 CD denotes 1
T9178 667-671 NN denotes Fig.
T9177 666-667 -LRB- denotes (
T9176 656-665 NN denotes treatment
T9175 652-655 NN denotes LPS
T9174 649-651 IN denotes of
T9173 645-648 NN denotes hrs
T9172 643-644 CD denotes 8
T9171 637-642 IN denotes after
T9170 626-636 JJ denotes detectable
T9169 622-625 CC denotes and
T9168 620-621 -COMMA- denotes ,
T9167 619-620 -RRB- denotes ]
T9166 617-619 CD denotes 31
T9165 616-617 -LRB- denotes [
T9164 610-615 NN denotes types
T9163 605-609 NN denotes cell
T9162 599-604 JJ denotes other
T9161 596-598 IN denotes in
T9160 587-595 VB denotes reported
T9159 582-586 VB denotes been
T9158 578-581 VB denotes has
T9157 575-577 IN denotes as
T9156 567-574 VB denotes induced
T9155 562-566 RB denotes also
T9154 558-561 VB denotes was
T9153 547-557 NN denotes expression
T9152 539-546 NN denotes protein
T9151 530-538 NN denotes SerpinB2
T9150 527-528 -RRB- denotes ]
T9149 525-527 CD denotes 44
T9148 524-525 -LRB- denotes [
T9147 523-524 NN denotes –
T9146 522-523 -RRB- denotes ]
T9145 520-522 CD denotes 42
T9144 519-520 -LRB- denotes [
T9143 517-518 -COLON- denotes ;
T9142 516-517 -RRB- denotes ]
T9141 514-516 CD denotes 29
T9140 513-514 -LRB- denotes [
T9139 511-512 -COLON- denotes ;
T9138 510-511 -RRB- denotes ]
T9137 509-510 CD denotes 5
T9136 508-509 -LRB- denotes [
T9135 503-507 NN denotes mRNA
T9134 499-502 DT denotes the
T9133 496-498 IN denotes of
T9132 482-495 NN denotes stabilization
T9131 478-481 CC denotes and
T9130 464-477 NN denotes transcription
T9129 459-463 NN denotes gene
T9128 456-458 IN denotes in
T9127 447-455 NN denotes increase
T9126 444-446 DT denotes an
T9125 439-443 CC denotes both
T9124 430-438 VB denotes involves
T9123 419-429 NN denotes expression
T9122 410-418 NN denotes SerpinB2
T9121 398-409 JJ denotes LPS-induced
T9120 395-396 -RRB- denotes ]
T9119 393-395 CD denotes 32
T9118 392-393 -LRB- denotes [
T9117 390-391 -COLON- denotes ;
T9116 389-390 -RRB- denotes ]
T9115 388-389 CD denotes 4
T9114 387-388 -LRB- denotes [
T9113 381-386 NN denotes cells
T9112 369-380 JJ denotes mononuclear
T9111 363-368 NN denotes blood
T9110 352-362 JJ denotes peripheral
T9109 346-351 JJ denotes human
T9108 342-345 CC denotes and
T9107 330-341 NN denotes macrophages
T9106 319-329 JJ denotes peritoneal
T9105 312-318 JJ denotes murine
T9104 309-311 IN denotes in
T9103 298-308 RB denotes previously
T9102 289-297 VB denotes reported
T9101 284-288 VB denotes been
T9100 280-283 VB denotes has
T9099 269-279 NN denotes expression
T9098 264-268 NN denotes mRNA
T9097 255-263 NN denotes SerpinB2
T9096 241-254 JJ denotes LPS-inducible
T9095 238-240 IN denotes of
T9094 228-237 NN denotes induction
T9093 221-227 JJ denotes strong
T9092 213-220 JJ denotes similar
T9091 211-212 DT denotes A
T9090 208-209 -RRB- denotes )
T9089 206-208 NN denotes 1A
T9088 201-205 NNP denotes Fig.
T9087 200-201 -LRB- denotes (
T9086 196-199 NN denotes hrs
T9085 193-195 CD denotes 24
T9084 190-192 IN denotes at
T9083 183-189 NN denotes levels
T9082 175-182 JJ denotes maximal
T9081 166-174 VB denotes reaching
T9080 164-165 -COMMA- denotes ,
T9079 155-164 NN denotes challenge
T9078 151-154 NN denotes LPS
T9077 141-150 VB denotes following
T9076 137-140 NN denotes min
T9075 134-136 CD denotes 30
T9074 131-133 IN denotes as
T9073 125-130 RB denotes early
T9072 122-124 RB denotes as
T9071 111-121 JJ denotes detectable
T9070 107-110 VB denotes was
T9069 102-106 NN denotes mRNA
T9068 93-101 NN denotes SerpinB2
T9067 91-92 -COMMA- denotes ,
T9066 88-91 NN denotes LPS
T9065 85-87 TO denotes to
T9064 77-84 VB denotes exposed
T9063 72-76 VB denotes were
T9062 60-71 NN denotes macrophages
T9061 51-59 NN denotes RAW264.7
T9060 46-50 WRB denotes When
T9059 42-45 NN denotes LPS
T9058 39-41 TO denotes to
T9057 28-38 JJ denotes Responsive
T9056 21-27 RB denotes Highly
T9055 18-20 VB denotes is
T9054 13-17 NN denotes Gene
T9053 4-12 NN denotes SerpinB2
T9052 0-3 DT denotes The
R6609 T9054 T9052 arg1Of Gene,The
R6610 T9054 T9053 arg1Of Gene,SerpinB2
R6611 T9054 T9055 arg1Of Gene,is
R6612 T9054 T9057 arg1Of Gene,Responsive
R6613 T9057 T9055 arg2Of Responsive,is
R6614 T9057 T9056 arg1Of Responsive,Highly
R6615 T9057 T9058 arg1Of Responsive,to
R6616 T9059 T9058 arg2Of LPS,to
R6617 T9062 T9061 arg1Of macrophages,RAW264.7
R6618 T9062 T9063 arg1Of macrophages,were
R6619 T9062 T9064 arg2Of macrophages,exposed
R6620 T9064 T9060 arg2Of exposed,When
R6621 T9064 T9063 arg2Of exposed,were
R6622 T9064 T9065 arg1Of exposed,to
R6623 T9066 T9065 arg2Of LPS,to
R6624 T9069 T9068 arg1Of mRNA,SerpinB2
R6625 T9069 T9070 arg1Of mRNA,was
R6626 T9069 T9071 arg1Of mRNA,detectable
R6627 T9070 T9060 arg1Of was,When
R6628 T9070 T9067 arg1Of was,","
R6629 T9070 T9077 arg1Of was,following
R6630 T9070 T9080 arg1Of was,","
R6631 T9071 T9070 arg2Of detectable,was
R6632 T9071 T9073 arg1Of detectable,early
R6633 T9073 T9072 arg1Of early,as
R6634 T9073 T9074 arg1Of early,as
R6635 T9076 T9074 arg2Of min,as
R6636 T9076 T9075 arg1Of min,30
R6637 T9079 T9077 arg2Of challenge,following
R6638 T9079 T9078 arg1Of challenge,LPS
R6639 T9081 T9070 arg3Of reaching,was
R6640 T9081 T9084 arg1Of reaching,at
R6641 T9083 T9081 arg2Of levels,reaching
R6642 T9083 T9082 arg1Of levels,maximal
R6643 T9086 T9084 arg2Of hrs,at
R6644 T9086 T9085 arg1Of hrs,24
R6645 T9086 T9087 arg1Of hrs,(
R6646 T9089 T9087 arg2Of 1A,(
R6647 T9089 T9088 arg1Of 1A,Fig.
R6648 T9090 T9087 arg3Of ),(
R6649 T9094 T9091 arg1Of induction,A
R6650 T9094 T9092 arg1Of induction,similar
R6651 T9094 T9093 arg1Of induction,strong
R6652 T9094 T9095 arg1Of induction,of
R6653 T9094 T9100 arg1Of induction,has
R6654 T9094 T9101 arg1Of induction,been
R6655 T9094 T9102 arg2Of induction,reported
R6656 T9099 T9095 arg2Of expression,of
R6657 T9099 T9096 arg1Of expression,LPS-inducible
R6658 T9099 T9097 arg1Of expression,SerpinB2
R6659 T9099 T9098 arg1Of expression,mRNA
R6660 T9102 T9100 arg2Of reported,has
R6661 T9102 T9101 arg2Of reported,been
R6662 T9102 T9103 arg1Of reported,previously
R6663 T9102 T9104 arg1Of reported,in
R6664 T9102 T9114 arg1Of reported,[
R6665 T9102 T9117 arg1Of reported,;
R6666 T9102 T9118 arg1Of reported,[
R6667 T9107 T9105 arg1Of macrophages,murine
R6668 T9107 T9106 arg1Of macrophages,peritoneal
R6669 T9107 T9108 arg1Of macrophages,and
R6670 T9108 T9104 arg2Of and,in
R6671 T9113 T9108 arg2Of cells,and
R6672 T9113 T9109 arg1Of cells,human
R6673 T9113 T9110 arg1Of cells,peripheral
R6674 T9113 T9111 arg1Of cells,blood
R6675 T9113 T9112 arg1Of cells,mononuclear
R6676 T9115 T9114 arg2Of 4,[
R6677 T9116 T9114 arg3Of ],[
R6678 T9119 T9118 arg2Of 32,[
R6679 T9120 T9118 arg3Of ],[
R6680 T9123 T9121 arg1Of expression,LPS-induced
R6681 T9123 T9122 arg1Of expression,SerpinB2
R6682 T9123 T9124 arg1Of expression,involves
R6683 T9124 T9148 arg1Of involves,[
R6684 T9127 T9124 arg2Of increase,involves
R6685 T9127 T9125 arg1Of increase,both
R6686 T9127 T9126 arg1Of increase,an
R6687 T9127 T9128 arg1Of increase,in
R6688 T9127 T9139 arg1Of increase,;
R6689 T9127 T9140 arg1Of increase,[
R6690 T9127 T9143 arg1Of increase,;
R6691 T9130 T9131 arg1Of transcription,and
R6692 T9131 T9128 arg2Of and,in
R6693 T9131 T9129 arg1Of and,gene
R6694 T9131 T9133 arg1Of and,of
R6695 T9131 T9136 arg1Of and,[
R6696 T9132 T9131 arg2Of stabilization,and
R6697 T9135 T9133 arg2Of mRNA,of
R6698 T9135 T9134 arg1Of mRNA,the
R6699 T9137 T9136 arg2Of 5,[
R6700 T9138 T9136 arg3Of ],[
R6701 T9141 T9140 arg2Of 29,[
R6702 T9142 T9140 arg3Of ],[
R6703 T9145 T9144 arg2Of 42,[
R6704 T9146 T9144 arg3Of ],[
R6705 T9147 T9143 arg2Of –,;
R6706 T9147 T9144 arg1Of –,[
R6707 T9149 T9148 arg2Of 44,[
R6708 T9150 T9148 arg3Of ],[
R6709 T9153 T9151 arg1Of expression,SerpinB2
R6710 T9153 T9152 arg1Of expression,protein
R6711 T9153 T9154 arg1Of expression,was
R6712 T9153 T9156 arg2Of expression,induced
R6713 T9153 T9170 arg1Of expression,detectable
R6714 T9156 T9157 arg1Of induced,as
R6715 T9156 T9169 arg1Of induced,and
R6716 T9160 T9157 arg2Of reported,as
R6717 T9160 T9158 arg2Of reported,has
R6718 T9160 T9159 arg2Of reported,been
R6719 T9160 T9161 arg1Of reported,in
R6720 T9164 T9161 arg2Of types,in
R6721 T9164 T9162 arg1Of types,other
R6722 T9164 T9163 arg1Of types,cell
R6723 T9164 T9165 arg1Of types,[
R6724 T9166 T9165 arg2Of 31,[
R6725 T9167 T9165 arg3Of ],[
R6726 T9169 T9154 arg2Of and,was
R6727 T9169 T9155 arg1Of and,also
R6728 T9169 T9168 arg1Of and,","
R6729 T9169 T9171 arg1Of and,after
R6730 T9170 T9169 arg2Of detectable,and
R6731 T9173 T9171 arg2Of hrs,after
R6732 T9173 T9172 arg1Of hrs,8
R6733 T9173 T9174 arg1Of hrs,of
R6734 T9176 T9174 arg2Of treatment,of
R6735 T9176 T9175 arg1Of treatment,LPS
R6736 T9176 T9177 arg1Of treatment,(
R6737 T9178 T9177 arg2Of Fig.,(
R6738 T9178 T9179 arg1Of Fig.,1
R6739 T9180 T9177 arg3Of ),(
R16169 T22421 T22420 arg1Of induction,LPS
R16170 T22421 T22422 arg1Of induction,of
R16171 T22421 T22428 arg1Of induction,in
R16172 T22424 T22423 arg1Of mRNA,SerpinB2
R16173 T22424 T22425 arg1Of mRNA,and
R16174 T22425 T22422 arg2Of and,of
R16175 T22427 T22425 arg2Of expression,and
R16176 T22427 T22426 arg1Of expression,protein
R16177 T22431 T22428 arg2Of cells,in
R16178 T22431 T22429 arg1Of cells,murine
R16179 T22431 T22430 arg1Of cells,macrophage
R16180 T22433 T22432 arg1Of macrophages,RAW264.7
R16181 T22433 T22434 arg1Of macrophages,were
R16182 T22433 T22435 arg2Of macrophages,treated
R16183 T22435 T22434 arg2Of treated,were
R16184 T22435 T22436 arg1Of treated,for
R16185 T22438 T22439 arg1Of indicated,times
R16186 T22439 T22440 arg1Of times,with
R16187 T22441 T22442 arg1Of 100,ng/ml
R16188 T22443 T22440 arg2Of LPS.,with
R16189 T22443 T22441 arg1Of LPS.,100
R16190 T22443 T22444 arg1Of LPS.,(
R16191 T22445 T22444 arg2Of A,(
R16192 T22446 T22444 arg3Of ),(
R16193 T22448 T22436 arg2Of analysis,for
R16194 T22448 T22437 arg1Of analysis,the
R16195 T22448 T22438 arg2Of analysis,indicated
R16196 T22448 T22447 arg1Of analysis,qPCR
R16197 T22448 T22449 arg1Of analysis,of
R16198 T22453 T22449 arg2Of levels,of
R16199 T22453 T22450 arg1Of levels,murine
R16200 T22453 T22451 arg1Of levels,SerpinB2
R16201 T22453 T22452 arg1Of levels,mRNA
R16202 T22453 T22454 arg1Of levels,","
R16203 T22453 T22455 arg1Of levels,relative
R16204 T22455 T22456 arg1Of relative,to
R16205 T22457 T22456 arg2Of β-actin,to
R16206 T22459 T22458 arg1Of plot,The
R16207 T22459 T22460 arg1Of plot,is
R16208 T22459 T22461 arg1Of plot,representative
R16209 T22461 T22460 arg2Of representative,is
R16210 T22461 T22462 arg1Of representative,of
R16211 T22465 T22463 arg1Of two,at
R16212 T22465 T22464 arg1Of two,least
R16213 T22467 T22462 arg2Of experiments,of
R16214 T22467 T22465 arg1Of experiments,two
R16215 T22467 T22466 arg1Of experiments,independent
R16216 T22467 T22468 arg2Of experiments,performed
R16217 T22468 T22469 arg1Of performed,in
R16218 T22472 T22471 arg2Of B,(
R16219 T22473 T22471 arg3Of ),(
R16220 T22475 T22469 arg2Of analysis,in
R16221 T22475 T22470 arg1Of analysis,triplicate.
R16222 T22475 T22471 arg1Of analysis,(
R16223 T22475 T22474 arg1Of analysis,Immunoblot
R16224 T22475 T22476 arg1Of analysis,of
R16225 T22479 T22476 arg2Of expression,of
R16226 T22479 T22477 arg1Of expression,SerpinB2
R16227 T22479 T22478 arg1Of expression,protein
R16228 T22479 T22480 arg1Of expression,in
R16229 T22483 T22480 arg2Of lysates,in
R16230 T22483 T22481 arg1Of lysates,whole
R16231 T22483 T22482 arg1Of lysates,cell
R16232 T22484 T22485 arg1Of Blot,was
R16233 T22484 T22486 arg2Of Blot,reprobed
R16234 T22486 T22485 arg2Of reprobed,was
R16235 T22486 T22487 arg1Of reprobed,for
R16236 T22486 T22489 arg1Of reprobed,as
R16237 T22488 T22487 arg2Of GAPDH,for
R16238 T22492 T22489 arg2Of control,as
R16239 T22492 T22490 arg1Of control,a
R16240 T22492 T22491 arg1Of control,loading

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9037 530-538 Protein denotes SerpinB2
T9036 410-418 Protein denotes SerpinB2
T9035 255-263 Protein denotes SerpinB2
T9034 93-101 Protein denotes SerpinB2
T9033 4-12 Protein denotes SerpinB2
T22412 1143-1148 Protein denotes GAPDH
T22411 1070-1078 Protein denotes SerpinB2
T22410 942-949 Protein denotes β-actin
T22409 908-916 Protein denotes SerpinB2
T22408 737-745 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22511 1143-1148 http://www.uniprot.org/uniprot/P04406 denotes GAPDH
T22510 942-949 http://www.uniprot.org/uniprot/P60709 denotes β-actin
T22509 1070-1078 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T22508 908-916 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T22507 737-745 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T9196 255-263 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T9195 93-101 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T9194 4-12 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T9198 530-538 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T9197 410-418 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

UBERON-AE

Id Subject Object Predicate Lexical cue
T9012 363-368 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GO-BP

Id Subject Object Predicate Lexical cue
T9039 482-507 http://purl.obolibrary.org/obo/GO_0048255 denotes stabilization of the mRNA
T9038 464-477 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-CC

Id Subject Object Predicate Lexical cue
T22414 1107-1111 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T22413 795-800 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9041 605-609 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T9040 381-386 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T9017 530-675 Sentence denotes SerpinB2 protein expression was also induced as has been reported in other cell types [31], and detectable after 8 hrs of LPS treatment (Fig. 1).
T9016 398-529 Sentence denotes LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44].
T9015 211-397 Sentence denotes A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32].
T9014 46-210 Sentence denotes When RAW264.7 macrophages were exposed to LPS, SerpinB2 mRNA was detectable as early as 30 min following LPS challenge, reaching maximal levels at 24 hrs (Fig. 1A).
T9013 0-45 Sentence denotes The SerpinB2 Gene is Highly Responsive to LPS
T22399 1121-1170 Sentence denotes Blot was reprobed for GAPDH as a loading control.
T22398 951-1120 Sentence denotes The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates.
T22397 802-950 Sentence denotes RAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin.
T22396 720-801 Sentence denotes LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.
T113 0-45 Sentence denotes The SerpinB2 Gene is Highly Responsive to LPS
T114 46-210 Sentence denotes When RAW264.7 macrophages were exposed to LPS, SerpinB2 mRNA was detectable as early as 30 min following LPS challenge, reaching maximal levels at 24 hrs (Fig. 1A).
T115 211-397 Sentence denotes A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32].
T116 398-529 Sentence denotes LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44].
T117 530-675 Sentence denotes SerpinB2 protein expression was also induced as has been reported in other cell types [31], and detectable after 8 hrs of LPS treatment (Fig. 1).
T118 676-801 Sentence denotes 10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.
T119 802-950 Sentence denotes RAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin.
T120 951-1120 Sentence denotes The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates.
T121 1121-1170 Sentence denotes Blot was reprobed for GAPDH as a loading control.

simple1

Id Subject Object Predicate Lexical cue
T22419 1143-1148 Protein denotes GAPDH
T22418 1070-1078 Protein denotes SerpinB2
T22417 942-949 Protein denotes β-actin
T22416 908-916 Protein denotes SerpinB2
T22415 737-745 Protein denotes SerpinB2
T9051 530-538 Protein denotes SerpinB2
T9050 410-418 Protein denotes SerpinB2
T9049 255-263 Protein denotes SerpinB2
T9048 93-101 Protein denotes SerpinB2
T9047 4-12 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T22506 1087-1097 Gene_expression denotes expression
T22505 922-928 Transcription denotes levels
T22504 763-773 Gene_expression denotes expression
T22503 724-733 Positive_regulation denotes induction
T22502 1143-1148 Protein denotes GAPDH
T22501 1070-1078 Protein denotes SerpinB2
T22500 942-949 Protein denotes β-actin
T22499 908-916 Protein denotes SerpinB2
T22498 737-745 Protein denotes SerpinB2
T9193 567-574 Positive_regulation denotes induced
T9192 547-557 Gene_expression denotes expression
T9191 398-409 Positive_regulation denotes LPS-induced
T9190 419-429 Gene_expression denotes expression
T9189 228-237 Positive_regulation denotes induction
T9188 269-279 Transcription denotes expression
T9187 241-254 Positive_regulation denotes LPS-inducible
T9186 111-121 Transcription denotes detectable
T9185 530-538 Protein denotes SerpinB2
T9184 410-418 Protein denotes SerpinB2
T9183 255-263 Protein denotes SerpinB2
T9182 93-101 Protein denotes SerpinB2
T9181 4-12 Protein denotes SerpinB2
R6740 T9182 T9186 themeOf SerpinB2,detectable
R6741 T9183 T9188 themeOf SerpinB2,expression
R6742 T9184 T9190 themeOf SerpinB2,expression
R6743 T9185 T9192 themeOf SerpinB2,expression
R6744 T9188 T9189 themeOf expression,induction
R6745 T9188 T9187 themeOf expression,LPS-inducible
R6746 T9190 T9191 themeOf expression,LPS-induced
R6747 T9192 T9193 themeOf expression,induced
R16241 T22498 T22503 themeOf SerpinB2,induction
R16242 T22498 T22504 themeOf SerpinB2,expression
R16243 T22499 T22505 themeOf SerpinB2,levels
R16244 T22501 T22506 themeOf SerpinB2,expression
R16245 T22504 T22503 themeOf expression,induction

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T22534 1087-1097 Gene_expression denotes expression
T22533 724-733 Positive_regulation denotes induction
T22532 763-773 Gene_expression denotes expression
T22531 1143-1148 Protein denotes GAPDH
T22530 1070-1078 Protein denotes SerpinB2
T22529 942-949 Protein denotes β-actin
T22528 908-916 Protein denotes SerpinB2
T22527 737-745 Protein denotes SerpinB2
T9232 567-574 Positive_regulation denotes induced
T9231 547-557 Gene_expression denotes expression
T9230 398-409 Positive_regulation denotes LPS-induced
T9229 419-429 Gene_expression denotes expression
T9228 269-279 Transcription denotes expression
T9227 241-254 Positive_regulation denotes LPS-inducible
T9226 228-237 Positive_regulation denotes induction
T9225 530-538 Protein denotes SerpinB2
T9224 410-418 Protein denotes SerpinB2
T9223 255-263 Protein denotes SerpinB2
T9222 93-101 Protein denotes SerpinB2
T9221 4-12 Protein denotes SerpinB2
R6760 T9223 T9228 themeOf SerpinB2,expression
R6761 T9224 T9229 themeOf SerpinB2,expression
R6762 T9225 T9231 themeOf SerpinB2,expression
R6763 T9228 T9226 themeOf expression,induction
R6764 T9228 T9227 themeOf expression,LPS-inducible
R6765 T9229 T9230 themeOf expression,LPS-induced
R6766 T9231 T9232 themeOf expression,induced
R16252 T22527 T22533 themeOf SerpinB2,induction
R16253 T22527 T22532 themeOf SerpinB2,expression
R16254 T22530 T22534 themeOf SerpinB2,expression
R16255 T22532 T22533 themeOf expression,induction

DLUT931

Id Subject Object Predicate Lexical cue
T22519 1087-1097 Gene_expression denotes expression
T22518 763-773 Gene_expression denotes expression
T22517 724-733 Positive_regulation denotes induction
T22516 1143-1148 Protein denotes GAPDH
T22515 1070-1078 Protein denotes SerpinB2
T22514 942-949 Protein denotes β-actin
T22513 908-916 Protein denotes SerpinB2
T22512 737-745 Protein denotes SerpinB2
T9212 567-574 Positive_regulation denotes induced
T9211 547-557 Gene_expression denotes expression
T9210 398-409 Positive_regulation denotes LPS-induced
T9209 419-429 Gene_expression denotes expression
T9208 241-254 Positive_regulation denotes LPS-inducible
T9207 228-237 Positive_regulation denotes induction
T9206 269-279 Transcription denotes expression
T9205 102-106 Transcription denotes mRNA
T9204 28-38 Positive_regulation denotes Responsive
T9203 530-538 Protein denotes SerpinB2
T9202 410-418 Protein denotes SerpinB2
T9201 255-263 Protein denotes SerpinB2
T9200 93-101 Protein denotes SerpinB2
T9199 4-12 Protein denotes SerpinB2
R6748 T9199 T9204 themeOf SerpinB2,Responsive
R6749 T9200 T9205 themeOf SerpinB2,mRNA
R6750 T9201 T9206 themeOf SerpinB2,expression
R6751 T9202 T9209 themeOf SerpinB2,expression
R6752 T9203 T9211 themeOf SerpinB2,expression
R6753 T9206 T9207 themeOf expression,induction
R6754 T9206 T9208 themeOf expression,LPS-inducible
R6755 T9209 T9210 themeOf expression,LPS-induced
R6756 T9211 T9212 themeOf expression,induced
R16246 T22512 T22517 themeOf SerpinB2,induction
R16247 T22512 T22518 themeOf SerpinB2,expression
R16248 T22515 T22519 themeOf SerpinB2,expression
R16249 T22518 T22517 themeOf expression,induction

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T22572 755-773 Gene_expression denotes protein expression
T22571 1058-1119 Gene_expression denotes analysis of SerpinB2 protein expression in whole cell lysates
T22570 1152-1169 Regulation denotes a loading control
T22569 737-750 Protein denotes SerpinB2 mRNA
T22568 784-794 Entity denotes macrophage
T22567 802-822 Entity denotes RAW264.7 macrophages
T22566 884-888 Protein denotes qPCR
T22565 869-878 Entity denotes ng/ml LPS
T22564 777-800 Entity denotes murine macrophage cells
T22563 1143-1148 Protein denotes GAPDH
T22562 917-921 Protein denotes mRNA
T22561 898-929 Protein denotes of murine SerpinB2 mRNA levels,
T22560 1070-1078 Protein denotes SerpinB2
T22559 720-723 Entity denotes LPS
T22558 755-762 Protein denotes protein
T22557 942-949 Protein denotes β-actin
T22556 737-745 Protein denotes SerpinB2
T22555 1070-1086 Protein denotes SerpinB2 protein
T9282 444-477 Positive_regulation denotes an increase in gene transcription
T9281 238-279 Gene_expression denotes of LPS-inducible SerpinB2 mRNA expression
T9280 398-429 Gene_expression denotes LPS-induced SerpinB2 expression
T9279 456-477 Transcription denotes in gene transcription
T9278 42-45 Entity denotes LPS
T9277 151-154 Entity denotes LPS
T9276 346-386 Entity denotes human peripheral blood mononuclear cells
T9275 410-418 Protein denotes SerpinB2
T9274 496-507 Protein denotes of the mRNA
T9273 530-538 Protein denotes SerpinB2
T9272 398-409 Entity denotes LPS-induced
T9271 102-106 Protein denotes mRNA
T9270 0-17 Protein denotes The SerpinB2 Gene
T9269 459-463 Protein denotes gene
T9268 599-621 Entity denotes other cell types [31],
T9267 530-577 Protein denotes SerpinB2 protein expression was also induced as
T9266 652-655 Entity denotes LPS
T9265 312-341 Entity denotes murine peritoneal macrophages
T9264 626-674 Protein denotes detectable after 8 hrs of LPS treatment (Fig. 1)
T9263 193-209 Protein denotes 24 hrs (Fig. 1A)
T9262 93-136 Protein denotes SerpinB2 mRNA was detectable as early as 30
T9261 255-268 Protein denotes SerpinB2 mRNA
T9260 51-71 Entity denotes RAW264.7 macrophages
T9259 88-92 Entity denotes LPS,
T9258 4-12 Protein denotes SerpinB2
T9257 255-263 Protein denotes SerpinB2
R6781 T9261 T9281 themeOf SerpinB2 mRNA,of LPS-inducible SerpinB2 mRNA expression
R6782 T9269 T9279 themeOf gene,in gene transcription
R6783 T9275 T9280 themeOf SerpinB2,LPS-induced SerpinB2 expression
R6784 T9279 T9282 themeOf in gene transcription,an increase in gene transcription
R16264 T22555 T22571 themeOf SerpinB2 protein,analysis of SerpinB2 protein expression in whole cell lysates
R16265 T22558 T22572 themeOf protein,protein expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T22544 1143-1148 Protein denotes GAPDH
T22543 1121-1125 Protein denotes Blot
T22542 1087-1097 Gene_expression denotes expression
T22541 1070-1086 Protein denotes SerpinB2 protein
T22540 942-949 Protein denotes β-actin
T22539 908-921 Protein denotes SerpinB2 mRNA
T22538 724-733 Positive_regulation denotes induction
T22537 763-773 Gene_expression denotes expression
T22536 724-733 Positive_regulation denotes induction
T22535 737-750 Protein denotes SerpinB2 mRNA
T9244 567-574 Positive_regulation denotes induced
T9243 547-557 Gene_expression denotes expression
T9242 530-546 Protein denotes SerpinB2 protein
T9241 398-409 Positive_regulation denotes LPS-induced
T9240 419-429 Gene_expression denotes expression
T9239 410-418 Protein denotes SerpinB2
T9238 228-237 Positive_regulation denotes induction
T9237 241-254 Positive_regulation denotes LPS-inducible
T9236 269-279 Gene_expression denotes expression
T9235 255-268 Protein denotes SerpinB2 mRNA
T9234 93-106 Protein denotes SerpinB2 mRNA
T9233 4-17 Protein denotes SerpinB2 Gene
R6767 T9235 T9236 themeOf SerpinB2 mRNA,expression
R6768 T9236 T9237 themeOf expression,LPS-inducible
R6769 T9237 T9238 themeOf LPS-inducible,induction
R6770 T9239 T9240 themeOf SerpinB2,expression
R6771 T9240 T9241 themeOf expression,LPS-induced
R6772 T9242 T9243 themeOf SerpinB2 protein,expression
R6773 T9243 T9244 themeOf expression,induced
R16256 T22535 T22536 themeOf SerpinB2 mRNA,induction
R16257 T22535 T22537 themeOf SerpinB2 mRNA,expression
R16258 T22537 T22538 themeOf expression,induction
R16259 T22541 T22542 themeOf SerpinB2 protein,expression

testone

Id Subject Object Predicate Lexical cue
T22382 1087-1097 Gene_expression denotes expression
T22381 763-773 Gene_expression denotes expression
T22380 724-733 Positive_regulation denotes induction
T22379 1143-1148 Protein denotes GAPDH
T22378 1070-1078 Protein denotes SerpinB2
T22377 942-949 Protein denotes β-actin
T22376 908-916 Protein denotes SerpinB2
T22375 737-745 Protein denotes SerpinB2
T8993 547-557 Gene_expression denotes expression
T8992 402-409 Positive_regulation denotes induced
T8991 264-279 Transcription denotes mRNA expression
T8990 245-254 Positive_regulation denotes inducible
T8989 228-237 Positive_regulation denotes induction
T8988 141-150 Positive_regulation denotes following
T8987 530-538 Protein denotes SerpinB2
T8986 410-418 Protein denotes SerpinB2
T8985 255-263 Protein denotes SerpinB2
T8984 93-101 Protein denotes SerpinB2
T8983 4-12 Protein denotes SerpinB2
R6588 T8985 T8991 themeOf SerpinB2,mRNA expression
R6589 T8987 T8993 themeOf SerpinB2,expression
R6590 T8991 T8990 themeOf mRNA expression,inducible
R6591 T8991 T8989 themeOf mRNA expression,induction
R16160 T22375 T22380 themeOf SerpinB2,induction
R16161 T22378 T22382 themeOf SerpinB2,expression
R16162 T22381 T22380 themeOf expression,induction

test3

Id Subject Object Predicate Lexical cue
T22395 1143-1148 Protein denotes GAPDH
T22394 1087-1097 Gene_expression denotes expression
T22393 1070-1078 Protein denotes SerpinB2
T22392 942-949 Protein denotes β-actin
T22391 908-916 Protein denotes SerpinB2
T22390 763-773 Gene_expression denotes expression
T22389 737-745 Protein denotes SerpinB2
T22388 724-733 Positive_regulation denotes induction
T22387 1143-1148 Protein denotes GAPDH
T22386 1070-1078 Protein denotes SerpinB2
T22385 942-949 Protein denotes β-actin
T22384 908-916 Protein denotes SerpinB2
T22383 737-745 Protein denotes SerpinB2
T9011 567-574 Positive_regulation denotes induced
T9010 547-557 Gene_expression denotes expression
T9009 530-538 Protein denotes SerpinB2
T9008 419-429 Gene_expression denotes expression
T9007 410-418 Protein denotes SerpinB2
T9006 402-409 Positive_regulation denotes induced
T9005 264-279 Transcription denotes mRNA expression
T9004 255-263 Protein denotes SerpinB2
T9003 245-254 Positive_regulation denotes inducible
T9002 228-237 Positive_regulation denotes induction
T9001 141-150 Positive_regulation denotes following
T9000 93-101 Protein denotes SerpinB2
T8999 4-12 Protein denotes SerpinB2
T8998 530-538 Protein denotes SerpinB2
T8997 410-418 Protein denotes SerpinB2
T8996 255-263 Protein denotes SerpinB2
T8995 93-101 Protein denotes SerpinB2
T8994 4-12 Protein denotes SerpinB2
R6592 T9004 T9005 themeOf SerpinB2,mRNA expression
R6593 T9005 T9003 themeOf mRNA expression,inducible
R6594 T9005 T9002 themeOf mRNA expression,induction
R6595 T9007 T9008 themeOf SerpinB2,expression
R6596 T9008 T9006 themeOf expression,induced
R6597 T9009 T9010 themeOf SerpinB2,expression
R6598 T9010 T9011 themeOf expression,induced
R16163 T22389 T22390 themeOf SerpinB2,expression
R16164 T22390 T22388 themeOf expression,induction
R16165 T22393 T22394 themeOf SerpinB2,expression