> top > docs > PMC:3589482 > spans > 13058-13321 > annotations

PMC:3589482 / 13058-13321 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7058 262-263 . denotes .
T7057 261-262 -RRB- denotes )
T7056 251-261 NNP denotes Invitrogen
T7055 250-251 -LRB- denotes (
T7054 242-249 NN denotes reagent
T7053 237-241 CD denotes 2000
T7052 223-236 NNP denotes Lipofectamine
T7051 217-222 VBG denotes using
T7050 215-216 -RRB- denotes )
T7049 213-215 NN denotes µg
T7048 208-212 CD denotes 0.25
T7047 207-208 -LRB- denotes (
T7046 199-206 NN denotes plasmid
T7045 190-198 NN denotes envelope
T7044 179-189 NNP denotes pCMV-VSV-G
T7043 175-178 CC denotes and
T7042 173-174 , denotes ,
T7041 172-173 -RRB- denotes )
T7040 170-172 NN denotes µg
T7039 165-169 CD denotes 0.75
T7038 164-165 -LRB- denotes (
T7037 156-163 NN denotes plasmid
T7036 146-155 NN denotes packaging
T7035 141-145 NN denotes dvpr
T7034 139-141 CD denotes .2
T7033 131-139 JJ denotes pCMV-ΔR8
T7032 129-130 , denotes ,
T7031 128-129 -RRB- denotes )
T7030 126-128 NN denotes µg
T7029 124-125 CD denotes 1
T7028 123-124 -LRB- denotes (
T7027 115-122 NN denotes plasmid
T7026 104-114 NN denotes expression
T7025 98-103 NN denotes shRNA
T7024 93-97 DT denotes each
T7023 91-92 : denotes :
T7022 83-91 NNS denotes plasmids
T7021 80-82 IN denotes of
T7020 72-79 NN denotes mixture
T7019 70-71 DT denotes a
T7018 65-69 IN denotes with
T7017 53-64 VBN denotes transfected
T7016 48-52 VBD denotes were
T7015 42-47 NNS denotes cells
T7014 33-41 JJ denotes HEK-293T
T7013 31-32 , denotes ,
T7012 22-31 NNS denotes particles
T7011 11-21 JJ denotes lentiviral
T7010 3-10 VB denotes produce
T7009 0-2 TO denotes To
R5051 T7009 T7010 aux To,produce
R5052 T7010 T7017 advcl produce,transfected
R5053 T7011 T7012 amod lentiviral,particles
R5054 T7012 T7010 dobj particles,produce
R5055 T7013 T7017 punct ",",transfected
R5056 T7014 T7015 amod HEK-293T,cells
R5057 T7015 T7017 nsubjpass cells,transfected
R5058 T7016 T7017 auxpass were,transfected
R5059 T7017 T7017 ROOT transfected,transfected
R5060 T7018 T7017 prep with,transfected
R5061 T7019 T7020 det a,mixture
R5062 T7020 T7018 pobj mixture,with
R5063 T7021 T7020 prep of,mixture
R5064 T7022 T7021 pobj plasmids,of
R5065 T7023 T7017 punct :,transfected
R5066 T7024 T7027 det each,plasmid
R5067 T7025 T7027 amod shRNA,plasmid
R5068 T7026 T7027 compound expression,plasmid
R5069 T7027 T7027 ROOT plasmid,plasmid
R5070 T7028 T7030 punct (,µg
R5071 T7029 T7030 nummod 1,µg
R5072 T7030 T7027 appos µg,plasmid
R5073 T7031 T7027 punct ),plasmid
R5074 T7032 T7027 punct ",",plasmid
R5075 T7033 T7037 amod pCMV-ΔR8,plasmid
R5076 T7034 T7037 nummod .2,plasmid
R5077 T7035 T7037 compound dvpr,plasmid
R5078 T7036 T7037 compound packaging,plasmid
R5079 T7037 T7027 conj plasmid,plasmid
R5080 T7038 T7037 punct (,plasmid
R5081 T7039 T7040 nummod 0.75,µg
R5082 T7040 T7037 appos µg,plasmid
R5083 T7041 T7037 punct ),plasmid
R5084 T7042 T7037 punct ",",plasmid
R5085 T7043 T7017 cc and,transfected
R5086 T7044 T7046 compound pCMV-VSV-G,plasmid
R5087 T7045 T7046 compound envelope,plasmid
R5088 T7046 T7046 ROOT plasmid,plasmid
R5089 T7047 T7046 punct (,plasmid
R5090 T7048 T7049 nummod 0.25,µg
R5091 T7049 T7046 appos µg,plasmid
R5092 T7050 T7046 punct ),plasmid
R5093 T7051 T7017 advcl using,transfected
R5094 T7052 T7054 nmod Lipofectamine,reagent
R5095 T7053 T7054 nummod 2000,reagent
R5096 T7054 T7051 dobj reagent,using
R5097 T7055 T7054 punct (,reagent
R5098 T7056 T7054 appos Invitrogen,reagent
R5099 T7057 T7054 punct ),reagent
R5100 T7058 T7017 punct .,transfected

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6788 261-262 -RRB- denotes )
T6787 251-261 NN denotes Invitrogen
T6786 250-251 -LRB- denotes (
T6785 242-249 NN denotes reagent
T6784 237-241 CD denotes 2000
T6783 223-236 NN denotes Lipofectamine
T6782 217-222 VB denotes using
T6781 215-216 -RRB- denotes )
T6780 213-215 NN denotes µg
T6779 208-212 CD denotes 0.25
T6778 207-208 -LRB- denotes (
T6777 199-206 NN denotes plasmid
T6776 190-198 NN denotes envelope
T6775 179-189 NN denotes pCMV-VSV-G
T6774 175-178 CC denotes and
T6773 173-174 -COMMA- denotes ,
T6772 172-173 -RRB- denotes )
T6771 170-172 NN denotes µg
T6770 165-169 CD denotes 0.75
T6769 164-165 -LRB- denotes (
T6768 156-163 NN denotes plasmid
T6767 146-155 NN denotes packaging
T6766 131-145 NN denotes pCMV-ΔR8.2dvpr
T6765 129-130 -COMMA- denotes ,
T6764 128-129 -RRB- denotes )
T6763 126-128 NN denotes µg
T6762 124-125 CD denotes 1
T6761 123-124 -LRB- denotes (
T6760 115-122 NN denotes plasmid
T6759 104-114 NN denotes expression
T6758 98-103 NN denotes shRNA
T6757 93-97 DT denotes each
T6756 91-92 -COLON- denotes :
T6755 83-91 NN denotes plasmids
T6754 80-82 IN denotes of
T6753 72-79 NN denotes mixture
T6752 70-71 DT denotes a
T6751 65-69 IN denotes with
T6750 53-64 VB denotes transfected
T6749 48-52 VB denotes were
T6748 42-47 NN denotes cells
T6747 33-41 NN denotes HEK-293T
T6746 31-32 -COMMA- denotes ,
T6745 22-31 NN denotes particles
T6744 11-21 JJ denotes lentiviral
T6743 3-10 VB denotes produce
T6742 0-2 TO denotes To
R4823 T6743 T6742 arg1Of produce,To
R4824 T6745 T6743 arg2Of particles,produce
R4825 T6745 T6744 arg1Of particles,lentiviral
R4826 T6748 T6743 arg1Of cells,produce
R4827 T6748 T6747 arg1Of cells,HEK-293T
R4828 T6748 T6749 arg1Of cells,were
R4829 T6748 T6750 arg2Of cells,transfected
R4830 T6748 T6782 arg1Of cells,using
R4831 T6750 T6742 modOf transfected,To
R4832 T6750 T6746 arg1Of transfected,","
R4833 T6750 T6749 arg2Of transfected,were
R4834 T6750 T6751 arg1Of transfected,with
R4835 T6750 T6782 modOf transfected,using
R4836 T6753 T6751 arg2Of mixture,with
R4837 T6753 T6752 arg1Of mixture,a
R4838 T6753 T6754 arg1Of mixture,of
R4839 T6753 T6756 arg1Of mixture,:
R4840 T6755 T6754 arg2Of plasmids,of
R4841 T6760 T6758 arg1Of plasmid,shRNA
R4842 T6760 T6759 arg1Of plasmid,expression
R4843 T6760 T6761 arg1Of plasmid,(
R4844 T6760 T6765 arg1Of plasmid,","
R4845 T6763 T6761 arg2Of µg,(
R4846 T6763 T6762 arg1Of µg,1
R4847 T6764 T6761 arg3Of ),(
R4848 T6765 T6774 arg1Of ",",and
R4849 T6768 T6765 arg2Of plasmid,","
R4850 T6768 T6766 arg1Of plasmid,pCMV-ΔR8.2dvpr
R4851 T6768 T6767 arg1Of plasmid,packaging
R4852 T6768 T6769 arg1Of plasmid,(
R4853 T6771 T6769 arg2Of µg,(
R4854 T6771 T6770 arg1Of µg,0.75
R4855 T6772 T6769 arg3Of ),(
R4856 T6774 T6756 arg2Of and,:
R4857 T6774 T6757 arg1Of and,each
R4858 T6774 T6773 arg1Of and,","
R4859 T6777 T6774 arg2Of plasmid,and
R4860 T6777 T6775 arg1Of plasmid,pCMV-VSV-G
R4861 T6777 T6776 arg1Of plasmid,envelope
R4862 T6777 T6778 arg1Of plasmid,(
R4863 T6780 T6778 arg2Of µg,(
R4864 T6780 T6779 arg1Of µg,0.25
R4865 T6781 T6778 arg3Of ),(
R4866 T6785 T6782 arg2Of reagent,using
R4867 T6785 T6783 arg1Of reagent,Lipofectamine
R4868 T6785 T6784 arg1Of reagent,2000
R4869 T6785 T6786 arg1Of reagent,(
R4870 T6787 T6786 arg2Of Invitrogen,(
R4871 T6788 T6786 arg3Of ),(

GO-CC

Id Subject Object Predicate Lexical cue
T6656 190-198 http://purl.obolibrary.org/obo/GO_0009274 denotes envelope
T6654 42-47 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T6635 0-263 Sentence denotes To produce lentiviral particles, HEK-293T cells were transfected with a mixture of plasmids: each shRNA expression plasmid (1 µg), pCMV-ΔR8.2dvpr packaging plasmid (0.75 µg), and pCMV-VSV-G envelope plasmid (0.25 µg) using Lipofectamine 2000 reagent (Invitrogen).
T79 0-263 Sentence denotes To produce lentiviral particles, HEK-293T cells were transfected with a mixture of plasmids: each shRNA expression plasmid (1 µg), pCMV-ΔR8.2dvpr packaging plasmid (0.75 µg), and pCMV-VSV-G envelope plasmid (0.25 µg) using Lipofectamine 2000 reagent (Invitrogen).

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T6923 223-262 Entity denotes Lipofectamine 2000 reagent (Invitrogen)
T6914 11-32 Entity denotes lentiviral particles,
T6909 65-91 Entity denotes with a mixture of plasmids

testone

Id Subject Object Predicate Lexical cue
T6619 3-10 Gene_expression denotes produce