> top > docs > PMC:3589482 > spans > 16997-17232 > annotations

PMC:3589482 / 16997-17232 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8897 234-235 . denotes .
T8896 208-233 CD denotes TTCTTGGAAAGCTGGCACTGTGTG3
T8895 207-208 NN denotes ′
T8894 206-207 CD denotes 5
T8893 204-205 -RRB- denotes )
T8892 201-204 CD denotes +19
T8891 200-201 CD denotes /
T8890 199-200 CD denotes 5
T8889 198-199 FW denotes −
T8888 197-198 -LRB- denotes (
T8887 189-196 NN denotes reverse
T8886 187-188 : denotes ;
T8885 161-186 NNP denotes AAGACTCCCACAGATGGTGGCTGT3
T8884 160-161 CD denotes ′
T8883 159-160 CD denotes 5
T8882 157-158 -RRB- denotes )
T8881 154-157 CD denotes 315
T8880 153-154 NN denotes −
T8879 152-153 CD denotes /
T8878 149-152 CD denotes 338
T8877 148-149 FW denotes −
T8876 147-148 -LRB- denotes (
T8875 139-146 RB denotes forward
T8874 137-138 : denotes :
T8873 129-137 NN denotes promoter
T8872 120-128 JJ denotes proximal
T8871 111-119 NNP denotes SerpinB2
T8870 107-110 DT denotes the
T8869 103-106 IN denotes for
T8868 94-102 JJ denotes specific
T8867 86-93 NNS denotes primers
T8866 82-85 CC denotes and
T8865 75-81 NN denotes method
T8864 69-74 JJ denotes green
T8863 64-68 NNP denotes SYBR
T8862 60-63 DT denotes the
T8861 54-59 VBG denotes using
T8860 49-53 NNP denotes qPCR
T8859 46-48 IN denotes by
T8858 43-45 CC denotes or
T8857 39-42 NNP denotes PCR
T8856 21-38 JJ denotes semi-quantitative
T8855 18-20 IN denotes by
T8854 8-17 VBN denotes amplified
T8853 4-7 VBD denotes was
T8852 0-3 NNP denotes DNA
R6471 T8852 T8854 nsubjpass DNA,amplified
R6472 T8853 T8854 auxpass was,amplified
R6473 T8854 T8854 ROOT amplified,amplified
R6474 T8855 T8854 agent by,amplified
R6475 T8856 T8857 compound semi-quantitative,PCR
R6476 T8857 T8855 pobj PCR,by
R6477 T8858 T8855 cc or,by
R6478 T8859 T8855 conj by,by
R6479 T8860 T8859 pobj qPCR,by
R6480 T8861 T8854 advcl using,amplified
R6481 T8862 T8865 det the,method
R6482 T8863 T8865 nmod SYBR,method
R6483 T8864 T8865 amod green,method
R6484 T8865 T8861 dobj method,using
R6485 T8866 T8865 cc and,method
R6486 T8867 T8865 conj primers,method
R6487 T8868 T8861 oprd specific,using
R6488 T8869 T8868 prep for,specific
R6489 T8870 T8873 det the,promoter
R6490 T8871 T8873 nmod SerpinB2,promoter
R6491 T8872 T8873 amod proximal,promoter
R6492 T8873 T8869 pobj promoter,for
R6493 T8874 T8854 punct :,amplified
R6494 T8875 T8875 ROOT forward,forward
R6495 T8876 T8880 punct (,−
R6496 T8877 T8880 nmod −,−
R6497 T8878 T8880 nummod 338,−
R6498 T8879 T8880 nummod /,−
R6499 T8880 T8880 ROOT −,−
R6500 T8881 T8880 nummod 315,−
R6501 T8882 T8880 punct ),−
R6502 T8883 T8880 nummod 5,−
R6503 T8884 T8885 nummod ′,AAGACTCCCACAGATGGTGGCTGT3
R6504 T8885 T8880 appos AAGACTCCCACAGATGGTGGCTGT3,−
R6505 T8886 T8887 punct ;,reverse
R6506 T8887 T8895 nmod reverse,′
R6507 T8888 T8887 punct (,reverse
R6508 T8889 T8892 nmod −,+19
R6509 T8890 T8892 nummod 5,+19
R6510 T8891 T8892 punct /,+19
R6511 T8892 T8887 appos +19,reverse
R6512 T8893 T8887 punct ),reverse
R6513 T8894 T8895 nummod 5,′
R6514 T8895 T8880 appos ′,−
R6515 T8896 T8895 nummod TTCTTGGAAAGCTGGCACTGTGTG3,′
R6516 T8897 T8854 punct .,amplified

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8554 206-234 NN denotes 5′TTCTTGGAAAGCTGGCACTGTGTG3’
T8553 204-205 -RRB- denotes )
T8552 198-204 CD denotes −5/+19
T8551 197-198 -LRB- denotes (
T8550 189-196 JJ denotes reverse
T8549 187-188 -COLON- denotes ;
T8548 159-187 NN denotes 5′AAGACTCCCACAGATGGTGGCTGT3’
T8547 157-158 -RRB- denotes )
T8546 148-157 CD denotes −338/−315
T8545 147-148 -LRB- denotes (
T8544 139-146 RB denotes forward
T8543 137-138 -COLON- denotes :
T8542 129-137 NN denotes promoter
T8541 120-128 JJ denotes proximal
T8540 111-119 NN denotes SerpinB2
T8539 107-110 DT denotes the
T8538 103-106 IN denotes for
T8537 94-102 JJ denotes specific
T8536 86-93 NN denotes primers
T8535 82-85 CC denotes and
T8534 75-81 NN denotes method
T8533 69-74 JJ denotes green
T8532 64-68 NN denotes SYBR
T8531 60-63 DT denotes the
T8530 54-59 VB denotes using
T8529 49-53 NN denotes qPCR
T8528 46-48 IN denotes by
T8527 43-45 CC denotes or
T8526 39-42 NN denotes PCR
T8525 21-38 JJ denotes semi-quantitative
T8524 18-20 IN denotes by
T8523 8-17 VB denotes amplified
T8522 4-7 VB denotes was
T8521 0-3 NN denotes DNA
R6198 T8521 T8522 arg1Of DNA,was
R6199 T8521 T8523 arg2Of DNA,amplified
R6200 T8521 T8530 arg1Of DNA,using
R6201 T8523 T8522 arg2Of amplified,was
R6202 T8523 T8524 arg1Of amplified,by
R6203 T8523 T8528 arg1Of amplified,by
R6204 T8523 T8530 modOf amplified,using
R6205 T8524 T8527 arg1Of by,or
R6206 T8526 T8524 arg2Of PCR,by
R6207 T8526 T8525 arg1Of PCR,semi-quantitative
R6208 T8528 T8527 arg2Of by,or
R6209 T8529 T8528 arg2Of qPCR,by
R6210 T8534 T8535 arg1Of method,and
R6211 T8535 T8530 arg2Of and,using
R6212 T8535 T8531 arg1Of and,the
R6213 T8535 T8532 arg1Of and,SYBR
R6214 T8535 T8533 arg1Of and,green
R6215 T8535 T8537 arg1Of and,specific
R6216 T8535 T8543 arg1Of and,:
R6217 T8535 T8549 arg1Of and,;
R6218 T8536 T8535 arg2Of primers,and
R6219 T8537 T8538 arg1Of specific,for
R6220 T8542 T8538 arg2Of promoter,for
R6221 T8542 T8539 arg1Of promoter,the
R6222 T8542 T8540 arg1Of promoter,SerpinB2
R6223 T8542 T8541 arg1Of promoter,proximal
R6224 T8544 T8545 arg1Of forward,(
R6225 T8546 T8545 arg2Of −338/−315,(
R6226 T8547 T8545 arg3Of ),(
R6227 T8548 T8543 arg2Of 5′AAGACTCCCACAGATGGTGGCTGT3’,:
R6228 T8548 T8544 arg1Of 5′AAGACTCCCACAGATGGTGGCTGT3’,forward
R6229 T8550 T8551 arg1Of reverse,(
R6230 T8552 T8551 arg2Of −5/+19,(
R6231 T8553 T8551 arg3Of ),(
R6232 T8554 T8549 arg2Of 5′TTCTTGGAAAGCTGGCACTGTGTG3’,;
R6233 T8554 T8550 arg1Of 5′TTCTTGGAAAGCTGGCACTGTGTG3’,reverse

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T8281 111-119 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8560 111-119 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T8286 0-17 http://purl.obolibrary.org/obo/GO_0006277 denotes DNA was amplified

sentences

Id Subject Object Predicate Lexical cue
T8275 0-235 Sentence denotes DNA was amplified by semi-quantitative PCR or by qPCR using the SYBR green method and primers specific for the SerpinB2 proximal promoter: forward (−338/−315) 5′AAGACTCCCACAGATGGTGGCTGT3’; reverse (−5/+19) 5′TTCTTGGAAAGCTGGCACTGTGTG3’.
T107 0-235 Sentence denotes DNA was amplified by semi-quantitative PCR or by qPCR using the SYBR green method and primers specific for the SerpinB2 proximal promoter: forward (−338/−315) 5′AAGACTCCCACAGATGGTGGCTGT3’; reverse (−5/+19) 5′TTCTTGGAAAGCTGGCACTGTGTG3’.

simple1

Id Subject Object Predicate Lexical cue
T8304 111-119 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T8557 111-119 Protein denotes SerpinB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8569 111-119 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T8563 111-119 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8617 21-42 Protein denotes semi-quantitative PCR
T8601 107-137 Entity denotes the SerpinB2 proximal promoter
T8600 0-3 Entity denotes DNA
T8598 49-53 Protein denotes qPCR
T8590 111-119 Protein denotes SerpinB2
R6237 T8601 T8590 partOf the SerpinB2 proximal promoter,SerpinB2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8579 111-137 Protein denotes SerpinB2 proximal promoter

testone

Id Subject Object Predicate Lexical cue
T8260 111-119 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T8266 111-119 Protein denotes SerpinB2
T8263 111-119 Protein denotes SerpinB2