PMC:3589482 / 126-348
Annnotations
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T807 | 210-220 | NN | denotes | macrophage |
| T806 | 208-209 | , | denotes | , |
| T805 | 200-208 | NN | denotes | immunity |
| T804 | 193-199 | NN | denotes | innate |
| T803 | 190-192 | IN | denotes | of |
| T802 | 179-189 | NN | denotes | modulation |
| T801 | 175-178 | DT | denotes | the |
| T800 | 172-174 | TO | denotes | to |
| T799 | 165-171 | VBN | denotes | linked |
| T798 | 162-164 | VBZ | denotes | is |
| T797 | 158-161 | CC | denotes | and |
| T796 | 150-157 | NNS | denotes | stimuli |
| T795 | 137-149 | JJ | denotes | inflammatory |
| T794 | 134-136 | TO | denotes | to |
| T793 | 125-133 | NN | denotes | response |
| T792 | 122-124 | IN | denotes | in |
| T791 | 110-121 | NNS | denotes | macrophages |
| T790 | 107-109 | IN | denotes | in |
| T789 | 99-106 | VBN | denotes | induced |
| T788 | 92-98 | RB | denotes | highly |
| T787 | 89-91 | VBZ | denotes | is |
| T786 | 87-88 | -RRB- | denotes | ) |
| T785 | 82-87 | NN | denotes | PAI-2 |
| T784 | 81-82 | -LRB- | denotes | ( |
| T783 | 79-80 | CD | denotes | 2 |
| T782 | 74-78 | NN | denotes | type |
| T781 | 64-73 | NN | denotes | inhibitor |
| T780 | 54-63 | NN | denotes | activator |
| T779 | 42-53 | NN | denotes | plasminogen |
| T778 | 39-41 | CC | denotes | or |
| T777 | 30-38 | NNP | denotes | SerpinB2 |
| R365 | T778 | T777 | cc | or,SerpinB2 |
| R367 | T780 | T781 | amod | activator,inhibitor |
| R368 | T781 | T782 | compound | inhibitor,type |
| R370 | T783 | T782 | nummod | 2,type |
| R371 | T784 | T782 | punct | (,type |
| R372 | T785 | T782 | appos | PAI-2,type |
| R373 | T786 | T782 | punct | ),type |
| R374 | T787 | T789 | auxpass | is,induced |
| R375 | T788 | T789 | advmod | highly,induced |
| R376 | T789 | T789 | ROOT | induced,induced |
| R377 | T790 | T789 | prep | in,induced |
| R378 | T791 | T790 | pobj | macrophages,in |
| R379 | T792 | T789 | prep | in,induced |
| R380 | T793 | T792 | pobj | response,in |
| R381 | T794 | T793 | prep | to,response |
| R382 | T795 | T796 | amod | inflammatory,stimuli |
| R383 | T796 | T794 | pobj | stimuli,to |
| R384 | T797 | T789 | cc | and,induced |
| R385 | T798 | T799 | auxpass | is,linked |
| R386 | T799 | T789 | conj | linked,induced |
| R387 | T800 | T799 | prep | to,linked |
| R388 | T801 | T802 | det | the,modulation |
| R389 | T802 | T800 | pobj | modulation,to |
| R390 | T803 | T802 | prep | of,modulation |
| R391 | T804 | T805 | amod | innate,immunity |
| R392 | T805 | T803 | pobj | immunity,of |
| R393 | T806 | T802 | punct | ",",modulation |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T267 | 190-192 | IN | denotes | of |
| T266 | 179-189 | NN | denotes | modulation |
| T265 | 175-178 | DT | denotes | the |
| T264 | 172-174 | TO | denotes | to |
| T263 | 165-171 | VB | denotes | linked |
| T262 | 162-164 | VB | denotes | is |
| T261 | 158-161 | CC | denotes | and |
| T260 | 150-157 | NN | denotes | stimuli |
| T259 | 137-149 | JJ | denotes | inflammatory |
| T258 | 134-136 | TO | denotes | to |
| T257 | 125-133 | NN | denotes | response |
| T256 | 122-124 | IN | denotes | in |
| T255 | 110-121 | NN | denotes | macrophages |
| T254 | 107-109 | IN | denotes | in |
| T253 | 99-106 | VB | denotes | induced |
| T252 | 92-98 | RB | denotes | highly |
| T251 | 89-91 | VB | denotes | is |
| T250 | 87-88 | -RRB- | denotes | ) |
| T249 | 82-87 | NN | denotes | PAI-2 |
| T248 | 81-82 | -LRB- | denotes | ( |
| T247 | 79-80 | CD | denotes | 2 |
| T246 | 74-78 | NN | denotes | type |
| T245 | 64-73 | NN | denotes | inhibitor |
| T244 | 54-63 | NN | denotes | activator |
| T243 | 42-53 | NN | denotes | plasminogen |
| T242 | 39-41 | CC | denotes | or |
| T241 | 30-38 | NN | denotes | SerpinB2 |
| T271 | 210-220 | NN | denotes | macrophage |
| T270 | 208-209 | -COMMA- | denotes | , |
| T269 | 200-208 | NN | denotes | immunity |
| T268 | 193-199 | JJ | denotes | innate |
| R49 | T241 | T242 | arg1Of | SerpinB2,or |
| R50 | T243 | T242 | arg2Of | plasminogen,or |
| R51 | T246 | T241 | arg1Of | type,SerpinB2 |
| R52 | T246 | T243 | arg1Of | type,plasminogen |
| R53 | T246 | T244 | arg1Of | type,activator |
| R54 | T246 | T245 | arg1Of | type,inhibitor |
| R55 | T246 | T247 | arg1Of | type,2 |
| R56 | T246 | T248 | arg1Of | type,( |
| R57 | T246 | T251 | arg1Of | type,is |
| R58 | T246 | T253 | arg2Of | type,induced |
| R59 | T246 | T262 | arg1Of | type,is |
| R60 | T246 | T263 | arg2Of | type,linked |
| R61 | T249 | T248 | arg2Of | PAI-2,( |
| R62 | T250 | T248 | arg3Of | ),( |
| R63 | T253 | T251 | arg2Of | induced,is |
| R64 | T253 | T252 | arg1Of | induced,highly |
| R65 | T253 | T254 | arg1Of | induced,in |
| R66 | T253 | T256 | arg1Of | induced,in |
| R67 | T253 | T261 | arg1Of | induced,and |
| R68 | T255 | T254 | arg2Of | macrophages,in |
| R69 | T257 | T256 | arg2Of | response,in |
| R70 | T257 | T258 | arg1Of | response,to |
| R71 | T260 | T258 | arg2Of | stimuli,to |
| R72 | T260 | T259 | arg1Of | stimuli,inflammatory |
| R73 | T263 | T261 | arg2Of | linked,and |
| R74 | T263 | T262 | arg2Of | linked,is |
| R75 | T263 | T264 | arg1Of | linked,to |
| R76 | T266 | T264 | arg2Of | modulation,to |
| R77 | T266 | T265 | arg1Of | modulation,the |
| R78 | T266 | T267 | arg1Of | modulation,of |
| R79 | T269 | T268 | arg1Of | immunity,innate |
| R80 | T269 | T270 | arg1Of | immunity,"," |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T159 | 30-38 | Protein | denotes | SerpinB2 |
| T160 | 42-80 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T161 | 82-87 | Protein | denotes | PAI-2 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T530 | 30-38 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T537 | 79-85 | http://www.uniprot.org/uniprot/P05120 | denotes | 2 (PAI |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T182 | 193-208 | http://purl.obolibrary.org/obo/GO_0045087 | denotes | innate immunity |
| T180 | 125-149 | http://purl.obolibrary.org/obo/GO_0006954 | denotes | response to inflammatory |
| T178 | 42-63 | http://purl.obolibrary.org/obo/GO_0031639 | denotes | plasminogen activator |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 21-29 | Sentence | denotes | Abstract |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T212 | 30-38 | Protein | denotes | SerpinB2 |
| T213 | 42-80 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T214 | 82-87 | Protein | denotes | PAI-2 |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T512 | 99-106 | Positive_regulation | denotes | induced |
| T493 | 30-38 | Protein | denotes | SerpinB2 |
| T494 | 42-80 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T495 | 82-87 | Protein | denotes | PAI-2 |
| R677 | T493 | T512 | themeOf | SerpinB2,induced |
| R678 | T494 | T512 | themeOf | plasminogen activator inhibitor type 2,induced |
| R679 | T495 | T512 | themeOf | PAI-2,induced |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T603 | 30-38 | Protein | denotes | SerpinB2 |
| T604 | 42-80 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T605 | 82-87 | Protein | denotes | PAI-2 |
| T622 | 99-106 | Positive_regulation | denotes | induced |
| R717 | T604 | T622 | themeOf | plasminogen activator inhibitor type 2,induced |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T569 | 30-38 | Protein | denotes | SerpinB2 |
| T570 | 42-80 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T571 | 82-87 | Protein | denotes | PAI-2 |
| T589 | 99-106 | Positive_regulation | denotes | induced |
| R684 | T570 | T589 | themeOf | plasminogen activator inhibitor type 2,induced |
| R683 | T569 | T589 | themeOf | SerpinB2,induced |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T705 | 210-220 | Entity | denotes | macrophage |
| T723 | 110-121 | Entity | denotes | macrophages |
| T739 | 82-87 | Protein | denotes | PAI-2 |
| T740 | 30-88 | Protein | denotes | SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) |
| T744 | 42-88 | Protein | denotes | plasminogen activator inhibitor type 2 (PAI-2) |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T643 | 99-106 | Positive_regulation | denotes | induced |
| T642 | 99-106 | Positive_regulation | denotes | induced |
| T640 | 82-87 | Protein | denotes | PAI-2 |
| T639 | 42-80 | Protein | denotes | plasminogen activator inhibitor type 2 |
| R322 | T640 | T643 | themeOf | PAI-2,induced |
| R706 | T639 | T642 | themeOf | plasminogen activator inhibitor type 2,induced |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24 | 82-87 | Protein | denotes | PAI-2 |
| T23 | 42-80 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T22 | 30-38 | Protein | denotes | SerpinB2 |
| R1 | T24 | T23 | equivalentTo | PAI-2,plasminogen activator inhibitor type 2 |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T73 | 99-106 | Positive_regulation | denotes | induced |
| T72 | 82-87 | Protein | denotes | PAI-2 |
| T71 | 42-80 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T70 | 30-38 | Protein | denotes | SerpinB2 |
| T53 | 82-87 | Protein | denotes | PAI-2 |
| T52 | 42-80 | Protein | denotes | plasminogen activator inhibitor type 2 |
| T51 | 30-38 | Protein | denotes | SerpinB2 |
| R15 | T71 | T73 | themeOf | plasminogen activator inhibitor type 2,induced |
| R16 | T72 | T71 | equivalentTo | PAI-2,plasminogen activator inhibitor type 2 |