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PMC:3589482 / 16764-16996 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8851 231-232 . denotes .
T8850 230-231 -RRB- denotes )
T8849 224-230 NNP denotes Qiagen
T8848 223-224 -LRB- denotes (
T8847 219-222 NNP denotes Kit
T8846 206-218 NNP denotes Purification
T8845 202-205 NNP denotes PCR
T8844 193-201 NNP denotes QIAquick
T8843 189-192 DT denotes the
T8842 183-188 VBG denotes using
T8841 174-182 VBN denotes purified
T8840 169-173 RB denotes then
T8839 165-168 VBD denotes was
T8838 161-164 NNP denotes DNA
T8837 157-160 DT denotes The
T8836 155-156 . denotes .
T8835 154-155 NNP denotes C
T8834 153-154 CD denotes °
T8833 151-153 CD denotes 62
T8832 148-150 IN denotes at
T8831 144-147 NNS denotes hrs
T8830 142-143 CD denotes 2
T8829 138-141 IN denotes for
T8828 136-137 NNP denotes K
T8827 125-135 NNP denotes Proteinase
T8826 120-124 IN denotes with
T8825 111-119 VBN denotes digested
T8824 106-110 VBD denotes were
T8823 97-105 NNS denotes proteins
T8822 93-96 DT denotes the
T8821 89-92 CC denotes and
T8820 87-88 -RRB- denotes )
T8819 78-87 NNP denotes Millipore
T8818 77-78 -LRB- denotes (
T8817 70-76 NNP denotes Buffer
T8816 62-69 NNP denotes Elution
T8815 57-61 NNP denotes ChIP
T8814 54-56 IN denotes in
T8813 47-53 VBN denotes eluted
T8812 43-46 VBD denotes was
T8811 33-42 NN denotes chromatin
T8810 27-32 VBN denotes bound
T8809 23-26 DT denotes the
T8808 21-22 , denotes ,
T8807 15-21 VBN denotes washed
T8806 10-14 VBD denotes were
T8805 4-9 NNS denotes beads
T8804 0-3 DT denotes The
R6423 T8804 T8805 det The,beads
R6424 T8805 T8807 nsubjpass beads,washed
R6425 T8806 T8807 auxpass were,washed
R6426 T8807 T8807 ROOT washed,washed
R6427 T8808 T8807 punct ",",washed
R6428 T8809 T8811 det the,chromatin
R6429 T8810 T8811 amod bound,chromatin
R6430 T8811 T8813 nsubjpass chromatin,eluted
R6431 T8812 T8813 auxpass was,eluted
R6432 T8813 T8807 conj eluted,washed
R6433 T8814 T8813 prep in,eluted
R6434 T8815 T8817 compound ChIP,Buffer
R6435 T8816 T8817 compound Elution,Buffer
R6436 T8817 T8814 pobj Buffer,in
R6437 T8818 T8817 punct (,Buffer
R6438 T8819 T8817 appos Millipore,Buffer
R6439 T8820 T8817 punct ),Buffer
R6440 T8821 T8813 cc and,eluted
R6441 T8822 T8823 det the,proteins
R6442 T8823 T8825 nsubjpass proteins,digested
R6443 T8824 T8825 auxpass were,digested
R6444 T8825 T8813 conj digested,eluted
R6445 T8826 T8825 prep with,digested
R6446 T8827 T8828 compound Proteinase,K
R6447 T8828 T8826 pobj K,with
R6448 T8829 T8825 prep for,digested
R6449 T8830 T8831 nummod 2,hrs
R6450 T8831 T8829 pobj hrs,for
R6451 T8832 T8825 prep at,digested
R6452 T8833 T8835 nummod 62,C
R6453 T8834 T8835 nummod °,C
R6454 T8835 T8832 pobj C,at
R6455 T8836 T8825 punct .,digested
R6456 T8837 T8838 det The,DNA
R6457 T8838 T8841 nsubjpass DNA,purified
R6458 T8839 T8841 auxpass was,purified
R6459 T8840 T8841 advmod then,purified
R6460 T8841 T8841 ROOT purified,purified
R6461 T8842 T8841 advcl using,purified
R6462 T8843 T8847 det the,Kit
R6463 T8844 T8847 compound QIAquick,Kit
R6464 T8845 T8847 compound PCR,Kit
R6465 T8846 T8847 compound Purification,Kit
R6466 T8847 T8842 dobj Kit,using
R6467 T8848 T8847 punct (,Kit
R6468 T8849 T8847 appos Qiagen,Kit
R6469 T8850 T8847 punct ),Kit
R6470 T8851 T8841 punct .,purified

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8519 224-230 NN denotes Qiagen
T8520 230-231 -RRB- denotes )
T8518 223-224 -LRB- denotes (
T8517 219-222 NN denotes Kit
T8516 206-218 NN denotes Purification
T8515 202-205 NN denotes PCR
T8514 193-201 NNP denotes QIAquick
T8513 189-192 DT denotes the
T8512 183-188 VB denotes using
T8511 174-182 VB denotes purified
T8510 169-173 RB denotes then
T8509 165-168 VB denotes was
T8508 161-164 NN denotes DNA
T8507 157-160 DT denotes The
T8506 151-156 NNP denotes 62°C.
T8505 148-150 IN denotes at
T8504 144-147 NN denotes hrs
T8503 142-143 CD denotes 2
T8502 138-141 IN denotes for
T8501 136-137 NN denotes K
T8500 125-135 NN denotes Proteinase
T8499 120-124 IN denotes with
T8498 111-119 VB denotes digested
T8497 106-110 VB denotes were
T8496 97-105 NN denotes proteins
T8495 93-96 DT denotes the
T8494 89-92 CC denotes and
T8493 87-88 -RRB- denotes )
T8492 78-87 NNP denotes Millipore
T8491 77-78 -LRB- denotes (
T8490 70-76 NNP denotes Buffer
T8489 62-69 NNP denotes Elution
T8488 57-61 NNP denotes ChIP
T8487 54-56 IN denotes in
T8486 47-53 VB denotes eluted
T8485 43-46 VB denotes was
T8484 33-42 NN denotes chromatin
T8483 27-32 VB denotes bound
T8482 23-26 DT denotes the
T8481 21-22 -COMMA- denotes ,
T8480 15-21 VB denotes washed
T8479 10-14 VB denotes were
T8478 4-9 NN denotes beads
T8477 0-3 DT denotes The
R6151 T8478 T8477 arg1Of beads,The
R6152 T8478 T8479 arg1Of beads,were
R6153 T8478 T8480 arg2Of beads,washed
R6154 T8480 T8479 arg2Of washed,were
R6155 T8484 T8482 arg1Of chromatin,the
R6156 T8484 T8483 arg2Of chromatin,bound
R6157 T8484 T8485 arg1Of chromatin,was
R6158 T8484 T8486 arg2Of chromatin,eluted
R6159 T8486 T8479 modOf eluted,were
R6160 T8486 T8481 arg1Of eluted,","
R6161 T8486 T8485 arg2Of eluted,was
R6162 T8486 T8487 arg1Of eluted,in
R6163 T8486 T8494 arg1Of eluted,and
R6164 T8490 T8487 arg2Of Buffer,in
R6165 T8490 T8488 arg1Of Buffer,ChIP
R6166 T8490 T8489 arg1Of Buffer,Elution
R6167 T8490 T8491 arg1Of Buffer,(
R6168 T8492 T8491 arg2Of Millipore,(
R6169 T8493 T8491 arg3Of ),(
R6170 T8496 T8495 arg1Of proteins,the
R6171 T8496 T8497 arg1Of proteins,were
R6172 T8496 T8498 arg2Of proteins,digested
R6173 T8498 T8497 arg2Of digested,were
R6174 T8498 T8499 arg1Of digested,with
R6175 T8501 T8499 arg2Of K,with
R6176 T8501 T8500 arg1Of K,Proteinase
R6177 T8501 T8502 arg1Of K,for
R6178 T8501 T8505 arg1Of K,at
R6179 T8504 T8502 arg2Of hrs,for
R6180 T8504 T8503 arg1Of hrs,2
R6181 T8506 T8505 arg2Of 62°C.,at
R6182 T8508 T8507 arg1Of DNA,The
R6183 T8508 T8509 arg1Of DNA,was
R6184 T8508 T8511 arg2Of DNA,purified
R6185 T8511 T8494 arg2Of purified,and
R6186 T8511 T8497 modOf purified,were
R6187 T8511 T8509 arg2Of purified,was
R6188 T8511 T8510 arg1Of purified,then
R6189 T8511 T8512 modOf purified,using
R6190 T8517 T8512 arg2Of Kit,using
R6191 T8517 T8513 arg1Of Kit,the
R6192 T8517 T8514 arg1Of Kit,QIAquick
R6193 T8517 T8515 arg1Of Kit,PCR
R6194 T8517 T8516 arg1Of Kit,Purification
R6195 T8517 T8518 arg1Of Kit,(
R6196 T8519 T8518 arg2Of Qiagen,(
R6197 T8520 T8518 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T8280 125-137 Protein denotes Proteinase K

GO-BP

Id Subject Object Predicate Lexical cue
T8285 125-135 http://purl.obolibrary.org/obo/GO_0004175 denotes Proteinase

GO-MF

Id Subject Object Predicate Lexical cue
T8290 125-135 http://purl.obolibrary.org/obo/GO_0004175 denotes Proteinase

GO-CC

Id Subject Object Predicate Lexical cue
T8294 33-42 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

sentences

Id Subject Object Predicate Lexical cue
T8274 0-232 Sentence denotes The beads were washed, the bound chromatin was eluted in ChIP Elution Buffer (Millipore) and the proteins were digested with Proteinase K for 2 hrs at 62°C. The DNA was then purified using the QIAquick PCR Purification Kit (Qiagen).
T105 0-156 Sentence denotes The beads were washed, the bound chromatin was eluted in ChIP Elution Buffer (Millipore) and the proteins were digested with Proteinase K for 2 hrs at 62°C.
T106 157-232 Sentence denotes The DNA was then purified using the QIAquick PCR Purification Kit (Qiagen).

simple1

Id Subject Object Predicate Lexical cue
T8303 125-137 Protein denotes Proteinase K

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T8556 125-137 Protein denotes Proteinase K

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8568 125-137 Protein denotes Proteinase K

DLUT931

Id Subject Object Predicate Lexical cue
T8562 125-137 Protein denotes Proteinase K

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8618 23-42 Binding denotes the bound chromatin
T8610 202-205 Protein denotes PCR
T8606 57-88 Entity denotes ChIP Elution Buffer (Millipore)
T8599 93-105 Protein denotes the proteins
T8596 23-42 Entity denotes the bound chromatin
T8595 142-147 Protein denotes 2 hrs
T8594 125-137 Protein denotes Proteinase K
T8593 219-231 Protein denotes Kit (Qiagen)
T8592 157-164 Entity denotes The DNA
R6236 T8596 T8618 themeOf the bound chromatin,the bound chromatin

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8578 125-137 Protein denotes Proteinase K

testone

Id Subject Object Predicate Lexical cue
T8259 125-137 Protein denotes Proteinase K

test3

Id Subject Object Predicate Lexical cue
T8265 125-137 Protein denotes Proteinase K
T8262 125-137 Protein denotes Proteinase K