PMC:3589482 / 12275-12513
Annnotations
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6586 | 237-238 | . | denotes | . |
| T6585 | 236-237 | -RRB- | denotes | ) |
| T6584 | 228-236 | NN | denotes | activity |
| T6583 | 221-227 | JJ | denotes | pRL-TK |
| T6582 | 212-220 | VBD | denotes | affected |
| T6581 | 208-211 | NNP | denotes | LPS |
| T6580 | 205-207 | CC | denotes | or |
| T6579 | 203-204 | NN | denotes | β |
| T6578 | 202-203 | : | denotes | - |
| T6577 | 197-202 | NNP | denotes | C/EBP |
| T6576 | 182-196 | JJ | denotes | co-transfected |
| T6575 | 176-181 | WRB | denotes | where |
| T6574 | 175-176 | -LRB- | denotes | ( |
| T6573 | 161-174 | NN | denotes | concentration |
| T6572 | 153-160 | NN | denotes | protein |
| T6571 | 144-152 | JJ | denotes | cellular |
| T6570 | 141-143 | TO | denotes | to |
| T6569 | 138-140 | CC | denotes | or |
| T6568 | 132-137 | NNS | denotes | units |
| T6567 | 126-131 | JJ | denotes | light |
| T6566 | 115-125 | NN | denotes | luciferase |
| T6565 | 107-114 | NN | denotes | renilla |
| T6564 | 100-106 | JJ | denotes | pRL-TK |
| T6563 | 97-99 | TO | denotes | to |
| T6562 | 90-96 | RB | denotes | either |
| T6561 | 79-89 | VBD | denotes | normalized |
| T6560 | 73-78 | NNS | denotes | units |
| T6559 | 67-72 | JJ | denotes | light |
| T6558 | 56-66 | JJ | denotes | luciferase |
| T6557 | 48-55 | RB | denotes | firefly |
| T6556 | 45-47 | IN | denotes | of |
| T6555 | 38-44 | NN | denotes | number |
| T6554 | 34-37 | DT | denotes | the |
| T6553 | 31-33 | IN | denotes | as |
| T6552 | 21-30 | VBN | denotes | expressed |
| T6551 | 18-20 | VBZ | denotes | is |
| T6550 | 9-17 | NN | denotes | activity |
| T6549 | 0-8 | NN | denotes | Promoter |
| R4687 | T6549 | T6550 | compound | Promoter,activity |
| R4688 | T6550 | T6552 | nsubjpass | activity,expressed |
| R4689 | T6551 | T6552 | auxpass | is,expressed |
| R4690 | T6552 | T6552 | ROOT | expressed,expressed |
| R4691 | T6553 | T6552 | prep | as,expressed |
| R4692 | T6554 | T6555 | det | the,number |
| R4693 | T6555 | T6553 | pobj | number,as |
| R4694 | T6556 | T6555 | prep | of,number |
| R4695 | T6557 | T6558 | advmod | firefly,luciferase |
| R4696 | T6558 | T6560 | amod | luciferase,units |
| R4697 | T6559 | T6560 | amod | light,units |
| R4698 | T6560 | T6556 | pobj | units,of |
| R4699 | T6561 | T6552 | conj | normalized,expressed |
| R4700 | T6562 | T6561 | advmod | either,normalized |
| R4701 | T6563 | T6564 | aux | to,pRL-TK |
| R4702 | T6564 | T6562 | xcomp | pRL-TK,either |
| R4703 | T6565 | T6566 | compound | renilla,luciferase |
| R4704 | T6566 | T6568 | amod | luciferase,units |
| R4705 | T6567 | T6568 | amod | light,units |
| R4706 | T6568 | T6564 | dobj | units,pRL-TK |
| R4707 | T6569 | T6564 | cc | or,pRL-TK |
| R4708 | T6570 | T6564 | conj | to,pRL-TK |
| R4709 | T6571 | T6573 | amod | cellular,concentration |
| R4710 | T6572 | T6573 | compound | protein,concentration |
| R4711 | T6573 | T6570 | pobj | concentration,to |
| R4712 | T6574 | T6573 | punct | (,concentration |
| R4713 | T6575 | T6582 | advmod | where,affected |
| R4714 | T6576 | T6582 | nsubj | co-transfected,affected |
| R4715 | T6577 | T6579 | compound | C/EBP,β |
| R4716 | T6578 | T6579 | punct | -,β |
| R4717 | T6579 | T6582 | nsubj | β,affected |
| R4718 | T6580 | T6579 | cc | or,β |
| R4719 | T6581 | T6579 | conj | LPS,β |
| R4720 | T6582 | T6573 | relcl | affected,concentration |
| R4721 | T6583 | T6584 | amod | pRL-TK,activity |
| R4722 | T6584 | T6582 | dobj | activity,affected |
| R4723 | T6585 | T6573 | punct | ),concentration |
| R4724 | T6586 | T6552 | punct | .,expressed |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6236 | 236-237 | -RRB- | denotes | ) |
| T6225 | 153-160 | NN | denotes | protein |
| T6224 | 144-152 | JJ | denotes | cellular |
| T6223 | 141-143 | TO | denotes | to |
| T6222 | 138-140 | CC | denotes | or |
| T6221 | 132-137 | NN | denotes | units |
| T6220 | 126-131 | JJ | denotes | light |
| T6219 | 115-125 | NN | denotes | luciferase |
| T6218 | 107-114 | NN | denotes | renilla |
| T6217 | 100-106 | NN | denotes | pRL-TK |
| T6216 | 97-99 | TO | denotes | to |
| T6215 | 90-96 | CC | denotes | either |
| T6214 | 79-89 | VB | denotes | normalized |
| T6213 | 73-78 | NN | denotes | units |
| T6212 | 67-72 | JJ | denotes | light |
| T6211 | 56-66 | NN | denotes | luciferase |
| T6210 | 48-55 | JJ | denotes | firefly |
| T6209 | 45-47 | IN | denotes | of |
| T6208 | 38-44 | NN | denotes | number |
| T6207 | 34-37 | DT | denotes | the |
| T6206 | 31-33 | IN | denotes | as |
| T6205 | 21-30 | VB | denotes | expressed |
| T6204 | 18-20 | VB | denotes | is |
| T6203 | 9-17 | NN | denotes | activity |
| T6202 | 0-8 | NN | denotes | Promoter |
| T6235 | 228-236 | NN | denotes | activity |
| T6234 | 221-227 | NN | denotes | pRL-TK |
| T6233 | 212-220 | VB | denotes | affected |
| T6232 | 208-211 | NN | denotes | LPS |
| T6231 | 205-207 | CC | denotes | or |
| T6230 | 197-204 | NN | denotes | C/EBP-β |
| T6229 | 182-196 | VB | denotes | co-transfected |
| T6228 | 176-181 | WRB | denotes | where |
| T6227 | 175-176 | -LRB- | denotes | ( |
| T6226 | 161-174 | NN | denotes | concentration |
| R4441 | T6203 | T6202 | arg1Of | activity,Promoter |
| R4442 | T6203 | T6204 | arg1Of | activity,is |
| R4443 | T6203 | T6205 | arg2Of | activity,expressed |
| R4444 | T6205 | T6204 | arg2Of | expressed,is |
| R4445 | T6205 | T6206 | arg1Of | expressed,as |
| R4446 | T6205 | T6223 | arg1Of | expressed,to |
| R4447 | T6206 | T6222 | arg1Of | as,or |
| R4448 | T6208 | T6206 | arg2Of | number,as |
| R4449 | T6208 | T6207 | arg1Of | number,the |
| R4450 | T6208 | T6209 | arg1Of | number,of |
| R4451 | T6213 | T6209 | arg2Of | units,of |
| R4452 | T6213 | T6210 | arg1Of | units,firefly |
| R4453 | T6213 | T6211 | arg1Of | units,luciferase |
| R4454 | T6213 | T6212 | arg1Of | units,light |
| R4455 | T6213 | T6214 | arg2Of | units,normalized |
| R4456 | T6214 | T6216 | arg1Of | normalized,to |
| R4457 | T6216 | T6215 | arg1Of | to,either |
| R4458 | T6221 | T6216 | arg2Of | units,to |
| R4459 | T6221 | T6217 | arg1Of | units,pRL-TK |
| R4460 | T6221 | T6218 | arg1Of | units,renilla |
| R4461 | T6221 | T6219 | arg1Of | units,luciferase |
| R4462 | T6221 | T6220 | arg1Of | units,light |
| R4463 | T6223 | T6222 | arg2Of | to,or |
| R4464 | T6226 | T6223 | arg2Of | concentration,to |
| R4465 | T6226 | T6224 | arg1Of | concentration,cellular |
| R4466 | T6226 | T6225 | arg1Of | concentration,protein |
| R4467 | T6226 | T6227 | arg1Of | concentration,( |
| R4468 | T6228 | T6227 | arg2Of | where,( |
| R4469 | T6230 | T6231 | arg1Of | C/EBP-β,or |
| R4470 | T6231 | T6229 | arg2Of | or,co-transfected |
| R4471 | T6231 | T6233 | arg1Of | or,affected |
| R4472 | T6232 | T6231 | arg2Of | LPS,or |
| R4473 | T6233 | T6228 | arg1Of | affected,where |
| R4474 | T6235 | T6233 | arg2Of | activity,affected |
| R4475 | T6235 | T6234 | arg1Of | activity,pRL-TK |
| R4476 | T6236 | T6227 | arg3Of | ),( |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5994 | 225-227 | Protein | denotes | TK |
| T5993 | 197-204 | Protein | denotes | C/EBP-β |
| T5992 | 115-125 | Protein | denotes | luciferase |
| T5991 | 104-106 | Protein | denotes | TK |
| T5990 | 56-66 | Protein | denotes | luciferase |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6265 | 197-204 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
| T6264 | 115-125 | http://www.uniprot.org/uniprot/P08659 | denotes | luciferase |
| T6263 | 56-66 | http://www.uniprot.org/uniprot/P08659 | denotes | luciferase |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6000 | 144-152 | http://purl.obolibrary.org/obo/GO_0007349 | denotes | cellular |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5970 | 0-238 | Sentence | denotes | Promoter activity is expressed as the number of firefly luciferase light units normalized either to pRL-TK renilla luciferase light units or to cellular protein concentration (where co-transfected C/EBP-β or LPS affected pRL-TK activity). |
| T74 | 0-238 | Sentence | denotes | Promoter activity is expressed as the number of firefly luciferase light units normalized either to pRL-TK renilla luciferase light units or to cellular protein concentration (where co-transfected C/EBP-β or LPS affected pRL-TK activity). |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6030 | 225-227 | Protein | denotes | TK |
| T6029 | 197-204 | Protein | denotes | C/EBP-β |
| T6028 | 115-125 | Protein | denotes | luciferase |
| T6027 | 104-106 | Protein | denotes | TK |
| T6026 | 56-66 | Protein | denotes | luciferase |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6259 | 212-220 | Regulation | denotes | affected |
| T6258 | 182-196 | Gene_expression | denotes | co-transfected |
| T6257 | 115-125 | Protein | denotes | luciferase |
| T6256 | 104-106 | Protein | denotes | TK |
| T6255 | 56-66 | Protein | denotes | luciferase |
| T6254 | 225-227 | Protein | denotes | TK |
| T6253 | 197-204 | Protein | denotes | C/EBP-β |
| R4487 | T6253 | T6258 | themeOf | C/EBP-β,co-transfected |
| R4488 | T6253 | T6259 | causeOf | C/EBP-β,affected |
| R4489 | T6254 | T6259 | themeOf | TK,affected |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6300 | 182-196 | Gene_expression | denotes | co-transfected |
| T6299 | 115-125 | Protein | denotes | luciferase |
| T6298 | 104-106 | Protein | denotes | TK |
| T6297 | 56-66 | Protein | denotes | luciferase |
| T6296 | 225-227 | Protein | denotes | TK |
| T6295 | 197-204 | Protein | denotes | C/EBP-β |
| R4493 | T6295 | T6300 | themeOf | C/EBP-β,co-transfected |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6277 | 182-196 | Gene_expression | denotes | co-transfected |
| T6276 | 115-125 | Protein | denotes | luciferase |
| T6275 | 104-106 | Protein | denotes | TK |
| T6274 | 56-66 | Protein | denotes | luciferase |
| T6273 | 225-227 | Protein | denotes | TK |
| T6272 | 197-204 | Protein | denotes | C/EBP-β |
| R4490 | T6272 | T6277 | themeOf | C/EBP-β,co-transfected |
| R4491 | T6274 | T6277 | themeOf | luciferase,co-transfected |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6341 | 104-106 | Protein | denotes | TK |
| T6337 | 144-160 | Protein | denotes | cellular protein |
| T6336 | 48-66 | Protein | denotes | firefly luciferase |
| T6355 | 208-211 | Entity | denotes | LPS |
| T6354 | 115-125 | Protein | denotes | luciferase |
| T6353 | 100-106 | Protein | denotes | pRL-TK |
| T6351 | 221-227 | Protein | denotes | pRL-TK |
| T6367 | 176-236 | Regulation | denotes | where co-transfected C/EBP-β or LPS affected pRL-TK activity |
| T6366 | 176-236 | Regulation | denotes | where co-transfected C/EBP-β or LPS affected pRL-TK activity |
| T6365 | 100-106 | Protein | denotes | pRL-TK |
| T6362 | 182-204 | Protein | denotes | co-transfected C/EBP-β |
| T6359 | 221-227 | Protein | denotes | pRL-TK |
| T6358 | 0-8 | Entity | denotes | Promoter |
| R4504 | T6355 | T6367 | causeOf | LPS,where co-transfected C/EBP-β or LPS affected pRL-TK activity |
| R4505 | T6362 | T6366 | causeOf | co-transfected C/EBP-β,where co-transfected C/EBP-β or LPS affected pRL-TK activity |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6316 | 212-220 | Regulation | denotes | affected |
| T6315 | 212-220 | Regulation | denotes | affected |
| T6314 | 21-30 | Gene_expression | denotes | expressed |
| T6313 | 225-227 | Protein | denotes | TK |
| T6312 | 221-224 | Protein | denotes | pRL |
| T6311 | 197-204 | Protein | denotes | C/EBP-β |
| T6310 | 104-137 | Protein | denotes | TK renilla luciferase light units |
| T6309 | 100-103 | Protein | denotes | pRL |
| T6308 | 56-66 | Protein | denotes | luciferase |
| R4494 | T6308 | T6314 | themeOf | luciferase,expressed |
| R4495 | T6311 | T6315 | causeOf | C/EBP-β,affected |
| R4496 | T6311 | T6316 | causeOf | C/EBP-β,affected |
| R4497 | T6312 | T6315 | themeOf | pRL,affected |
| R4498 | T6313 | T6316 | themeOf | TK,affected |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5939 | 212-220 | Regulation | denotes | affected |
| T5938 | 182-196 | Gene_expression | denotes | co-transfected |
| T5937 | 21-30 | Gene_expression | denotes | expressed |
| T5936 | 225-227 | Protein | denotes | TK |
| T5935 | 197-204 | Protein | denotes | C/EBP-β |
| T5934 | 115-125 | Protein | denotes | luciferase |
| T5933 | 104-106 | Protein | denotes | TK |
| T5932 | 56-66 | Protein | denotes | luciferase |
| R4257 | T5932 | T5938 | themeOf | luciferase,co-transfected |
| R4258 | T5932 | T5937 | themeOf | luciferase,expressed |
| R4259 | T5934 | T5938 | themeOf | luciferase,co-transfected |
| R4260 | T5934 | T5937 | themeOf | luciferase,expressed |
| R4261 | T5935 | T5938 | themeOf | C/EBP-β,co-transfected |
| R4262 | T5938 | T5939 | themeOf | co-transfected,affected |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5963 | 225-227 | Protein | denotes | TK |
| T5962 | 197-204 | Protein | denotes | C/EBP-β |
| T5961 | 185-196 | Gene_expression | denotes | transfected |
| T5960 | 115-125 | Protein | denotes | luciferase |
| T5959 | 104-106 | Protein | denotes | TK |
| T5958 | 56-66 | Protein | denotes | luciferase |
| T5957 | 21-30 | Gene_expression | denotes | expressed |
| T5950 | 225-227 | Protein | denotes | TK |
| T5949 | 197-204 | Protein | denotes | C/EBP-β |
| T5948 | 115-125 | Protein | denotes | luciferase |
| T5947 | 104-106 | Protein | denotes | TK |
| T5946 | 56-66 | Protein | denotes | luciferase |
| R4264 | T5958 | T5957 | themeOf | luciferase,expressed |
| R4265 | T5960 | T5957 | themeOf | luciferase,expressed |
| R4266 | T5962 | T5961 | themeOf | C/EBP-β,transfected |