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PMC:3589482 / 1144-1385 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T984 240-241 -RRB- denotes )
T983 236-240 NNP denotes ChIP
T982 235-236 -LRB- denotes (
T981 215-234 NN denotes immunoprecipitation
T980 205-214 NN denotes chromatin
T979 201-204 CC denotes and
T978 199-200 -RRB- denotes )
T977 195-199 NNP denotes EMSA
T976 194-195 -LRB- denotes (
T975 188-193 NN denotes shift
T974 179-187 NN denotes mobility
T973 163-178 JJ denotes Electrophoretic
T972 161-162 . denotes .
T971 145-161 NN denotes LPS-inducibility
T970 137-144 JJ denotes optimal
T969 133-136 IN denotes for
T968 123-132 JJ denotes essential
T967 119-122 VBP denotes are
T966 110-118 NN denotes promoter
T965 101-109 JJ denotes proximal
T964 92-100 NNP denotes SerpinB2
T963 85-91 NN denotes murine
T962 81-84 DT denotes the
T961 78-80 IN denotes in
T960 69-77 NNS denotes elements
T959 60-68 NN denotes response
T958 58-59 -RRB- denotes )
T957 54-58 NN denotes AP-1
T956 53-54 -LRB- denotes (
T955 51-52 CD denotes 1
T954 43-50 NN denotes protein
T953 33-42 NN denotes activator
T952 29-32 CD denotes two
T951 25-28 CC denotes and
T950 23-24 -RRB- denotes )
T949 20-23 NNP denotes CRE
T948 19-20 -LRB- denotes (
T947 11-18 NN denotes element
T946 2-10 NN denotes response
R533 T946 T947 compound response,element
R535 T948 T949 punct (,CRE
R536 T949 T947 appos CRE,element
R537 T950 T949 punct ),CRE
R538 T951 T947 cc and,element
R539 T952 T954 nummod two,protein
R540 T953 T954 compound activator,protein
R542 T955 T957 nummod 1,AP-1
R543 T956 T957 punct (,AP-1
R544 T957 T954 appos AP-1,protein
R545 T958 T957 punct ),AP-1
R546 T959 T960 compound response,elements
R547 T960 T967 nsubj elements,are
R548 T961 T960 prep in,elements
R549 T962 T966 det the,promoter
R550 T963 T966 nmod murine,promoter
R551 T964 T966 nmod SerpinB2,promoter
R552 T965 T966 amod proximal,promoter
R553 T966 T961 pobj promoter,in
R555 T968 T967 acomp essential,are
R556 T969 T968 prep for,essential
R557 T970 T971 amod optimal,LPS-inducibility
R558 T971 T969 pobj LPS-inducibility,for
R560 T973 T975 amod Electrophoretic,shift
R561 T974 T975 compound mobility,shift
R563 T976 T977 punct (,EMSA
R564 T977 T975 appos EMSA,shift
R565 T978 T977 punct ),EMSA
R566 T979 T975 cc and,shift
R567 T980 T981 compound chromatin,immunoprecipitation
R568 T981 T975 conj immunoprecipitation,shift
R569 T982 T981 punct (,immunoprecipitation
R570 T983 T981 appos ChIP,immunoprecipitation
R571 T984 T981 punct ),immunoprecipitation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T437 240-241 -RRB- denotes )
T436 236-240 NN denotes ChIP
T435 235-236 -LRB- denotes (
T434 215-234 NN denotes immunoprecipitation
T433 205-214 NN denotes chromatin
T432 201-204 CC denotes and
T431 199-200 -RRB- denotes )
T430 195-199 NN denotes EMSA
T429 194-195 -LRB- denotes (
T428 188-193 NN denotes shift
T427 179-187 NN denotes mobility
T426 163-178 JJ denotes Electrophoretic
T425 145-161 NN denotes LPS-inducibility
T424 137-144 JJ denotes optimal
T423 133-136 IN denotes for
T422 123-132 JJ denotes essential
T421 119-122 VB denotes are
T420 110-118 NN denotes promoter
T419 101-109 JJ denotes proximal
T418 92-100 NN denotes SerpinB2
T417 85-91 JJ denotes murine
T416 81-84 DT denotes the
T415 78-80 IN denotes in
T414 69-77 NN denotes elements
T413 60-68 NN denotes response
T412 58-59 -RRB- denotes )
T411 54-58 NN denotes AP-1
T410 53-54 -LRB- denotes (
T409 51-52 CD denotes 1
T408 43-50 NN denotes protein
T407 33-42 NN denotes activator
T406 29-32 CD denotes two
T405 25-28 CC denotes and
T404 23-24 -RRB- denotes )
T403 20-23 NN denotes CRE
T402 19-20 -LRB- denotes (
T401 11-18 NN denotes element
T400 2-10 NN denotes response
R210 T401 T400 arg1Of element,response
R211 T401 T402 arg1Of element,(
R212 T403 T402 arg2Of CRE,(
R213 T404 T402 arg3Of ),(
R214 T405 T421 arg1Of and,are
R215 T405 T422 arg1Of and,essential
R216 T407 T406 arg1Of activator,two
R217 T408 T409 arg1Of protein,1
R218 T411 T410 arg2Of AP-1,(
R219 T412 T410 arg3Of ),(
R220 T414 T405 arg2Of elements,and
R221 T414 T407 arg1Of elements,activator
R222 T414 T408 arg1Of elements,protein
R223 T414 T410 arg1Of elements,(
R224 T414 T413 arg1Of elements,response
R225 T414 T415 arg1Of elements,in
R226 T420 T415 arg2Of promoter,in
R227 T420 T416 arg1Of promoter,the
R228 T420 T417 arg1Of promoter,murine
R229 T420 T418 arg1Of promoter,SerpinB2
R230 T420 T419 arg1Of promoter,proximal
R233 T422 T421 arg2Of essential,are
R234 T422 T423 arg1Of essential,for
R235 T425 T423 arg2Of LPS-inducibility,for
R236 T425 T424 arg1Of LPS-inducibility,optimal
R237 T428 T426 arg1Of shift,Electrophoretic
R238 T428 T427 arg1Of shift,mobility
R239 T428 T429 arg1Of shift,(
R240 T428 T432 arg1Of shift,and
R241 T430 T429 arg2Of EMSA,(
R242 T431 T429 arg3Of ),(
R243 T434 T432 arg2Of immunoprecipitation,and
R244 T434 T433 arg1Of immunoprecipitation,chromatin
R245 T434 T435 arg1Of immunoprecipitation,(
R246 T436 T435 arg2Of ChIP,(
R247 T437 T435 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T168 92-100 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T541 33-52 http://www.uniprot.org/uniprot/P10145 denotes activator protein 1
T540 51-56 http://www.uniprot.org/uniprot/P05412 denotes 1 (AP
T534 92-100 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-CC

Id Subject Object Predicate Lexical cue
T190 205-214 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

simple1

Id Subject Object Predicate Lexical cue
T221 92-100 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T502 92-100 Protein denotes SerpinB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T612 92-100 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T578 92-100 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T713 81-118 Entity denotes the murine SerpinB2 proximal promoter
T716 20-23 Protein denotes CRE
T728 92-100 Protein denotes SerpinB2
T730 133-161 Entity denotes for optimal LPS-inducibility
T732 29-42 Entity denotes two activator
T742 43-59 Protein denotes protein 1 (AP-1)
T746 205-214 Entity denotes chromatin
T747 54-58 Protein denotes AP-1

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T653 85-118 Protein denotes murine SerpinB2 proximal promoter
T652 54-58 Protein denotes AP-1
T651 33-52 Protein denotes activator protein 1

testone

Id Subject Object Predicate Lexical cue
T31 92-100 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T82 92-100 Protein denotes SerpinB2
T60 92-100 Protein denotes SerpinB2