PMC:3589482 / 1497-1691
Annnotations
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1031 | 193-194 | . | denotes | . |
| T1030 | 182-193 | NNS | denotes | macrophages |
| T1029 | 171-181 | JJ | denotes | peritoneal |
| T1028 | 159-170 | JJ | denotes | β-deficient |
| T1027 | 158-159 | : | denotes | - |
| T1026 | 153-158 | NNP | denotes | C/EBP |
| T1025 | 145-152 | JJ | denotes | primary |
| T1024 | 141-144 | CC | denotes | and |
| T1023 | 139-140 | -RRB- | denotes | ) |
| T1022 | 135-139 | NNS | denotes | MEFs |
| T1021 | 134-135 | -LRB- | denotes | ( |
| T1020 | 122-133 | NNS | denotes | fibroblasts |
| T1019 | 112-121 | JJ | denotes | embryonic |
| T1018 | 106-111 | NN | denotes | mouse |
| T1017 | 99-105 | JJ | denotes | β-null |
| T1016 | 98-99 | : | denotes | - |
| T1015 | 93-98 | NNP | denotes | C/EBP |
| T1014 | 90-92 | IN | denotes | in |
| T1013 | 80-89 | VBN | denotes | abrogated |
| T1012 | 71-79 | RB | denotes | severely |
| T1011 | 67-70 | VBD | denotes | was |
| T1010 | 56-66 | NN | denotes | expression |
| T1009 | 47-55 | JJ | denotes | SerpinB2 |
| T1008 | 35-46 | JJ | denotes | LPS-induced |
| T1007 | 31-34 | CC | denotes | and |
| T1006 | 18-30 | JJ | denotes | constitutive |
| T1005 | 13-17 | DT | denotes | both |
| T1004 | 11-12 | , | denotes | , |
| T1003 | 0-11 | RB | denotes | Importantly |
| R590 | T1003 | T1013 | advmod | Importantly,abrogated |
| R591 | T1004 | T1013 | punct | ",",abrogated |
| R592 | T1005 | T1006 | preconj | both,constitutive |
| R593 | T1006 | T1010 | amod | constitutive,expression |
| R594 | T1007 | T1006 | cc | and,constitutive |
| R595 | T1008 | T1006 | conj | LPS-induced,constitutive |
| R596 | T1009 | T1010 | amod | SerpinB2,expression |
| R597 | T1010 | T1013 | nsubjpass | expression,abrogated |
| R598 | T1011 | T1013 | auxpass | was,abrogated |
| R599 | T1012 | T1013 | advmod | severely,abrogated |
| R600 | T1013 | T1013 | ROOT | abrogated,abrogated |
| R601 | T1014 | T1013 | prep | in,abrogated |
| R602 | T1015 | T1014 | pobj | C/EBP,in |
| R603 | T1016 | T1013 | punct | -,abrogated |
| R604 | T1017 | T1013 | advcl | β-null,abrogated |
| R605 | T1018 | T1020 | nmod | mouse,fibroblasts |
| R606 | T1019 | T1020 | amod | embryonic,fibroblasts |
| R607 | T1020 | T1017 | appos | fibroblasts,β-null |
| R608 | T1021 | T1022 | punct | (,MEFs |
| R609 | T1022 | T1020 | appos | MEFs,fibroblasts |
| R610 | T1023 | T1020 | punct | ),fibroblasts |
| R611 | T1024 | T1020 | cc | and,fibroblasts |
| R612 | T1025 | T1030 | amod | primary,macrophages |
| R613 | T1026 | T1030 | nmod | C/EBP,macrophages |
| R614 | T1027 | T1028 | punct | -,β-deficient |
| R615 | T1028 | T1030 | amod | β-deficient,macrophages |
| R616 | T1029 | T1030 | amod | peritoneal,macrophages |
| R617 | T1030 | T1020 | conj | macrophages,fibroblasts |
| R618 | T1031 | T1013 | punct | .,abrogated |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T476 | 182-193 | NN | denotes | macrophages |
| T475 | 171-181 | JJ | denotes | peritoneal |
| T474 | 153-170 | JJ | denotes | C/EBP-β-deficient |
| T473 | 145-152 | JJ | denotes | primary |
| T472 | 141-144 | CC | denotes | and |
| T471 | 139-140 | -RRB- | denotes | ) |
| T470 | 135-139 | NN | denotes | MEFs |
| T469 | 134-135 | -LRB- | denotes | ( |
| T468 | 122-133 | NN | denotes | fibroblasts |
| T467 | 112-121 | JJ | denotes | embryonic |
| T466 | 106-111 | NN | denotes | mouse |
| T465 | 93-105 | JJ | denotes | C/EBP-β-null |
| T464 | 90-92 | IN | denotes | in |
| T463 | 80-89 | VB | denotes | abrogated |
| T462 | 71-79 | RB | denotes | severely |
| T461 | 67-70 | VB | denotes | was |
| T460 | 56-66 | NN | denotes | expression |
| T459 | 47-55 | NN | denotes | SerpinB2 |
| T458 | 35-46 | JJ | denotes | LPS-induced |
| T457 | 31-34 | CC | denotes | and |
| T456 | 18-30 | JJ | denotes | constitutive |
| T455 | 13-17 | CC | denotes | both |
| T454 | 11-12 | -COMMA- | denotes | , |
| T453 | 0-11 | RB | denotes | Importantly |
| R264 | T456 | T457 | arg1Of | constitutive,and |
| R265 | T458 | T457 | arg2Of | LPS-induced,and |
| R266 | T460 | T455 | arg1Of | expression,both |
| R267 | T460 | T456 | arg1Of | expression,constitutive |
| R268 | T460 | T458 | arg1Of | expression,LPS-induced |
| R269 | T460 | T459 | arg1Of | expression,SerpinB2 |
| R270 | T460 | T461 | arg1Of | expression,was |
| R271 | T460 | T463 | arg2Of | expression,abrogated |
| R272 | T463 | T453 | arg1Of | abrogated,Importantly |
| R273 | T463 | T454 | arg1Of | abrogated,"," |
| R274 | T463 | T461 | arg2Of | abrogated,was |
| R275 | T463 | T462 | arg1Of | abrogated,severely |
| R276 | T463 | T464 | arg1Of | abrogated,in |
| R277 | T468 | T465 | arg1Of | fibroblasts,C/EBP-β-null |
| R278 | T468 | T466 | arg1Of | fibroblasts,mouse |
| R279 | T468 | T467 | arg1Of | fibroblasts,embryonic |
| R280 | T468 | T469 | arg1Of | fibroblasts,( |
| R281 | T468 | T472 | arg1Of | fibroblasts,and |
| R282 | T470 | T469 | arg2Of | MEFs,( |
| R283 | T471 | T469 | arg3Of | ),( |
| R284 | T472 | T464 | arg2Of | and,in |
| R285 | T476 | T472 | arg2Of | macrophages,and |
| R286 | T476 | T473 | arg1Of | macrophages,primary |
| R287 | T476 | T474 | arg1Of | macrophages,C/EBP-β-deficient |
| R288 | T476 | T475 | arg1Of | macrophages,peritoneal |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T171 | 47-55 | Protein | denotes | SerpinB2 |
| T172 | 93-100 | Protein | denotes | C/EBP-β |
| T173 | 153-160 | Protein | denotes | C/EBP-β |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T526 | 93-100 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
| T527 | 153-160 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
| T536 | 47-55 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T106 | 0-194 | Sentence | denotes | Importantly, both constitutive and LPS-induced SerpinB2 expression was severely abrogated in C/EBP-β-null mouse embryonic fibroblasts (MEFs) and primary C/EBP-β-deficient peritoneal macrophages. |
| T10 | 0-194 | Sentence | denotes | Importantly, both constitutive and LPS-induced SerpinB2 expression was severely abrogated in C/EBP-β-null mouse embryonic fibroblasts (MEFs) and primary C/EBP-β-deficient peritoneal macrophages. |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T226 | 153-160 | Protein | denotes | C/EBP-β |
| T224 | 47-55 | Protein | denotes | SerpinB2 |
| T225 | 93-100 | Protein | denotes | C/EBP-β |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T520 | 80-89 | Negative_regulation | denotes | abrogated |
| T519 | 56-66 | Gene_expression | denotes | expression |
| T518 | 161-170 | Negative_regulation | denotes | deficient |
| T517 | 35-46 | Positive_regulation | denotes | LPS-induced |
| T507 | 153-160 | Protein | denotes | C/EBP-β |
| T506 | 93-100 | Protein | denotes | C/EBP-β |
| T505 | 47-55 | Protein | denotes | SerpinB2 |
| R304 | T505 | T519 | themeOf | SerpinB2,expression |
| R305 | T507 | T518 | themeOf | C/EBP-β,deficient |
| R311 | T519 | T520 | themeOf | expression,abrogated |
| R312 | T519 | T517 | themeOf | expression,LPS-induced |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T630 | 35-46 | Positive_regulation | denotes | LPS-induced |
| T631 | 56-66 | Gene_expression | denotes | expression |
| T615 | 47-55 | Protein | denotes | SerpinB2 |
| T616 | 93-100 | Protein | denotes | C/EBP-β |
| T617 | 153-160 | Protein | denotes | C/EBP-β |
| T627 | 101-105 | Negative_regulation | denotes | null |
| T628 | 161-170 | Negative_regulation | denotes | deficient |
| T629 | 80-89 | Negative_regulation | denotes | abrogated |
| R737 | T631 | T629 | themeOf | expression,abrogated |
| R727 | T615 | T631 | themeOf | SerpinB2,expression |
| R729 | T616 | T627 | themeOf | C/EBP-β,null |
| R730 | T617 | T628 | themeOf | C/EBP-β,deficient |
| R736 | T628 | T629 | causeOf | deficient,abrogated |
| R740 | T631 | T630 | themeOf | expression,LPS-induced |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T596 | 35-46 | Positive_regulation | denotes | LPS-induced |
| T595 | 18-30 | Positive_regulation | denotes | constitutive |
| T594 | 161-170 | Negative_regulation | denotes | deficient |
| T593 | 80-89 | Negative_regulation | denotes | abrogated |
| T592 | 56-66 | Gene_expression | denotes | expression |
| T581 | 47-55 | Protein | denotes | SerpinB2 |
| T582 | 93-100 | Protein | denotes | C/EBP-β |
| T583 | 153-160 | Protein | denotes | C/EBP-β |
| R318 | T592 | T596 | themeOf | expression,LPS-induced |
| R316 | T592 | T593 | themeOf | expression,abrogated |
| R687 | T581 | T592 | themeOf | SerpinB2,expression |
| R688 | T583 | T594 | themeOf | C/EBP-β,deficient |
| R317 | T592 | T595 | themeOf | expression,constitutive |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T708 | 112-140 | Entity | denotes | embryonic fibroblasts (MEFs) |
| T712 | 93-100 | Protein | denotes | C/EBP-β |
| T717 | 47-55 | Protein | denotes | SerpinB2 |
| T721 | 135-139 | Protein | denotes | MEFs |
| T734 | 145-193 | Entity | denotes | primary C/EBP-β-deficient peritoneal macrophages |
| T736 | 35-46 | Entity | denotes | LPS-induced |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T665 | 161-170 | Negative_regulation | denotes | deficient |
| T664 | 80-89 | Negative_regulation | denotes | abrogated |
| T663 | 56-66 | Gene_expression | denotes | expression |
| T662 | 153-160 | Protein | denotes | C/EBP-β |
| T661 | 93-100 | Protein | denotes | C/EBP-β |
| T660 | 47-55 | Protein | denotes | SerpinB2 |
| R331 | T660 | T663 | themeOf | SerpinB2,expression |
| R332 | T662 | T665 | themeOf | C/EBP-β,deficient |
| R333 | T663 | T664 | themeOf | expression,abrogated |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T46 | 161-170 | Negative_regulation | denotes | deficient |
| T45 | 101-105 | Negative_regulation | denotes | null |
| T44 | 80-89 | Negative_regulation | denotes | abrogated |
| T43 | 56-66 | Gene_expression | denotes | expression |
| T42 | 39-46 | Positive_regulation | denotes | induced |
| T36 | 153-160 | Protein | denotes | C/EBP-β |
| T35 | 93-100 | Protein | denotes | C/EBP-β |
| T34 | 47-55 | Protein | denotes | SerpinB2 |
| R4 | T34 | T43 | themeOf | SerpinB2,expression |
| R6 | T36 | T46 | themeOf | C/EBP-β,deficient |
| R9 | T42 | T44 | themeOf | induced,abrogated |
| R10 | T43 | T42 | themeOf | expression,induced |
| R11 | T43 | T44 | themeOf | expression,abrogated |
| R12 | T45 | T44 | causeOf | null,abrogated |
| R13 | T46 | T44 | causeOf | deficient,abrogated |
| R5 | T35 | T45 | themeOf | C/EBP-β,null |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T93 | 161-170 | Negative_regulation | denotes | deficient |
| T92 | 153-160 | Protein | denotes | C/EBP-β |
| T91 | 101-105 | Negative_regulation | denotes | null |
| T90 | 93-100 | Protein | denotes | C/EBP-β |
| T89 | 80-89 | Negative_regulation | denotes | abrogated |
| T88 | 56-66 | Gene_expression | denotes | expression |
| T87 | 47-55 | Protein | denotes | SerpinB2 |
| T86 | 39-46 | Positive_regulation | denotes | induced |
| T65 | 153-160 | Protein | denotes | C/EBP-β |
| T64 | 93-100 | Protein | denotes | C/EBP-β |
| T63 | 47-55 | Protein | denotes | SerpinB2 |
| R21 | T87 | T88 | themeOf | SerpinB2,expression |
| R22 | T88 | T86 | themeOf | expression,induced |
| R23 | T88 | T89 | themeOf | expression,abrogated |
| R24 | T90 | T91 | themeOf | C/EBP-β,null |
| R25 | T91 | T89 | causeOf | null,abrogated |
| R26 | T92 | T93 | themeOf | C/EBP-β,deficient |
| R20 | T86 | T89 | themeOf | induced,abrogated |
| R27 | T93 | T89 | causeOf | deficient,abrogated |