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PMC:3589482 / 16383-16653 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8787 269-270 . denotes .
T8786 268-269 -RRB- denotes )
T8785 259-268 NNP denotes Millipore
T8784 258-259 -LRB- denotes (
T8783 257-258 -RRB- denotes )
T8782 251-257 NNP denotes CTD4H8
T8781 245-250 NNP denotes Clone
T8780 244-245 -LRB- denotes (
T8779 241-243 NNP denotes II
T8778 230-240 NN denotes polymerase
T8777 226-229 NNP denotes RNA
T8776 222-225 CC denotes and
T8775 220-221 -RRB- denotes )
T8774 205-220 NNPS denotes Biotechnologies
T8773 200-204 NNP denotes Cruz
T8772 194-199 NNP denotes Santa
T8771 193-194 -LRB- denotes (
T8770 192-193 -RRB- denotes )
T8769 185-192 JJ denotes sc-2027
T8768 184-185 -LRB- denotes (
T8767 180-183 NNP denotes IgG
T8766 173-179 NN denotes rabbit
T8765 166-172 JJ denotes normal
T8764 164-165 , denotes ,
T8763 163-164 -RRB- denotes )
T8762 154-163 NN denotes sc-16993X
T8761 153-154 -LRB- denotes (
T8760 151-152 -RRB- denotes )
T8759 147-151 CD denotes T217
T8758 146-147 -LRB- denotes (
T8757 144-145 NN denotes β
T8756 143-144 : denotes -
T8755 136-143 NNP denotes p-C/EBP
T8754 134-135 , denotes ,
T8753 133-134 -RRB- denotes )
T8752 126-133 NN denotes sc-150X
T8751 125-126 -LRB- denotes (
T8750 123-124 NN denotes β
T8749 122-123 : denotes -
T8748 117-122 SYM denotes C/EBP
T8747 115-116 : denotes :
T8746 105-115 NNS denotes antibodies
T8745 95-104 VBG denotes following
T8744 91-94 DT denotes the
T8743 88-90 IN denotes of
T8742 85-87 NN denotes µg
T8741 83-84 CD denotes 1
T8740 77-82 JJS denotes least
T8739 74-76 IN denotes at
T8738 69-73 IN denotes with
T8737 59-68 JJ denotes overnight
T8736 57-58 NNP denotes C
T8735 56-57 CD denotes °
T8734 55-56 CD denotes 4
T8733 52-54 IN denotes at
T8732 33-51 VBN denotes immunoprecipitated
T8731 29-32 VBD denotes was
T8730 19-28 NN denotes chromatin
T8729 16-18 IN denotes of
T8728 9-15 NN denotes amount
T8727 3-8 JJ denotes equal
T8726 0-2 DT denotes An
R6345 T8726 T8728 det An,amount
R6346 T8727 T8728 amod equal,amount
R6347 T8728 T8732 nsubjpass amount,immunoprecipitated
R6348 T8729 T8728 prep of,amount
R6349 T8730 T8729 pobj chromatin,of
R6350 T8731 T8732 auxpass was,immunoprecipitated
R6351 T8732 T8732 ROOT immunoprecipitated,immunoprecipitated
R6352 T8733 T8732 prep at,immunoprecipitated
R6353 T8734 T8735 nummod 4,°
R6354 T8735 T8736 nummod °,C
R6355 T8736 T8737 compound C,overnight
R6356 T8737 T8733 pobj overnight,at
R6357 T8738 T8737 prep with,overnight
R6358 T8739 T8740 advmod at,least
R6359 T8740 T8741 advmod least,1
R6360 T8741 T8742 nummod 1,µg
R6361 T8742 T8738 pobj µg,with
R6362 T8743 T8742 prep of,µg
R6363 T8744 T8746 det the,antibodies
R6364 T8745 T8746 amod following,antibodies
R6365 T8746 T8743 pobj antibodies,of
R6366 T8747 T8742 punct :,µg
R6367 T8748 T8750 punct C/EBP,β
R6368 T8749 T8750 punct -,β
R6369 T8750 T8742 appos β,µg
R6370 T8751 T8752 punct (,sc-150X
R6371 T8752 T8750 appos sc-150X,β
R6372 T8753 T8752 punct ),sc-150X
R6373 T8754 T8750 punct ",",β
R6374 T8755 T8757 compound p-C/EBP,β
R6375 T8756 T8757 punct -,β
R6376 T8757 T8750 appos β,β
R6377 T8758 T8757 punct (,β
R6378 T8759 T8757 appos T217,β
R6379 T8760 T8757 punct ),β
R6380 T8761 T8762 punct (,sc-16993X
R6381 T8762 T8757 appos sc-16993X,β
R6382 T8763 T8757 punct ),β
R6383 T8764 T8757 punct ",",β
R6384 T8765 T8766 amod normal,rabbit
R6385 T8766 T8779 compound rabbit,II
R6386 T8767 T8779 nmod IgG,II
R6387 T8768 T8769 punct (,sc-2027
R6388 T8769 T8767 appos sc-2027,IgG
R6389 T8770 T8769 punct ),sc-2027
R6390 T8771 T8774 punct (,Biotechnologies
R6391 T8772 T8774 compound Santa,Biotechnologies
R6392 T8773 T8774 compound Cruz,Biotechnologies
R6393 T8774 T8769 appos Biotechnologies,sc-2027
R6394 T8775 T8774 punct ),Biotechnologies
R6395 T8776 T8774 cc and,Biotechnologies
R6396 T8777 T8779 compound RNA,II
R6397 T8778 T8779 compound polymerase,II
R6398 T8779 T8750 conj II,β
R6399 T8780 T8779 punct (,II
R6400 T8781 T8782 compound Clone,CTD4H8
R6401 T8782 T8779 appos CTD4H8,II
R6402 T8783 T8779 punct ),II
R6403 T8784 T8779 punct (,II
R6404 T8785 T8779 appos Millipore,II
R6405 T8786 T8779 punct ),II
R6406 T8787 T8732 punct .,immunoprecipitated

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8461 268-269 -RRB- denotes )
T8460 259-268 NN denotes Millipore
T8459 258-259 -LRB- denotes (
T8458 257-258 -RRB- denotes )
T8457 251-257 NN denotes CTD4H8
T8456 245-250 NN denotes Clone
T8455 244-245 -LRB- denotes (
T8454 241-243 CD denotes II
T8453 230-240 NN denotes polymerase
T8452 226-229 NN denotes RNA
T8451 222-225 CC denotes and
T8450 220-221 -RRB- denotes )
T8449 205-220 NNP denotes Biotechnologies
T8448 200-204 NNP denotes Cruz
T8447 194-199 NNP denotes Santa
T8446 193-194 -LRB- denotes (
T8445 192-193 -RRB- denotes )
T8444 185-192 NN denotes sc-2027
T8443 184-185 -LRB- denotes (
T8442 180-183 NN denotes IgG
T8441 173-179 NN denotes rabbit
T8440 166-172 JJ denotes normal
T8439 164-165 -COMMA- denotes ,
T8438 163-164 -RRB- denotes )
T8437 154-163 NN denotes sc-16993X
T8436 153-154 -LRB- denotes (
T8435 151-152 -RRB- denotes )
T8434 147-151 NN denotes T217
T8433 146-147 -LRB- denotes (
T8432 136-145 NN denotes p-C/EBP-β
T8431 134-135 -COMMA- denotes ,
T8430 133-134 -RRB- denotes )
T8429 126-133 NN denotes sc-150X
T8428 125-126 -LRB- denotes (
T8427 117-124 NN denotes C/EBP-β
T8426 115-116 -COLON- denotes :
T8425 105-115 NN denotes antibodies
T8424 95-104 JJ denotes following
T8423 91-94 DT denotes the
T8422 88-90 IN denotes of
T8421 85-87 NN denotes µg
T8420 83-84 CD denotes 1
T8419 77-82 JJ denotes least
T8418 74-76 IN denotes at
T8417 69-73 IN denotes with
T8416 59-68 RB denotes overnight
T8415 55-58 NN denotes 4°C
T8414 52-54 IN denotes at
T8413 33-51 VB denotes immunoprecipitated
T8412 29-32 VB denotes was
T8411 19-28 NN denotes chromatin
T8410 16-18 IN denotes of
T8409 9-15 NN denotes amount
T8408 3-8 JJ denotes equal
T8407 0-2 DT denotes An
R6081 T8409 T8407 arg1Of amount,An
R6082 T8409 T8408 arg1Of amount,equal
R6083 T8409 T8410 arg1Of amount,of
R6084 T8409 T8412 arg1Of amount,was
R6085 T8409 T8413 arg2Of amount,immunoprecipitated
R6086 T8411 T8410 arg2Of chromatin,of
R6087 T8413 T8412 arg2Of immunoprecipitated,was
R6088 T8413 T8414 arg1Of immunoprecipitated,at
R6089 T8413 T8417 arg1Of immunoprecipitated,with
R6090 T8415 T8414 arg2Of 4°C,at
R6091 T8417 T8416 arg1Of with,overnight
R6092 T8420 T8418 arg1Of 1,at
R6093 T8420 T8419 arg1Of 1,least
R6094 T8421 T8417 arg2Of µg,with
R6095 T8421 T8420 arg1Of µg,1
R6096 T8421 T8422 arg1Of µg,of
R6097 T8421 T8426 arg1Of µg,:
R6098 T8425 T8422 arg2Of antibodies,of
R6099 T8425 T8423 arg1Of antibodies,the
R6100 T8425 T8424 arg1Of antibodies,following
R6101 T8427 T8426 arg2Of C/EBP-β,:
R6102 T8427 T8428 arg1Of C/EBP-β,(
R6103 T8427 T8431 arg1Of C/EBP-β,","
R6104 T8427 T8439 arg1Of C/EBP-β,","
R6105 T8429 T8428 arg2Of sc-150X,(
R6106 T8430 T8428 arg3Of ),(
R6107 T8432 T8431 arg2Of p-C/EBP-β,","
R6108 T8432 T8433 arg1Of p-C/EBP-β,(
R6109 T8432 T8436 arg1Of p-C/EBP-β,(
R6110 T8434 T8433 arg2Of T217,(
R6111 T8435 T8433 arg3Of ),(
R6112 T8437 T8436 arg2Of sc-16993X,(
R6113 T8438 T8436 arg3Of ),(
R6114 T8442 T8440 arg1Of IgG,normal
R6115 T8442 T8441 arg1Of IgG,rabbit
R6116 T8442 T8443 arg1Of IgG,(
R6117 T8442 T8446 arg1Of IgG,(
R6118 T8442 T8451 arg1Of IgG,and
R6119 T8444 T8443 arg2Of sc-2027,(
R6120 T8445 T8443 arg3Of ),(
R6121 T8449 T8446 arg2Of Biotechnologies,(
R6122 T8449 T8447 arg1Of Biotechnologies,Santa
R6123 T8449 T8448 arg1Of Biotechnologies,Cruz
R6124 T8450 T8446 arg3Of ),(
R6125 T8451 T8439 arg2Of and,","
R6126 T8451 T8459 arg1Of and,(
R6127 T8453 T8451 arg2Of polymerase,and
R6128 T8453 T8452 arg1Of polymerase,RNA
R6129 T8453 T8454 arg1Of polymerase,II
R6130 T8453 T8455 arg1Of polymerase,(
R6131 T8456 T8455 arg2Of Clone,(
R6132 T8456 T8457 arg1Of Clone,CTD4H8
R6133 T8458 T8455 arg3Of ),(
R6134 T8460 T8459 arg2Of Millipore,(
R6135 T8461 T8459 arg3Of ),(

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8559 138-145 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T8558 117-124 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β

GO-BP

Id Subject Object Predicate Lexical cue
T8284 226-243 http://purl.obolibrary.org/obo/GO_0003899 denotes RNA polymerase II
T8283 226-243 http://purl.obolibrary.org/obo/GO_0001055 denotes RNA polymerase II
T8282 226-243 http://purl.obolibrary.org/obo/GO_1990114 denotes RNA polymerase II

GO-MF

Id Subject Object Predicate Lexical cue
T8289 226-243 http://purl.obolibrary.org/obo/GO_0003899 denotes RNA polymerase II
T8288 226-243 http://purl.obolibrary.org/obo/GO_0001055 denotes RNA polymerase II
T8287 105-115 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T8298 226-243 http://purl.obolibrary.org/obo/GO_0005665 denotes RNA polymerase II
T8297 105-115 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T8296 105-115 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T8293 19-28 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

sentences

Id Subject Object Predicate Lexical cue
T8272 0-270 Sentence denotes An equal amount of chromatin was immunoprecipitated at 4°C overnight with at least 1 µg of the following antibodies: C/EBP-β (sc-150X), p-C/EBP-β (T217) (sc-16993X), normal rabbit IgG (sc-2027)(Santa Cruz Biotechnologies) and RNA polymerase II (Clone CTD4H8)(Millipore).
T103 0-270 Sentence denotes An equal amount of chromatin was immunoprecipitated at 4°C overnight with at least 1 µg of the following antibodies: C/EBP-β (sc-150X), p-C/EBP-β (T217) (sc-16993X), normal rabbit IgG (sc-2027)(Santa Cruz Biotechnologies) and RNA polymerase II (Clone CTD4H8)(Millipore).

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8615 91-115 Entity denotes the following antibodies
T8611 226-243 Protein denotes RNA polymerase II
T8609 117-152 Protein denotes C/EBP-β (sc-150X), p-C/EBP-β (T217)
T8603 16-28 Entity denotes of chromatin
T8602 117-135 Protein denotes C/EBP-β (sc-150X),
T8597 147-151 Entity denotes T217

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8577 245-257 Protein denotes Clone CTD4H8
T8576 226-243 Protein denotes RNA polymerase II
T8575 180-183 Protein denotes IgG
T8574 147-151 Protein denotes T217
T8573 136-145 Protein denotes p-C/EBP-β
T8572 117-124 Protein denotes C/EBP-β