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PMC:3589482 / 14875-15779 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8253 903-904 . denotes .
T8252 902-903 -RRB- denotes )
T8251 896-902 JJ denotes sc-158
T8250 895-896 -LRB- denotes (
T8249 893-894 NN denotes ε
T8248 892-893 : denotes -
T8247 882-892 JJ denotes anti-C/EBP
T8246 878-881 CC denotes and
T8245 876-877 -RRB- denotes )
T8244 870-876 JJ denotes sc-151
T8243 869-870 -LRB- denotes (
T8242 867-868 NN denotes δ
T8241 866-867 : denotes -
T8240 856-866 JJ denotes anti-C/EBP
T8239 854-855 , denotes ,
T8238 853-854 -RRB- denotes )
T8237 847-853 JJ denotes sc-150
T8236 846-847 -LRB- denotes (
T8235 844-845 NN denotes β
T8234 843-844 : denotes -
T8233 833-843 JJ denotes anti-C/EBP
T8232 831-832 , denotes ,
T8231 830-831 -RRB- denotes )
T8230 825-830 JJ denotes sc-61
T8229 824-825 -LRB- denotes (
T8228 822-823 NN denotes α
T8227 821-822 : denotes -
T8226 811-821 JJ denotes anti-C/EBP
T8225 809-810 : denotes :
T8224 805-809 NNP denotes Cruz
T8223 799-804 NNP denotes Santa
T8222 794-798 IN denotes from
T8221 784-793 VBN denotes purchased
T8220 779-783 VBD denotes were
T8219 768-778 NNS denotes Antibodies
T8218 766-767 . denotes .
T8217 758-766 NN denotes antibody
T8216 752-757 NNP denotes C/EBP
T8215 743-751 JJ denotes specific
T8214 740-742 IN denotes of
T8213 737-739 NN denotes µg
T8212 735-736 CD denotes 4
T8211 730-734 IN denotes with
T8210 726-729 NN denotes ice
T8209 723-725 IN denotes on
T8208 719-722 NNS denotes hrs
T8207 717-718 CD denotes 2
T8206 703-716 JJ denotes pre-incubated
T8205 698-702 VBD denotes were
T8204 689-697 NNS denotes extracts
T8203 681-688 JJ denotes nuclear
T8202 679-680 , denotes ,
T8201 673-679 NNS denotes assays
T8200 662-672 JJ denotes supershift
T8199 658-661 IN denotes For
T8198 656-657 . denotes .
T8197 650-656 NNP denotes 10V/cm
T8196 647-649 IN denotes at
T8195 643-646 NNP denotes TBE
T8194 640-642 CD denotes 1x
T8193 637-639 IN denotes in
T8192 635-636 -RRB- denotes )
T8191 634-635 -RRB- denotes )
T8190 627-634 NNP denotes Bio-Rad
T8189 626-627 -LRB- denotes (
T8188 611-625 NN denotes bis-acrylamide
T8187 610-611 : denotes :
T8186 600-610 NN denotes acrylamide
T8185 598-599 CD denotes 1
T8184 597-598 NN denotes ∶
T8183 595-597 CD denotes 29
T8182 594-595 -LRB- denotes (
T8181 589-593 NNS denotes gels
T8180 574-588 NN denotes polyacrylamide
T8179 572-573 NN denotes %
T8178 571-572 CD denotes 5
T8177 568-570 IN denotes on
T8176 556-567 NN denotes temperature
T8175 551-555 NN denotes room
T8174 548-550 IN denotes at
T8173 532-547 NN denotes electrophoresis
T8172 529-531 IN denotes by
T8171 520-528 VBN denotes resolved
T8170 515-519 VBD denotes were
T8169 506-514 NNS denotes products
T8168 497-505 NN denotes reaction
T8167 489-496 VBG denotes Binding
T8166 487-488 . denotes .
T8165 476-487 NN denotes temperature
T8164 471-475 NN denotes room
T8163 468-470 IN denotes at
T8162 460-467 NNS denotes minutes
T8161 457-459 CD denotes 20
T8160 453-456 IN denotes for
T8159 443-452 VBN denotes performed
T8158 438-442 VBD denotes were
T8157 432-437 NN denotes probe
T8156 418-431 VBN denotes radiolabelled
T8155 415-417 IN denotes of
T8154 413-414 -RRB- denotes )
T8153 411-413 NN denotes ng
T8152 407-410 CD denotes 0.2
T8151 404-406 TO denotes to
T8150 399-403 CD denotes 0.05
T8149 398-399 -LRB- denotes (
T8148 394-397 NN denotes cpm
T8147 387-393 CD denotes 20,000
T8146 384-386 TO denotes to
T8145 377-383 CD denotes 10,000
T8144 373-376 CC denotes and
T8143 364-372 NNS denotes extracts
T8142 356-363 JJ denotes nuclear
T8141 353-355 IN denotes of
T8140 350-352 NN denotes µg
T8139 348-349 CD denotes 6
T8107 244-254 VBG denotes containing
T8106 242-243 -RRB- denotes )
T8105 240-242 NN denotes µl
T8104 237-239 CD denotes 25
T8103 236-237 -LRB- denotes (
T8102 226-235 NNS denotes reactions
T8101 218-225 JJ denotes binding
T8100 214-217 NNP denotes DNA
T8099 212-213 . denotes .
T8098 211-212 NNP denotes ]
T8097 209-211 CD denotes 41
T8096 208-209 NNP denotes [
T8095 201-207 NN denotes method
T8094 195-200 NN denotes lysis
T8093 185-194 NN denotes detergent
T8092 181-184 DT denotes the
T8091 178-180 IN denotes by
T8090 169-177 VBN denotes prepared
T8089 164-168 VBD denotes were
T8088 155-163 NNS denotes extracts
T8087 147-154 JJ denotes nuclear
T8086 141-146 CD denotes 264.7
T8085 137-140 NNP denotes RAW
T8084 135-136 . denotes .
T8083 132-135 NNP denotes ATP
T8082 131-132 : denotes -
T8081 130-131 NNP denotes ]
T8080 125-130 NNP denotes γ-32P
T8079 124-125 NNP denotes [
T8078 120-123 CC denotes and
T8077 113-119 NN denotes kinase
T8076 98-112 NN denotes polynucleotide
T8075 95-97 CD denotes T4
T8074 89-94 VBG denotes using
T8073 80-88 JJ denotes prepared
T8072 75-79 VBD denotes were
T8071 68-74 NNS denotes assays
T8070 62-67 NN denotes shift
T8069 58-61 NN denotes gel
T8068 54-57 IN denotes for
T8067 47-53 NNS denotes probes
T8066 31-46 NN denotes oligonucleotide
T8065 15-30 JJ denotes double-stranded
T8064 13-14 , denotes ,
T8063 0-13 NNP denotes Radiolabelled
T8138 346-347 , denotes ,
T8137 345-346 -RRB- denotes )
T8136 340-345 JJ denotes dI-dC
T8135 339-340 -LRB- denotes (
T8134 334-338 NN denotes poly
T8133 331-333 NN denotes µg
T8132 329-330 CD denotes 1
T8131 327-328 , denotes ,
T8130 317-327 NN denotes Ficoll-400
T8129 315-316 NN denotes %
T8128 313-315 CD denotes 20
T8127 311-312 , denotes ,
T8126 303-311 NN denotes glycerol
T8125 301-302 NN denotes %
T8124 299-301 CD denotes 30
T8123 297-298 , denotes ,
T8122 294-297 NNP denotes DTT
T8121 291-293 NNP denotes mM
T8120 289-290 CD denotes 2
T8119 287-288 , denotes ,
T8118 284-287 NNP denotes BSA
T8117 281-283 NN denotes ml
T8116 280-281 NN denotes /
T8115 278-280 NN denotes µg
T8114 275-277 CD denotes 10
T8113 273-274 , denotes ,
T8112 270-273 CD denotes 7.9
T8111 267-269 NNP denotes pH
T8110 261-266 NNP denotes HEPES
T8109 258-260 NNP denotes mM
T8108 255-257 CD denotes 10
R5785 T8063 T8063 ROOT Radiolabelled,Radiolabelled
R5786 T8064 T8063 punct ",",Radiolabelled
R5787 T8065 T8067 amod double-stranded,probes
R5788 T8066 T8067 compound oligonucleotide,probes
R5789 T8067 T8073 nsubjpass probes,prepared
R5790 T8068 T8067 prep for,probes
R5791 T8069 T8070 compound gel,shift
R5792 T8070 T8071 compound shift,assays
R5793 T8071 T8068 pobj assays,for
R5794 T8072 T8073 auxpass were,prepared
R5795 T8073 T8063 npadvmod prepared,Radiolabelled
R5796 T8074 T8073 advcl using,prepared
R5797 T8075 T8077 nummod T4,kinase
R5798 T8076 T8077 compound polynucleotide,kinase
R5799 T8077 T8074 dobj kinase,using
R5800 T8078 T8077 cc and,kinase
R5801 T8079 T8083 compound [,ATP
R5802 T8080 T8083 compound γ-32P,ATP
R5803 T8081 T8083 compound ],ATP
R5804 T8082 T8083 punct -,ATP
R5805 T8083 T8077 conj ATP,kinase
R5806 T8084 T8073 punct .,prepared
R5807 T8085 T8090 nsubjpass RAW,prepared
R5808 T8086 T8088 nummod 264.7,extracts
R5809 T8087 T8088 amod nuclear,extracts
R5810 T8088 T8090 nsubjpass extracts,prepared
R5811 T8089 T8090 auxpass were,prepared
R5812 T8090 T8090 ROOT prepared,prepared
R5813 T8091 T8090 agent by,prepared
R5814 T8092 T8095 det the,method
R5815 T8093 T8094 compound detergent,lysis
R5816 T8094 T8095 compound lysis,method
R5817 T8095 T8091 pobj method,by
R5818 T8096 T8098 nmod [,]
R5819 T8097 T8098 nummod 41,]
R5820 T8098 T8095 appos ],method
R5821 T8099 T8090 punct .,prepared
R5822 T8100 T8159 nsubjpass DNA,performed
R5823 T8101 T8102 amod binding,reactions
R5824 T8102 T8100 dobj reactions,DNA
R5825 T8103 T8102 punct (,reactions
R5826 T8104 T8105 nummod 25,µl
R5827 T8105 T8102 appos µl,reactions
R5828 T8106 T8105 punct ),µl
R5829 T8107 T8105 acl containing,µl
R5830 T8108 T8111 nummod 10,pH
R5831 T8109 T8111 compound mM,pH
R5832 T8110 T8111 compound HEPES,pH
R5833 T8111 T8107 dobj pH,containing
R5834 T8112 T8111 nummod 7.9,pH
R5835 T8113 T8111 punct ",",pH
R5836 T8114 T8118 nummod 10,BSA
R5837 T8115 T8118 amod µg,BSA
R5838 T8116 T8118 nmod /,BSA
R5839 T8117 T8118 compound ml,BSA
R5840 T8118 T8111 appos BSA,pH
R5841 T8119 T8111 punct ",",pH
R5842 T8120 T8122 nummod 2,DTT
R5843 T8121 T8122 compound mM,DTT
R5844 T8122 T8111 conj DTT,pH
R5845 T8123 T8122 punct ",",DTT
R5846 T8124 T8125 nummod 30,%
R5847 T8125 T8126 compound %,glycerol
R5848 T8126 T8122 conj glycerol,DTT
R5849 T8127 T8126 punct ",",glycerol
R5850 T8128 T8129 nummod 20,%
R5851 T8129 T8130 compound %,Ficoll-400
R5852 T8130 T8126 appos Ficoll-400,glycerol
R5853 T8131 T8130 punct ",",Ficoll-400
R5854 T8132 T8134 nummod 1,poly
R5855 T8133 T8134 compound µg,poly
R5856 T8134 T8159 nsubjpass poly,performed
R5857 T8135 T8136 punct (,dI-dC
R5858 T8136 T8134 appos dI-dC,poly
R5859 T8137 T8136 punct ),dI-dC
R5860 T8138 T8134 punct ",",poly
R5861 T8139 T8140 nummod 6,µg
R5862 T8140 T8134 appos µg,poly
R5863 T8141 T8140 prep of,µg
R5864 T8142 T8143 amod nuclear,extracts
R5865 T8143 T8141 pobj extracts,of
R5866 T8144 T8140 cc and,µg
R5867 T8145 T8147 quantmod "10,000","20,000"
R5868 T8146 T8147 quantmod to,"20,000"
R5869 T8147 T8148 nummod "20,000",cpm
R5870 T8148 T8140 conj cpm,µg
R5871 T8149 T8153 punct (,ng
R5872 T8150 T8152 quantmod 0.05,0.2
R5873 T8151 T8152 quantmod to,0.2
R5874 T8152 T8153 nummod 0.2,ng
R5875 T8153 T8148 appos ng,cpm
R5876 T8154 T8153 punct ),ng
R5877 T8155 T8148 prep of,cpm
R5878 T8156 T8157 amod radiolabelled,probe
R5879 T8157 T8155 pobj probe,of
R5880 T8158 T8159 auxpass were,performed
R5881 T8159 T8159 ROOT performed,performed
R5882 T8160 T8159 prep for,performed
R5883 T8161 T8162 nummod 20,minutes
R5884 T8162 T8160 pobj minutes,for
R5885 T8163 T8162 prep at,minutes
R5886 T8164 T8165 compound room,temperature
R5887 T8165 T8163 pobj temperature,at
R5888 T8166 T8159 punct .,performed
R5889 T8167 T8169 amod Binding,products
R5890 T8168 T8169 compound reaction,products
R5891 T8169 T8171 nsubjpass products,resolved
R5892 T8170 T8171 auxpass were,resolved
R5893 T8171 T8171 ROOT resolved,resolved
R5894 T8172 T8171 agent by,resolved
R5895 T8173 T8172 pobj electrophoresis,by
R5896 T8174 T8171 prep at,resolved
R5897 T8175 T8176 compound room,temperature
R5898 T8176 T8174 pobj temperature,at
R5899 T8177 T8171 prep on,resolved
R5900 T8178 T8179 nummod 5,%
R5901 T8179 T8181 compound %,gels
R5902 T8180 T8181 compound polyacrylamide,gels
R5903 T8181 T8177 pobj gels,on
R5904 T8182 T8181 punct (,gels
R5905 T8183 T8184 nummod 29,∶
R5906 T8184 T8181 appos ∶,gels
R5907 T8185 T8184 nummod 1,∶
R5908 T8186 T8186 ROOT acrylamide,acrylamide
R5909 T8187 T8186 punct :,acrylamide
R5910 T8188 T8186 appos bis-acrylamide,acrylamide
R5911 T8189 T8190 punct (,Bio-Rad
R5912 T8190 T8188 appos Bio-Rad,bis-acrylamide
R5913 T8191 T8188 punct ),bis-acrylamide
R5914 T8192 T8186 punct ),acrylamide
R5915 T8193 T8186 prep in,acrylamide
R5916 T8194 T8195 nummod 1x,TBE
R5917 T8195 T8193 pobj TBE,in
R5918 T8196 T8186 prep at,acrylamide
R5919 T8197 T8196 pobj 10V/cm,at
R5920 T8198 T8186 punct .,acrylamide
R5921 T8199 T8205 prep For,were
R5922 T8200 T8201 amod supershift,assays
R5923 T8201 T8199 pobj assays,For
R5924 T8202 T8205 punct ",",were
R5925 T8203 T8204 amod nuclear,extracts
R5926 T8204 T8205 nsubj extracts,were
R5927 T8205 T8205 ROOT were,were
R5928 T8206 T8205 acomp pre-incubated,were
R5929 T8207 T8208 nummod 2,hrs
R5930 T8208 T8206 dobj hrs,pre-incubated
R5931 T8209 T8206 prep on,pre-incubated
R5932 T8210 T8209 pobj ice,on
R5933 T8211 T8206 prep with,pre-incubated
R5934 T8212 T8213 nummod 4,µg
R5935 T8213 T8211 pobj µg,with
R5936 T8214 T8213 prep of,µg
R5937 T8215 T8217 amod specific,antibody
R5938 T8216 T8217 compound C/EBP,antibody
R5939 T8217 T8214 pobj antibody,of
R5940 T8218 T8205 punct .,were
R5941 T8219 T8221 nsubjpass Antibodies,purchased
R5942 T8220 T8221 auxpass were,purchased
R5943 T8221 T8221 ROOT purchased,purchased
R5944 T8222 T8221 prep from,purchased
R5945 T8223 T8224 compound Santa,Cruz
R5946 T8224 T8222 pobj Cruz,from
R5947 T8225 T8228 punct :,α
R5948 T8226 T8228 amod anti-C/EBP,α
R5949 T8227 T8228 punct -,α
R5950 T8228 T8249 nmod α,ε
R5951 T8229 T8230 punct (,sc-61
R5952 T8230 T8228 parataxis sc-61,α
R5953 T8231 T8230 punct ),sc-61
R5954 T8232 T8228 punct ",",α
R5955 T8233 T8235 amod anti-C/EBP,β
R5956 T8234 T8235 punct -,β
R5957 T8235 T8228 appos β,α
R5958 T8236 T8237 punct (,sc-150
R5959 T8237 T8235 appos sc-150,β
R5960 T8238 T8237 punct ),sc-150
R5961 T8239 T8235 punct ",",β
R5962 T8240 T8242 amod anti-C/EBP,δ
R5963 T8241 T8242 punct -,δ
R5964 T8242 T8228 appos δ,α
R5965 T8243 T8244 punct (,sc-151
R5966 T8244 T8242 appos sc-151,δ
R5967 T8245 T8244 punct ),sc-151
R5968 T8246 T8244 cc and,sc-151
R5969 T8247 T8249 amod anti-C/EBP,ε
R5970 T8248 T8249 punct -,ε
R5971 T8249 T8221 npadvmod ε,purchased
R5972 T8250 T8251 punct (,sc-158
R5973 T8251 T8249 appos sc-158,ε
R5974 T8252 T8251 punct ),sc-158
R5975 T8253 T8221 punct .,purchased

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8010 902-903 -RRB- denotes )
T8009 896-902 NN denotes sc-158
T8008 895-896 -LRB- denotes (
T8007 882-894 JJ denotes anti-C/EBP-ε
T8006 878-881 CC denotes and
T8005 876-877 -RRB- denotes )
T8004 870-876 NN denotes sc-151
T8003 869-870 -LRB- denotes (
T8002 856-868 JJ denotes anti-C/EBP-δ
T8001 854-855 -COMMA- denotes ,
T8000 853-854 -RRB- denotes )
T7999 847-853 NN denotes sc-150
T7998 846-847 -LRB- denotes (
T7997 833-845 JJ denotes anti-C/EBP-β
T7996 831-832 -COMMA- denotes ,
T7995 830-831 -RRB- denotes )
T7994 825-830 NN denotes sc-61
T7993 824-825 -LRB- denotes (
T7992 811-823 JJ denotes anti-C/EBP-α
T7991 809-810 -COLON- denotes :
T7990 805-809 NNP denotes Cruz
T7989 799-804 NNP denotes Santa
T7988 794-798 IN denotes from
T7987 784-793 VB denotes purchased
T7986 779-783 VB denotes were
T7985 768-778 NN denotes Antibodies
T7984 758-766 NN denotes antibody
T7983 752-757 NN denotes C/EBP
T7982 743-751 JJ denotes specific
T7981 740-742 IN denotes of
T7980 737-739 NN denotes µg
T7979 735-736 CD denotes 4
T7978 730-734 IN denotes with
T7977 726-729 NN denotes ice
T7976 723-725 IN denotes on
T7975 719-722 NN denotes hrs
T7974 717-718 CD denotes 2
T7973 703-716 JJ denotes pre-incubated
T7972 698-702 VB denotes were
T7971 689-697 NN denotes extracts
T7970 681-688 JJ denotes nuclear
T7969 679-680 -COMMA- denotes ,
T7968 673-679 NN denotes assays
T7967 662-672 NN denotes supershift
T7966 658-661 IN denotes For
T7965 650-656 NN denotes 10V/cm
T7964 647-649 IN denotes at
T7963 643-646 NN denotes TBE
T7962 640-642 NN denotes 1x
T7961 637-639 IN denotes in
T7960 635-636 -RRB- denotes )
T7959 634-635 -RRB- denotes )
T7958 627-634 NN denotes Bio-Rad
T7957 626-627 -LRB- denotes (
T7956 611-625 NN denotes bis-acrylamide
T7955 610-611 -COLON- denotes :
T7954 600-610 NN denotes acrylamide
T7953 595-599 CD denotes 29∶1
T7952 594-595 -LRB- denotes (
T7951 589-593 NN denotes gels
T7950 574-588 NN denotes polyacrylamide
T7949 572-573 NN denotes %
T7948 571-572 CD denotes 5
T7947 568-570 IN denotes on
T7946 556-567 NN denotes temperature
T7945 551-555 NN denotes room
T7944 548-550 IN denotes at
T7943 532-547 NN denotes electrophoresis
T7942 529-531 IN denotes by
T7941 520-528 VB denotes resolved
T7940 515-519 VB denotes were
T7939 506-514 NN denotes products
T7938 497-505 NN denotes reaction
T7937 489-496 NN denotes Binding
T7936 476-487 NN denotes temperature
T7935 471-475 NN denotes room
T7934 468-470 IN denotes at
T7933 460-467 NN denotes minutes
T7932 457-459 CD denotes 20
T7931 453-456 IN denotes for
T7930 443-452 VB denotes performed
T7929 438-442 VB denotes were
T7928 432-437 NN denotes probe
T7927 418-431 VB denotes radiolabelled
T7926 415-417 IN denotes of
T7925 413-414 -RRB- denotes )
T7924 411-413 NN denotes ng
T7923 407-410 CD denotes 0.2
T7922 404-406 TO denotes to
T7921 399-403 CD denotes 0.05
T7920 398-399 -LRB- denotes (
T7919 394-397 NN denotes cpm
T7918 387-393 CD denotes 20,000
T7917 384-386 TO denotes to
T7916 377-383 CD denotes 10,000
T7915 373-376 CC denotes and
T7914 364-372 NN denotes extracts
T7913 356-363 JJ denotes nuclear
T7912 353-355 IN denotes of
T7911 350-352 NN denotes µg
T7910 348-349 CD denotes 6
T7909 346-347 -COMMA- denotes ,
T7908 345-346 -RRB- denotes )
T7907 340-345 NN denotes dI-dC
T7906 339-340 -LRB- denotes (
T7905 334-338 NN denotes poly
T7904 331-333 NN denotes µg
T7903 329-330 CD denotes 1
T7902 327-328 -COMMA- denotes ,
T7901 317-327 NN denotes Ficoll-400
T7900 315-316 NN denotes %
T7899 313-315 CD denotes 20
T7898 311-312 -COMMA- denotes ,
T7897 303-311 NN denotes glycerol
T7896 301-302 NN denotes %
T7895 299-301 CD denotes 30
T7894 297-298 -COMMA- denotes ,
T7893 294-297 NN denotes DTT
T7892 291-293 NN denotes mM
T7891 289-290 CD denotes 2
T7890 287-288 -COMMA- denotes ,
T7889 284-287 NNP denotes BSA
T7888 278-283 NN denotes µg/ml
T7887 275-277 CD denotes 10
T7886 273-274 -COMMA- denotes ,
T7885 270-273 CD denotes 7.9
T7884 267-269 NN denotes pH
T7883 261-266 NN denotes HEPES
T7882 258-260 NN denotes mM
T7881 255-257 CD denotes 10
T7880 244-254 VB denotes containing
T7879 242-243 -RRB- denotes )
T7878 240-242 NN denotes µl
T7877 237-239 CD denotes 25
T7876 236-237 -LRB- denotes (
T7875 226-235 NN denotes reactions
T7874 218-225 NN denotes binding
T7873 214-217 NN denotes DNA
T7872 211-212 -RRB- denotes ]
T7871 209-211 CD denotes 41
T7870 208-209 -LRB- denotes [
T7869 201-207 NN denotes method
T7868 195-200 NN denotes lysis
T7867 185-194 JJ denotes detergent
T7866 181-184 DT denotes the
T7865 178-180 IN denotes by
T7864 169-177 VB denotes prepared
T7863 164-168 VB denotes were
T7862 155-163 NN denotes extracts
T7861 147-154 JJ denotes nuclear
T7860 141-146 CD denotes 264.7
T7859 137-140 NN denotes RAW
T7858 131-135 NN denotes -ATP
T7857 130-131 -RRB- denotes ]
T7856 125-130 NN denotes γ-32P
T7855 124-125 -LRB- denotes [
T7854 120-123 CC denotes and
T7853 113-119 NN denotes kinase
T7852 98-112 NN denotes polynucleotide
T7851 95-97 NN denotes T4
T7850 89-94 VB denotes using
T7849 80-88 VB denotes prepared
T7848 75-79 VB denotes were
T7847 68-74 NN denotes assays
T7846 62-67 NN denotes shift
T7845 58-61 NN denotes gel
T7844 54-57 IN denotes for
T7843 47-53 NN denotes probes
T7842 31-46 NN denotes oligonucleotide
T7841 15-30 JJ denotes double-stranded
T7840 13-14 -COMMA- denotes ,
T7839 0-13 VB denotes Radiolabelled
R5607 T7843 T7839 arg1Of probes,Radiolabelled
R5608 T7843 T7841 arg1Of probes,double-stranded
R5609 T7843 T7842 arg1Of probes,oligonucleotide
R5610 T7843 T7844 arg1Of probes,for
R5611 T7843 T7848 arg1Of probes,were
R5612 T7843 T7849 arg2Of probes,prepared
R5613 T7847 T7844 arg2Of assays,for
R5614 T7847 T7845 arg1Of assays,gel
R5615 T7847 T7846 arg1Of assays,shift
R5616 T7849 T7839 modOf prepared,Radiolabelled
R5617 T7849 T7840 arg1Of prepared,","
R5618 T7849 T7848 arg2Of prepared,were
R5619 T7849 T7850 modOf prepared,using
R5620 T7853 T7851 arg1Of kinase,T4
R5621 T7853 T7852 arg1Of kinase,polynucleotide
R5622 T7853 T7854 arg1Of kinase,and
R5623 T7854 T7850 arg2Of and,using
R5624 T7856 T7855 arg2Of γ-32P,[
R5625 T7857 T7855 arg3Of ],[
R5626 T7858 T7854 arg2Of -ATP,and
R5627 T7858 T7855 arg1Of -ATP,[
R5628 T7862 T7859 arg1Of extracts,RAW
R5629 T7862 T7860 arg1Of extracts,264.7
R5630 T7862 T7861 arg1Of extracts,nuclear
R5631 T7862 T7863 arg1Of extracts,were
R5632 T7862 T7864 arg2Of extracts,prepared
R5633 T7864 T7863 arg2Of prepared,were
R5634 T7864 T7870 arg1Of prepared,[
R5635 T7869 T7864 arg1Of method,prepared
R5636 T7869 T7865 arg2Of method,by
R5637 T7869 T7866 arg1Of method,the
R5638 T7869 T7867 arg1Of method,detergent
R5639 T7869 T7868 arg1Of method,lysis
R5640 T7871 T7870 arg2Of 41,[
R5641 T7872 T7870 arg3Of ],[
R5642 T7875 T7873 arg1Of reactions,DNA
R5643 T7875 T7874 arg1Of reactions,binding
R5644 T7875 T7876 arg1Of reactions,(
R5645 T7875 T7880 arg1Of reactions,containing
R5646 T7875 T7890 arg1Of reactions,","
R5647 T7875 T7909 arg1Of reactions,","
R5648 T7878 T7876 arg2Of µl,(
R5649 T7878 T7877 arg1Of µl,25
R5650 T7879 T7876 arg3Of ),(
R5651 T7881 T7882 arg1Of 10,mM
R5652 T7885 T7886 arg1Of 7.9,","
R5653 T7888 T7886 arg2Of µg/ml,","
R5654 T7888 T7887 arg1Of µg/ml,10
R5655 T7889 T7880 arg2Of BSA,containing
R5656 T7889 T7881 arg1Of BSA,10
R5657 T7889 T7883 arg1Of BSA,HEPES
R5658 T7889 T7884 arg1Of BSA,pH
R5659 T7889 T7885 arg1Of BSA,7.9
R5660 T7889 T7888 arg1Of BSA,µg/ml
R5661 T7891 T7892 arg1Of 2,mM
R5662 T7893 T7891 arg1Of DTT,2
R5663 T7893 T7894 arg1Of DTT,","
R5664 T7894 T7898 arg1Of ",",","
R5665 T7895 T7896 arg1Of 30,%
R5666 T7897 T7894 arg2Of glycerol,","
R5667 T7897 T7895 arg1Of glycerol,30
R5668 T7898 T7902 arg1Of ",",","
R5669 T7899 T7900 arg1Of 20,%
R5670 T7901 T7898 arg2Of Ficoll-400,","
R5671 T7901 T7899 arg1Of Ficoll-400,20
R5672 T7902 T7890 arg2Of ",",","
R5673 T7905 T7902 arg2Of poly,","
R5674 T7905 T7903 arg1Of poly,1
R5675 T7905 T7904 arg1Of poly,µg
R5676 T7905 T7906 arg1Of poly,(
R5677 T7907 T7906 arg2Of dI-dC,(
R5678 T7908 T7906 arg3Of ),(
R5679 T7909 T7929 arg1Of ",",were
R5680 T7909 T7930 arg2Of ",",performed
R5681 T7911 T7910 arg1Of µg,6
R5682 T7911 T7912 arg1Of µg,of
R5683 T7911 T7915 arg1Of µg,and
R5684 T7914 T7912 arg2Of extracts,of
R5685 T7914 T7913 arg1Of extracts,nuclear
R5686 T7915 T7909 arg2Of and,","
R5687 T7915 T7926 arg1Of and,of
R5688 T7916 T7917 arg1Of "10,000",to
R5689 T7918 T7917 arg2Of "20,000",to
R5690 T7919 T7915 arg2Of cpm,and
R5691 T7919 T7916 arg1Of cpm,"10,000"
R5692 T7919 T7920 arg1Of cpm,(
R5693 T7921 T7922 arg1Of 0.05,to
R5694 T7923 T7922 arg2Of 0.2,to
R5695 T7924 T7920 arg2Of ng,(
R5696 T7924 T7921 arg1Of ng,0.05
R5697 T7925 T7920 arg3Of ),(
R5698 T7928 T7926 arg2Of probe,of
R5699 T7928 T7927 arg2Of probe,radiolabelled
R5700 T7930 T7929 arg2Of performed,were
R5701 T7930 T7931 arg1Of performed,for
R5702 T7933 T7931 arg2Of minutes,for
R5703 T7933 T7932 arg1Of minutes,20
R5704 T7933 T7934 arg1Of minutes,at
R5705 T7936 T7934 arg2Of temperature,at
R5706 T7936 T7935 arg1Of temperature,room
R5707 T7939 T7937 arg1Of products,Binding
R5708 T7939 T7938 arg1Of products,reaction
R5709 T7939 T7940 arg1Of products,were
R5710 T7939 T7941 arg2Of products,resolved
R5711 T7941 T7940 arg2Of resolved,were
R5712 T7941 T7942 arg1Of resolved,by
R5713 T7943 T7942 arg2Of electrophoresis,by
R5714 T7943 T7944 arg1Of electrophoresis,at
R5715 T7946 T7944 arg2Of temperature,at
R5716 T7946 T7945 arg1Of temperature,room
R5717 T7946 T7947 arg1Of temperature,on
R5718 T7946 T7961 arg1Of temperature,in
R5719 T7948 T7949 arg1Of 5,%
R5720 T7951 T7947 arg2Of gels,on
R5721 T7951 T7948 arg1Of gels,5
R5722 T7951 T7950 arg1Of gels,polyacrylamide
R5723 T7951 T7952 arg1Of gels,(
R5724 T7954 T7953 arg1Of acrylamide,29∶1
R5725 T7954 T7955 arg1Of acrylamide,:
R5726 T7955 T7952 arg2Of :,(
R5727 T7956 T7955 arg2Of bis-acrylamide,:
R5728 T7956 T7957 arg1Of bis-acrylamide,(
R5729 T7958 T7957 arg2Of Bio-Rad,(
R5730 T7959 T7957 arg3Of ),(
R5731 T7960 T7952 arg3Of ),(
R5732 T7963 T7961 arg2Of TBE,in
R5733 T7963 T7962 arg1Of TBE,1x
R5734 T7963 T7964 arg1Of TBE,at
R5735 T7965 T7964 arg2Of 10V/cm,at
R5736 T7968 T7966 arg2Of assays,For
R5737 T7968 T7967 arg1Of assays,supershift
R5738 T7971 T7970 arg1Of extracts,nuclear
R5739 T7971 T7972 arg1Of extracts,were
R5740 T7972 T7966 arg1Of were,For
R5741 T7972 T7969 arg1Of were,","
R5742 T7974 T7973 arg1Of 2,pre-incubated
R5743 T7975 T7972 arg2Of hrs,were
R5744 T7975 T7974 arg1Of hrs,2
R5745 T7975 T7976 arg1Of hrs,on
R5746 T7977 T7976 arg2Of ice,on
R5747 T7977 T7978 arg1Of ice,with
R5748 T7980 T7978 arg2Of µg,with
R5749 T7980 T7979 arg1Of µg,4
R5750 T7980 T7981 arg1Of µg,of
R5751 T7984 T7981 arg2Of antibody,of
R5752 T7984 T7982 arg1Of antibody,specific
R5753 T7984 T7983 arg1Of antibody,C/EBP
R5754 T7985 T7986 arg1Of Antibodies,were
R5755 T7985 T7987 arg2Of Antibodies,purchased
R5756 T7987 T7986 arg2Of purchased,were
R5757 T7987 T7988 arg1Of purchased,from
R5758 T7990 T7988 arg2Of Cruz,from
R5759 T7990 T7989 arg1Of Cruz,Santa
R5760 T7990 T7991 arg1Of Cruz,:
R5761 T7992 T7993 arg1Of anti-C/EBP-α,(
R5762 T7992 T7996 arg1Of anti-C/EBP-α,","
R5763 T7994 T7993 arg2Of sc-61,(
R5764 T7995 T7993 arg3Of ),(
R5765 T7996 T8001 arg1Of ",",","
R5766 T7997 T7996 arg2Of anti-C/EBP-β,","
R5767 T7997 T7998 arg1Of anti-C/EBP-β,(
R5768 T7999 T7998 arg2Of sc-150,(
R5769 T8000 T7998 arg3Of ),(
R5770 T8001 T7991 arg2Of ",",:
R5771 T8002 T8003 arg1Of anti-C/EBP-δ,(
R5772 T8002 T8006 arg1Of anti-C/EBP-δ,and
R5773 T8004 T8003 arg2Of sc-151,(
R5774 T8005 T8003 arg3Of ),(
R5775 T8006 T8001 arg2Of and,","
R5776 T8007 T8006 arg2Of anti-C/EBP-ε,and
R5777 T8007 T8008 arg1Of anti-C/EBP-ε,(
R5778 T8009 T8008 arg2Of sc-158,(
R5779 T8010 T8008 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7825 95-119 Protein denotes T4 polynucleotide kinase

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8012 838-845 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β

GO-BP

Id Subject Object Predicate Lexical cue
T7826 195-200 http://purl.obolibrary.org/obo/GO_0019835 denotes lysis

GO-MF

Id Subject Object Predicate Lexical cue
T7830 758-766 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T7829 489-496 http://purl.obolibrary.org/obo/GO_0005488 denotes Binding
T7828 218-225 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7827 214-225 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding

GO-CC

Id Subject Object Predicate Lexical cue
T7832 758-766 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T7831 758-766 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody

sentences

Id Subject Object Predicate Lexical cue
T7823 768-904 Sentence denotes Antibodies were purchased from Santa Cruz: anti-C/EBP-α (sc-61), anti-C/EBP-β (sc-150), anti-C/EBP-δ (sc-151) and anti-C/EBP-ε (sc-158).
T7822 658-767 Sentence denotes For supershift assays, nuclear extracts were pre-incubated 2 hrs on ice with 4 µg of specific C/EBP antibody.
T7821 489-657 Sentence denotes Binding reaction products were resolved by electrophoresis at room temperature on 5% polyacrylamide gels (29∶1 acrylamide:bis-acrylamide (Bio-Rad)) in 1x TBE at 10V/cm.
T7820 214-488 Sentence denotes DNA binding reactions (25 µl) containing 10 mM HEPES pH 7.9, 10 µg/ml BSA, 2 mM DTT, 30% glycerol, 20% Ficoll-400, 1 µg poly (dI-dC), 6 µg of nuclear extracts and 10,000 to 20,000 cpm (0.05 to 0.2 ng) of radiolabelled probe were performed for 20 minutes at room temperature.
T7819 137-213 Sentence denotes RAW 264.7 nuclear extracts were prepared by the detergent lysis method [41].
T7818 0-136 Sentence denotes Radiolabelled, double-stranded oligonucleotide probes for gel shift assays were prepared using T4 polynucleotide kinase and [γ-32P]-ATP.
T92 0-136 Sentence denotes Radiolabelled, double-stranded oligonucleotide probes for gel shift assays were prepared using T4 polynucleotide kinase and [γ-32P]-ATP.
T93 137-213 Sentence denotes RAW 264.7 nuclear extracts were prepared by the detergent lysis method [41].
T94 214-488 Sentence denotes DNA binding reactions (25 µl) containing 10 mM HEPES pH 7.9, 10 µg/ml BSA, 2 mM DTT, 30% glycerol, 20% Ficoll-400, 1 µg poly (dI-dC), 6 µg of nuclear extracts and 10,000 to 20,000 cpm (0.05 to 0.2 ng) of radiolabelled probe were performed for 20 minutes at room temperature.
T95 489-657 Sentence denotes Binding reaction products were resolved by electrophoresis at room temperature on 5% polyacrylamide gels (29∶1 acrylamide:bis-acrylamide (Bio-Rad)) in 1x TBE at 10V/cm.
T96 658-767 Sentence denotes For supershift assays, nuclear extracts were pre-incubated 2 hrs on ice with 4 µg of specific C/EBP antibody.
T97 768-904 Sentence denotes Antibodies were purchased from Santa Cruz: anti-C/EBP-α (sc-61), anti-C/EBP-β (sc-150), anti-C/EBP-δ (sc-151) and anti-C/EBP-ε (sc-158).

simple1

Id Subject Object Predicate Lexical cue
T7834 95-119 Protein denotes T4 polynucleotide kinase

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T8011 95-119 Protein denotes T4 polynucleotide kinase

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8015 95-119 Protein denotes T4 polynucleotide kinase

DLUT931

Id Subject Object Predicate Lexical cue
T8013 95-119 Protein denotes T4 polynucleotide kinase

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8058 768-809 Binding denotes Antibodies were purchased from Santa Cruz
T8057 726-766 Entity denotes ice with 4 µg of specific C/EBP antibody
T8056 137-163 Entity denotes RAW 264.7 nuclear extracts
T8055 394-397 Protein denotes cpm
T8054 299-311 Entity denotes 30% glycerol
T8053 356-372 Entity denotes nuclear extracts
T8052 615-625 Entity denotes acrylamide
T8051 255-273 Entity denotes 10 mM HEPES pH 7.9
T8050 703-766 Protein denotes pre-incubated 2 hrs on ice with 4 µg of specific C/EBP antibody
T8049 799-804 Protein denotes Santa
T8048 80-119 Protein denotes prepared using T4 polynucleotide kinase
T8047 856-877 Protein denotes anti-C/EBP-δ (sc-151)
T8046 681-697 Entity denotes nuclear extracts
T8045 752-757 Protein denotes C/EBP
T8044 15-46 Entity denotes double-stranded oligonucleotide
T8043 662-679 Entity denotes supershift assays
T8042 598-610 Entity denotes 1 acrylamide
T8041 768-778 Entity denotes Antibodies
T8040 329-346 Entity denotes 1 µg poly (dI-dC)
T8039 611-625 Protein denotes bis-acrylamide
T8038 574-588 Entity denotes polyacrylamide
T8037 95-97 Entity denotes T4
T8036 740-766 Entity denotes of specific C/EBP antibody
T8035 284-312 Entity denotes BSA, 2 mM DTT, 30% glycerol,
T8034 611-625 Entity denotes bis-acrylamide
T8033 571-593 Entity denotes 5% polyacrylamide gels
T8032 735-766 Entity denotes 4 µg of specific C/EBP antibody
T8031 131-135 Entity denotes -ATP
T8030 178-212 Entity denotes by the detergent lysis method [41]
R5780 T8041 T8058 themeOf Antibodies,Antibodies were purchased from Santa Cruz

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8022 882-894 Protein denotes anti-C/EBP-ε
T8021 856-868 Protein denotes anti-C/EBP-δ
T8020 833-845 Protein denotes anti-C/EBP-β
T8019 811-823 Protein denotes anti-C/EBP-α
T8018 752-766 Protein denotes C/EBP antibody
T8017 631-634 Protein denotes Rad
T8016 95-119 Protein denotes T4 polynucleotide kinase

testone

Id Subject Object Predicate Lexical cue
T7814 95-119 Protein denotes T4 polynucleotide kinase

test3

Id Subject Object Predicate Lexical cue
T7816 95-119 Protein denotes T4 polynucleotide kinase
T7815 95-119 Protein denotes T4 polynucleotide kinase