PMC:3589482 / 1144-1385
Annnotations
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T984 | 240-241 | -RRB- | denotes | ) |
| T983 | 236-240 | NNP | denotes | ChIP |
| T982 | 235-236 | -LRB- | denotes | ( |
| T981 | 215-234 | NN | denotes | immunoprecipitation |
| T980 | 205-214 | NN | denotes | chromatin |
| T979 | 201-204 | CC | denotes | and |
| T978 | 199-200 | -RRB- | denotes | ) |
| T977 | 195-199 | NNP | denotes | EMSA |
| T976 | 194-195 | -LRB- | denotes | ( |
| T975 | 188-193 | NN | denotes | shift |
| T974 | 179-187 | NN | denotes | mobility |
| T973 | 163-178 | JJ | denotes | Electrophoretic |
| T972 | 161-162 | . | denotes | . |
| T971 | 145-161 | NN | denotes | LPS-inducibility |
| T970 | 137-144 | JJ | denotes | optimal |
| T969 | 133-136 | IN | denotes | for |
| T968 | 123-132 | JJ | denotes | essential |
| T967 | 119-122 | VBP | denotes | are |
| T966 | 110-118 | NN | denotes | promoter |
| T965 | 101-109 | JJ | denotes | proximal |
| T964 | 92-100 | NNP | denotes | SerpinB2 |
| T963 | 85-91 | NN | denotes | murine |
| T962 | 81-84 | DT | denotes | the |
| T961 | 78-80 | IN | denotes | in |
| T960 | 69-77 | NNS | denotes | elements |
| T959 | 60-68 | NN | denotes | response |
| T958 | 58-59 | -RRB- | denotes | ) |
| T957 | 54-58 | NN | denotes | AP-1 |
| T956 | 53-54 | -LRB- | denotes | ( |
| T955 | 51-52 | CD | denotes | 1 |
| T954 | 43-50 | NN | denotes | protein |
| T953 | 33-42 | NN | denotes | activator |
| T952 | 29-32 | CD | denotes | two |
| T951 | 25-28 | CC | denotes | and |
| T950 | 23-24 | -RRB- | denotes | ) |
| T949 | 20-23 | NNP | denotes | CRE |
| T948 | 19-20 | -LRB- | denotes | ( |
| T947 | 11-18 | NN | denotes | element |
| T946 | 2-10 | NN | denotes | response |
| R533 | T946 | T947 | compound | response,element |
| R535 | T948 | T949 | punct | (,CRE |
| R536 | T949 | T947 | appos | CRE,element |
| R537 | T950 | T949 | punct | ),CRE |
| R538 | T951 | T947 | cc | and,element |
| R539 | T952 | T954 | nummod | two,protein |
| R540 | T953 | T954 | compound | activator,protein |
| R542 | T955 | T957 | nummod | 1,AP-1 |
| R543 | T956 | T957 | punct | (,AP-1 |
| R544 | T957 | T954 | appos | AP-1,protein |
| R545 | T958 | T957 | punct | ),AP-1 |
| R546 | T959 | T960 | compound | response,elements |
| R547 | T960 | T967 | nsubj | elements,are |
| R548 | T961 | T960 | prep | in,elements |
| R549 | T962 | T966 | det | the,promoter |
| R550 | T963 | T966 | nmod | murine,promoter |
| R551 | T964 | T966 | nmod | SerpinB2,promoter |
| R552 | T965 | T966 | amod | proximal,promoter |
| R553 | T966 | T961 | pobj | promoter,in |
| R555 | T968 | T967 | acomp | essential,are |
| R556 | T969 | T968 | prep | for,essential |
| R557 | T970 | T971 | amod | optimal,LPS-inducibility |
| R558 | T971 | T969 | pobj | LPS-inducibility,for |
| R560 | T973 | T975 | amod | Electrophoretic,shift |
| R561 | T974 | T975 | compound | mobility,shift |
| R563 | T976 | T977 | punct | (,EMSA |
| R564 | T977 | T975 | appos | EMSA,shift |
| R565 | T978 | T977 | punct | ),EMSA |
| R566 | T979 | T975 | cc | and,shift |
| R567 | T980 | T981 | compound | chromatin,immunoprecipitation |
| R568 | T981 | T975 | conj | immunoprecipitation,shift |
| R569 | T982 | T981 | punct | (,immunoprecipitation |
| R570 | T983 | T981 | appos | ChIP,immunoprecipitation |
| R571 | T984 | T981 | punct | ),immunoprecipitation |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T437 | 240-241 | -RRB- | denotes | ) |
| T436 | 236-240 | NN | denotes | ChIP |
| T435 | 235-236 | -LRB- | denotes | ( |
| T434 | 215-234 | NN | denotes | immunoprecipitation |
| T433 | 205-214 | NN | denotes | chromatin |
| T432 | 201-204 | CC | denotes | and |
| T431 | 199-200 | -RRB- | denotes | ) |
| T430 | 195-199 | NN | denotes | EMSA |
| T429 | 194-195 | -LRB- | denotes | ( |
| T428 | 188-193 | NN | denotes | shift |
| T427 | 179-187 | NN | denotes | mobility |
| T426 | 163-178 | JJ | denotes | Electrophoretic |
| T425 | 145-161 | NN | denotes | LPS-inducibility |
| T424 | 137-144 | JJ | denotes | optimal |
| T423 | 133-136 | IN | denotes | for |
| T422 | 123-132 | JJ | denotes | essential |
| T421 | 119-122 | VB | denotes | are |
| T420 | 110-118 | NN | denotes | promoter |
| T419 | 101-109 | JJ | denotes | proximal |
| T418 | 92-100 | NN | denotes | SerpinB2 |
| T417 | 85-91 | JJ | denotes | murine |
| T416 | 81-84 | DT | denotes | the |
| T415 | 78-80 | IN | denotes | in |
| T414 | 69-77 | NN | denotes | elements |
| T413 | 60-68 | NN | denotes | response |
| T412 | 58-59 | -RRB- | denotes | ) |
| T411 | 54-58 | NN | denotes | AP-1 |
| T410 | 53-54 | -LRB- | denotes | ( |
| T409 | 51-52 | CD | denotes | 1 |
| T408 | 43-50 | NN | denotes | protein |
| T407 | 33-42 | NN | denotes | activator |
| T406 | 29-32 | CD | denotes | two |
| T405 | 25-28 | CC | denotes | and |
| T404 | 23-24 | -RRB- | denotes | ) |
| T403 | 20-23 | NN | denotes | CRE |
| T402 | 19-20 | -LRB- | denotes | ( |
| T401 | 11-18 | NN | denotes | element |
| T400 | 2-10 | NN | denotes | response |
| R210 | T401 | T400 | arg1Of | element,response |
| R211 | T401 | T402 | arg1Of | element,( |
| R212 | T403 | T402 | arg2Of | CRE,( |
| R213 | T404 | T402 | arg3Of | ),( |
| R214 | T405 | T421 | arg1Of | and,are |
| R215 | T405 | T422 | arg1Of | and,essential |
| R216 | T407 | T406 | arg1Of | activator,two |
| R217 | T408 | T409 | arg1Of | protein,1 |
| R218 | T411 | T410 | arg2Of | AP-1,( |
| R219 | T412 | T410 | arg3Of | ),( |
| R220 | T414 | T405 | arg2Of | elements,and |
| R221 | T414 | T407 | arg1Of | elements,activator |
| R222 | T414 | T408 | arg1Of | elements,protein |
| R223 | T414 | T410 | arg1Of | elements,( |
| R224 | T414 | T413 | arg1Of | elements,response |
| R225 | T414 | T415 | arg1Of | elements,in |
| R226 | T420 | T415 | arg2Of | promoter,in |
| R227 | T420 | T416 | arg1Of | promoter,the |
| R228 | T420 | T417 | arg1Of | promoter,murine |
| R229 | T420 | T418 | arg1Of | promoter,SerpinB2 |
| R230 | T420 | T419 | arg1Of | promoter,proximal |
| R233 | T422 | T421 | arg2Of | essential,are |
| R234 | T422 | T423 | arg1Of | essential,for |
| R235 | T425 | T423 | arg2Of | LPS-inducibility,for |
| R236 | T425 | T424 | arg1Of | LPS-inducibility,optimal |
| R237 | T428 | T426 | arg1Of | shift,Electrophoretic |
| R238 | T428 | T427 | arg1Of | shift,mobility |
| R239 | T428 | T429 | arg1Of | shift,( |
| R240 | T428 | T432 | arg1Of | shift,and |
| R241 | T430 | T429 | arg2Of | EMSA,( |
| R242 | T431 | T429 | arg3Of | ),( |
| R243 | T434 | T432 | arg2Of | immunoprecipitation,and |
| R244 | T434 | T433 | arg1Of | immunoprecipitation,chromatin |
| R245 | T434 | T435 | arg1Of | immunoprecipitation,( |
| R246 | T436 | T435 | arg2Of | ChIP,( |
| R247 | T437 | T435 | arg3Of | ),( |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T168 | 92-100 | Protein | denotes | SerpinB2 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T541 | 33-52 | http://www.uniprot.org/uniprot/P10145 | denotes | activator protein 1 |
| T540 | 51-56 | http://www.uniprot.org/uniprot/P05412 | denotes | 1 (AP |
| T534 | 92-100 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T190 | 205-214 | http://purl.obolibrary.org/obo/GO_0000785 | denotes | chromatin |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T221 | 92-100 | Protein | denotes | SerpinB2 |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T502 | 92-100 | Protein | denotes | SerpinB2 |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T612 | 92-100 | Protein | denotes | SerpinB2 |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T578 | 92-100 | Protein | denotes | SerpinB2 |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T713 | 81-118 | Entity | denotes | the murine SerpinB2 proximal promoter |
| T716 | 20-23 | Protein | denotes | CRE |
| T728 | 92-100 | Protein | denotes | SerpinB2 |
| T730 | 133-161 | Entity | denotes | for optimal LPS-inducibility |
| T732 | 29-42 | Entity | denotes | two activator |
| T742 | 43-59 | Protein | denotes | protein 1 (AP-1) |
| T746 | 205-214 | Entity | denotes | chromatin |
| T747 | 54-58 | Protein | denotes | AP-1 |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T653 | 85-118 | Protein | denotes | murine SerpinB2 proximal promoter |
| T652 | 54-58 | Protein | denotes | AP-1 |
| T651 | 33-52 | Protein | denotes | activator protein 1 |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T31 | 92-100 | Protein | denotes | SerpinB2 |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T82 | 92-100 | Protein | denotes | SerpinB2 |
| T60 | 92-100 | Protein | denotes | SerpinB2 |