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PMC:3589482 / 124-507 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T832 370-379 JJ denotes toll-like
T831 366-369 DT denotes the
T830 362-365 IN denotes via
T829 351-361 NN denotes expression
T828 342-350 NNP denotes SerpinB2
T827 335-341 VB denotes induce
T826 331-334 MD denotes can
T825 329-330 , denotes ,
T824 320-329 NN denotes endotoxin
T823 310-319 JJ denotes bacterial
T822 303-309 JJ denotes potent
T821 301-302 DT denotes a
T820 299-300 , denotes ,
T819 298-299 -RRB- denotes )
T818 295-298 NNP denotes LPS
T817 294-295 -LRB- denotes (
T816 275-293 NNP denotes Lipopolysaccharide
T815 273-274 . denotes .
T814 263-273 NNS denotes activators
T813 251-262 NN denotes plasminogen
T812 248-250 IN denotes of
T811 237-247 NN denotes inhibition
T810 233-236 CC denotes and
T809 231-232 , denotes ,
T808 223-231 NN denotes survival
T807 212-222 NN denotes macrophage
T806 210-211 , denotes ,
T805 202-210 NN denotes immunity
T804 195-201 NN denotes innate
T803 192-194 IN denotes of
T802 181-191 NN denotes modulation
T801 177-180 DT denotes the
T800 174-176 TO denotes to
T799 167-173 VBN denotes linked
T798 164-166 VBZ denotes is
T797 160-163 CC denotes and
T796 152-159 NNS denotes stimuli
T795 139-151 JJ denotes inflammatory
T794 136-138 TO denotes to
T793 127-135 NN denotes response
T792 124-126 IN denotes in
T791 112-123 NNS denotes macrophages
T790 109-111 IN denotes in
T789 101-108 VBN denotes induced
T788 94-100 RB denotes highly
T787 91-93 VBZ denotes is
T786 89-90 -RRB- denotes )
T785 84-89 NN denotes PAI-2
T784 83-84 -LRB- denotes (
T783 81-82 CD denotes 2
T782 76-80 NN denotes type
T781 66-75 NN denotes inhibitor
T780 56-65 NN denotes activator
T779 44-55 NN denotes plasminogen
T778 41-43 CC denotes or
T777 32-40 NNP denotes SerpinB2
R365 T778 T777 cc or,SerpinB2
R367 T780 T781 amod activator,inhibitor
R368 T781 T782 compound inhibitor,type
R370 T783 T782 nummod 2,type
R371 T784 T782 punct (,type
R372 T785 T782 appos PAI-2,type
R373 T786 T782 punct ),type
R374 T787 T789 auxpass is,induced
R375 T788 T789 advmod highly,induced
R376 T789 T789 ROOT induced,induced
R377 T790 T789 prep in,induced
R378 T791 T790 pobj macrophages,in
R379 T792 T789 prep in,induced
R380 T793 T792 pobj response,in
R381 T794 T793 prep to,response
R382 T795 T796 amod inflammatory,stimuli
R383 T796 T794 pobj stimuli,to
R384 T797 T789 cc and,induced
R385 T798 T799 auxpass is,linked
R386 T799 T789 conj linked,induced
R387 T800 T799 prep to,linked
R388 T801 T802 det the,modulation
R389 T802 T800 pobj modulation,to
R390 T803 T802 prep of,modulation
R391 T804 T805 amod innate,immunity
R392 T805 T803 pobj immunity,of
R393 T806 T802 punct ",",modulation
R394 T807 T808 compound macrophage,survival
R395 T808 T802 conj survival,modulation
R396 T809 T808 punct ",",survival
R397 T810 T808 cc and,survival
R398 T811 T808 conj inhibition,survival
R399 T812 T811 prep of,inhibition
R400 T813 T814 compound plasminogen,activators
R401 T814 T812 pobj activators,of
R402 T815 T789 punct .,induced
R403 T816 T827 npadvmod Lipopolysaccharide,induce
R404 T817 T818 punct (,LPS
R405 T818 T816 appos LPS,Lipopolysaccharide
R406 T819 T816 punct ),Lipopolysaccharide
R407 T820 T816 punct ",",Lipopolysaccharide
R408 T821 T824 det a,endotoxin
R409 T822 T824 amod potent,endotoxin
R410 T823 T824 amod bacterial,endotoxin
R411 T824 T816 appos endotoxin,Lipopolysaccharide
R412 T825 T827 punct ",",induce
R413 T826 T827 aux can,induce
R414 T827 T827 ROOT induce,induce
R415 T828 T829 compound SerpinB2,expression
R416 T829 T827 dobj expression,induce
R417 T830 T827 prep via,induce

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T267 192-194 IN denotes of
T266 181-191 NN denotes modulation
T265 177-180 DT denotes the
T264 174-176 TO denotes to
T263 167-173 VB denotes linked
T262 164-166 VB denotes is
T261 160-163 CC denotes and
T260 152-159 NN denotes stimuli
T259 139-151 JJ denotes inflammatory
T258 136-138 TO denotes to
T257 127-135 NN denotes response
T256 124-126 IN denotes in
T255 112-123 NN denotes macrophages
T254 109-111 IN denotes in
T253 101-108 VB denotes induced
T252 94-100 RB denotes highly
T251 91-93 VB denotes is
T250 89-90 -RRB- denotes )
T249 84-89 NN denotes PAI-2
T248 83-84 -LRB- denotes (
T247 81-82 CD denotes 2
T246 76-80 NN denotes type
T245 66-75 NN denotes inhibitor
T244 56-65 NN denotes activator
T243 44-55 NN denotes plasminogen
T242 41-43 CC denotes or
T241 32-40 NN denotes SerpinB2
T295 370-379 JJ denotes toll-like
T294 366-369 DT denotes the
T293 362-365 IN denotes via
T292 351-361 NN denotes expression
T291 342-350 NN denotes SerpinB2
T290 335-341 VB denotes induce
T289 331-334 MD denotes can
T288 329-330 -COMMA- denotes ,
T287 320-329 NN denotes endotoxin
T286 310-319 JJ denotes bacterial
T285 303-309 JJ denotes potent
T284 301-302 DT denotes a
T283 299-300 -COMMA- denotes ,
T282 298-299 -RRB- denotes )
T281 295-298 NN denotes LPS
T280 294-295 -LRB- denotes (
T279 275-293 NN denotes Lipopolysaccharide
T278 263-273 NN denotes activators
T277 251-262 NN denotes plasminogen
T276 248-250 IN denotes of
T275 237-247 NN denotes inhibition
T274 233-236 CC denotes and
T273 231-232 -COMMA- denotes ,
T272 223-231 NN denotes survival
T271 212-222 NN denotes macrophage
T270 210-211 -COMMA- denotes ,
T269 202-210 NN denotes immunity
T268 195-201 JJ denotes innate
R49 T241 T242 arg1Of SerpinB2,or
R50 T243 T242 arg2Of plasminogen,or
R51 T246 T241 arg1Of type,SerpinB2
R52 T246 T243 arg1Of type,plasminogen
R53 T246 T244 arg1Of type,activator
R54 T246 T245 arg1Of type,inhibitor
R55 T246 T247 arg1Of type,2
R56 T246 T248 arg1Of type,(
R57 T246 T251 arg1Of type,is
R58 T246 T253 arg2Of type,induced
R59 T246 T262 arg1Of type,is
R60 T246 T263 arg2Of type,linked
R61 T249 T248 arg2Of PAI-2,(
R62 T250 T248 arg3Of ),(
R63 T253 T251 arg2Of induced,is
R64 T253 T252 arg1Of induced,highly
R65 T253 T254 arg1Of induced,in
R66 T253 T256 arg1Of induced,in
R67 T253 T261 arg1Of induced,and
R68 T255 T254 arg2Of macrophages,in
R69 T257 T256 arg2Of response,in
R70 T257 T258 arg1Of response,to
R71 T260 T258 arg2Of stimuli,to
R72 T260 T259 arg1Of stimuli,inflammatory
R73 T263 T261 arg2Of linked,and
R74 T263 T262 arg2Of linked,is
R75 T263 T264 arg1Of linked,to
R76 T266 T264 arg2Of modulation,to
R77 T266 T265 arg1Of modulation,the
R78 T266 T267 arg1Of modulation,of
R79 T269 T268 arg1Of immunity,innate
R80 T269 T270 arg1Of immunity,","
R81 T270 T274 arg1Of ",",and
R82 T272 T270 arg2Of survival,","
R83 T272 T271 arg1Of survival,macrophage
R84 T274 T267 arg2Of and,of
R85 T274 T273 arg1Of and,","
R86 T275 T274 arg2Of inhibition,and
R87 T275 T276 arg1Of inhibition,of
R88 T278 T276 arg2Of activators,of
R89 T278 T277 arg1Of activators,plasminogen
R90 T279 T280 arg1Of Lipopolysaccharide,(
R91 T279 T283 arg1Of Lipopolysaccharide,","
R92 T279 T289 arg1Of Lipopolysaccharide,can
R93 T279 T290 arg1Of Lipopolysaccharide,induce
R94 T281 T280 arg2Of LPS,(
R95 T282 T280 arg3Of ),(
R96 T287 T283 arg2Of endotoxin,","
R97 T287 T284 arg1Of endotoxin,a
R98 T287 T285 arg1Of endotoxin,potent
R99 T287 T286 arg1Of endotoxin,bacterial
R100 T290 T288 arg1Of induce,","
R101 T290 T289 arg2Of induce,can
R102 T290 T293 arg1Of induce,via
R105 T292 T290 arg2Of expression,induce
R106 T292 T291 arg1Of expression,SerpinB2

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T159 32-40 Protein denotes SerpinB2
T160 44-82 Protein denotes plasminogen activator inhibitor type 2
T161 84-89 Protein denotes PAI-2
T162 342-350 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T530 32-40 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T531 342-350 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T537 81-87 http://www.uniprot.org/uniprot/P05120 denotes 2 (PAI

GO-BP

Id Subject Object Predicate Lexical cue
T183 237-273 http://purl.obolibrary.org/obo/GO_0010757 denotes inhibition of plasminogen activators
T182 195-210 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immunity
T180 127-151 http://purl.obolibrary.org/obo/GO_0006954 denotes response to inflammatory
T179 251-273 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activators
T178 44-65 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activator

sentences

Id Subject Object Predicate Lexical cue
T100 32-274 Sentence denotes SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators.
T3 23-31 Sentence denotes Abstract
T4 32-274 Sentence denotes SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators.

simple1

Id Subject Object Predicate Lexical cue
T212 32-40 Protein denotes SerpinB2
T213 44-82 Protein denotes plasminogen activator inhibitor type 2
T214 84-89 Protein denotes PAI-2
T215 342-350 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T514 335-341 Positive_regulation denotes induce
T513 351-361 Gene_expression denotes expression
T512 101-108 Positive_regulation denotes induced
T493 32-40 Protein denotes SerpinB2
T494 44-82 Protein denotes plasminogen activator inhibitor type 2
T495 84-89 Protein denotes PAI-2
T496 342-350 Protein denotes SerpinB2
R308 T513 T514 themeOf expression,induce
R677 T493 T512 themeOf SerpinB2,induced
R678 T494 T512 themeOf plasminogen activator inhibitor type 2,induced
R679 T495 T512 themeOf PAI-2,induced
R680 T496 T513 themeOf SerpinB2,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T603 32-40 Protein denotes SerpinB2
T604 44-82 Protein denotes plasminogen activator inhibitor type 2
T605 84-89 Protein denotes PAI-2
T606 342-350 Protein denotes SerpinB2
T622 101-108 Positive_regulation denotes induced
T623 351-361 Gene_expression denotes expression
T624 335-341 Positive_regulation denotes induce
R717 T604 T622 themeOf plasminogen activator inhibitor type 2,induced
R718 T606 T623 themeOf SerpinB2,expression
R733 T623 T624 themeOf expression,induce

DLUT931

Id Subject Object Predicate Lexical cue
T569 32-40 Protein denotes SerpinB2
T570 44-82 Protein denotes plasminogen activator inhibitor type 2
T571 84-89 Protein denotes PAI-2
T572 342-350 Protein denotes SerpinB2
T589 101-108 Positive_regulation denotes induced
T590 351-361 Gene_expression denotes expression
T591 335-341 Positive_regulation denotes induce
R684 T570 T589 themeOf plasminogen activator inhibitor type 2,induced
R683 T569 T589 themeOf SerpinB2,induced
R685 T572 T590 themeOf SerpinB2,expression
R693 T590 T591 themeOf expression,induce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T759 342-361 Gene_expression denotes SerpinB2 expression
T750 295-298 Entity denotes LPS
T748 342-350 Protein denotes SerpinB2
T705 212-222 Entity denotes macrophage
T709 275-300 Entity denotes Lipopolysaccharide (LPS),
T711 320-329 Entity denotes endotoxin
T723 112-123 Entity denotes macrophages
T733 248-273 Entity denotes of plasminogen activators
T739 84-89 Protein denotes PAI-2
T740 32-90 Protein denotes SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2)
T744 44-90 Protein denotes plasminogen activator inhibitor type 2 (PAI-2)
T745 251-262 Protein denotes plasminogen
R348 T748 T759 themeOf SerpinB2,SerpinB2 expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T647 335-341 Positive_regulation denotes induce
T646 351-361 Gene_expression denotes expression
T645 342-350 Protein denotes SerpinB2
T644 237-247 Negative_regulation denotes inhibition
T643 101-108 Positive_regulation denotes induced
T642 101-108 Positive_regulation denotes induced
T641 251-273 Protein denotes plasminogen activators
T640 84-89 Protein denotes PAI-2
T639 44-82 Protein denotes plasminogen activator inhibitor type 2
R322 T640 T643 themeOf PAI-2,induced
R323 T641 T644 themeOf plasminogen activators,inhibition
R324 T645 T646 themeOf SerpinB2,expression
R325 T646 T647 themeOf expression,induce
R706 T639 T642 themeOf plasminogen activator inhibitor type 2,induced

testone

Id Subject Object Predicate Lexical cue
T40 351-361 Gene_expression denotes expression
T39 335-341 Positive_regulation denotes induce
T25 342-350 Protein denotes SerpinB2
T24 84-89 Protein denotes PAI-2
T23 44-82 Protein denotes plasminogen activator inhibitor type 2
T22 32-40 Protein denotes SerpinB2
R8 T40 T39 themeOf expression,induce
R1 T24 T23 equivalentTo PAI-2,plasminogen activator inhibitor type 2
R2 T25 T40 themeOf SerpinB2,expression

test3

Id Subject Object Predicate Lexical cue
T76 351-361 Gene_expression denotes expression
T75 342-350 Protein denotes SerpinB2
T74 335-341 Positive_regulation denotes induce
T73 101-108 Positive_regulation denotes induced
T72 84-89 Protein denotes PAI-2
T71 44-82 Protein denotes plasminogen activator inhibitor type 2
T70 32-40 Protein denotes SerpinB2
T54 342-350 Protein denotes SerpinB2
T53 84-89 Protein denotes PAI-2
T52 44-82 Protein denotes plasminogen activator inhibitor type 2
T51 32-40 Protein denotes SerpinB2
R15 T71 T73 themeOf plasminogen activator inhibitor type 2,induced
R16 T72 T71 equivalentTo PAI-2,plasminogen activator inhibitor type 2
R17 T75 T76 themeOf SerpinB2,expression
R18 T76 T74 themeOf expression,induce