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PMC:3589482 / 11273-12596 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7602 45-46 -LRB- denotes (
T7601 38-44 NNP denotes Assays
T7600 27-37 NNP denotes Luciferase
T7599 23-26 CC denotes and
T7598 10-22 NNP denotes Transfection
T7597 0-9 NNP denotes Transient
T6597 1322-1323 . denotes .
T6596 1315-1322 NN denotes reagent
T6595 1304-1314 NN denotes microassay
T6594 1296-1303 NN denotes protein
T6593 1288-1295 NNP denotes Bio-Rad
T6592 1284-1287 DT denotes the
T6591 1278-1283 VBG denotes using
T6590 1267-1277 VBN denotes determined
T6589 1263-1266 VBD denotes was
T6588 1249-1262 NN denotes concentration
T6587 1241-1248 NN denotes Protein
T6586 1239-1240 . denotes .
T6585 1238-1239 -RRB- denotes )
T6584 1230-1238 NN denotes activity
T6583 1223-1229 JJ denotes pRL-TK
T6582 1214-1222 VBD denotes affected
T6581 1210-1213 NNP denotes LPS
T6580 1207-1209 CC denotes or
T6579 1205-1206 NN denotes β
T6578 1204-1205 : denotes -
T6577 1199-1204 NNP denotes C/EBP
T6576 1184-1198 JJ denotes co-transfected
T6575 1178-1183 WRB denotes where
T6574 1177-1178 -LRB- denotes (
T6573 1163-1176 NN denotes concentration
T6572 1155-1162 NN denotes protein
T6571 1146-1154 JJ denotes cellular
T6570 1143-1145 TO denotes to
T6569 1140-1142 CC denotes or
T6568 1134-1139 NNS denotes units
T6567 1128-1133 JJ denotes light
T6566 1117-1127 NN denotes luciferase
T6565 1109-1116 NN denotes renilla
T6564 1102-1108 JJ denotes pRL-TK
T6563 1099-1101 TO denotes to
T6562 1092-1098 RB denotes either
T6561 1081-1091 VBD denotes normalized
T6560 1075-1080 NNS denotes units
T6559 1069-1074 JJ denotes light
T6558 1058-1068 JJ denotes luciferase
T6557 1050-1057 RB denotes firefly
T6556 1047-1049 IN denotes of
T6555 1040-1046 NN denotes number
T6554 1036-1039 DT denotes the
T6553 1033-1035 IN denotes as
T6552 1023-1032 VBN denotes expressed
T6551 1020-1022 VBZ denotes is
T6550 1011-1019 NN denotes activity
T6549 1002-1010 NN denotes Promoter
T6548 1000-1001 . denotes .
T6547 989-1000 NNS denotes experiments
T6546 977-988 JJ denotes independent
T6545 971-976 CD denotes three
T6544 965-970 JJS denotes least
T6543 962-964 IN denotes at
T6542 959-961 IN denotes of
T6541 951-958 NNS denotes results
T6540 947-950 DT denotes the
T6539 937-946 VBP denotes represent
T6538 924-936 NNS denotes Measurements
T6537 922-923 . denotes .
T6536 921-922 -RRB- denotes )
T6535 914-921 NNP denotes Promega
T6534 913-914 -LRB- denotes (
T6533 909-912 NN denotes kit
T6532 902-908 NNP denotes System
T6531 896-901 NNP denotes Assay
T6530 887-895 NNP denotes Reporter
T6529 871-886 NNP denotes Dual-Luciferase
T6528 869-870 DT denotes a
T6527 863-868 VBG denotes using
T6526 854-862 VBN denotes measured
T6525 850-853 VBD denotes was
T6524 841-849 NN denotes activity
T6523 830-840 JJ denotes Luciferase
T6522 828-829 . denotes .
T6521 825-828 NNP denotes LPS
T6520 819-824 JJ denotes ng/ml
T6519 815-818 CD denotes 100
T6518 812-814 IN denotes of
T6517 804-811 NN denotes absence
T6516 801-803 CC denotes or
T6515 792-800 NN denotes presence
T6514 788-791 DT denotes the
T6513 785-787 IN denotes in
T6512 778-784 CC denotes either
T6511 776-777 NNP denotes C
T6510 775-776 CD denotes °
T6509 773-775 CD denotes 37
T6508 770-772 IN denotes at
T6507 759-769 NN denotes atmosphere
T6506 755-758 NN denotes air
T6505 744-754 JJ denotes humidified
T6504 742-743 NN denotes %
T6503 740-742 CD denotes 95
T6502 736-739 CC denotes and
T6501 732-735 CD denotes CO2
T6500 730-731 NN denotes %
T6499 729-730 CD denotes 5
T6498 727-728 DT denotes a
T6497 724-726 IN denotes in
T6496 720-723 NNS denotes hrs
T6495 717-719 CD denotes 16
T6494 707-716 VBD denotes incubated
T6493 703-706 CC denotes and
T6492 697-702 NNS denotes pools
T6491 692-696 NN denotes cell
T6490 682-691 JJ denotes identical
T6489 678-681 CD denotes two
T6488 673-677 IN denotes into
T6487 665-672 VBN denotes divided
T6486 663-664 , denotes ,
T6485 657-663 VBZ denotes plates
T6484 649-656 NN denotes culture
T6483 642-648 NN denotes tissue
T6482 635-641 JJ denotes 6-well
T6481 632-634 IN denotes in
T6480 626-631 NNS denotes media
T6479 615-625 JJ denotes pre-warmed
T6478 612-614 IN denotes of
T6477 609-611 NN denotes ml
T6476 606-608 CD denotes 10
T6475 603-605 TO denotes to
T6474 591-602 VBN denotes transferred
T6473 586-590 VBD denotes were
T6472 580-585 NNS denotes cells
T6471 568-579 JJ denotes Transfected
T6451 442-450 VBN denotes included
T6450 438-441 VBD denotes was
T6449 429-437 NN denotes enhancer
T6448 425-428 CC denotes and
T6447 416-424 NN denotes promoter
T6446 411-415 NNP denotes SV40
T6445 407-410 DT denotes the
T6444 399-406 VBZ denotes encodes
T6443 393-398 WDT denotes which
T6442 385-392 NN denotes plasmid
T6441 377-384 NN denotes control
T6440 372-376 JJ denotes pGL3
T6439 370-371 . denotes .
T6438 369-370 -RRB- denotes )
T6437 366-369 NNP denotes µFd
T6436 362-365 CD denotes 960
T6435 360-361 , denotes ,
T6434 358-360 NNP denotes kV
T6433 353-357 CD denotes 0.25
T6432 352-353 -LRB- denotes (
T6431 343-351 NNP denotes Extender
T6430 331-342 NNP denotes Capacitance
T6429 329-330 DT denotes a
T6428 324-328 IN denotes with
T6427 317-323 NNP denotes Pulser
T6426 312-316 NNP denotes Gene
T6425 304-311 NNP denotes Bio-Rad
T6424 302-303 DT denotes a
T6423 296-301 VBG denotes using
T6422 280-295 NN denotes electroporation
T6421 277-279 IN denotes by
T6420 275-276 -RRB- denotes )
T6419 273-275 NN denotes µg
T6418 271-272 CD denotes 2
T6417 270-271 -LRB- denotes (
T6416 262-269 NN denotes plasmid
T6415 253-261 NN denotes reporter
T6414 245-252 NN denotes control
T6413 236-244 JJ denotes internal
T6412 234-235 -RRB- denotes )
T6411 227-234 NNP denotes Promega
T6410 226-227 -LRB- denotes (
T6409 224-225 -RRB- denotes )
T6408 222-224 NNP denotes TK
T6407 221-222 -LRB- denotes (
T6406 214-220 NN denotes kinase
T6405 200-213 JJ denotes pRL-thymidine
T6404 196-199 DT denotes the
T6403 191-195 IN denotes with
T6402 185-190 IN denotes along
T6401 183-184 -RRB- denotes )
T6400 181-183 NN denotes µg
T6399 178-180 CD denotes 20
T6398 177-178 -LRB- denotes (
T6397 169-176 NN denotes plasmid
T6396 160-168 NN denotes reporter
T6395 149-159 NN denotes luciferase
T6394 139-148 VBN denotes indicated
T6393 135-138 DT denotes the
T6392 130-134 IN denotes with
T6391 118-129 VBN denotes transfected
T6390 113-117 VBD denotes were
T6389 107-112 NN denotes phase
T6388 103-106 VB denotes log
T6387 100-102 IN denotes in
T6386 92-99 VBG denotes growing
T6385 90-91 -RRB- denotes )
T6384 87-90 CD denotes 107
T6383 86-87 CD denotes ×
T6382 85-86 CD denotes 2
T6381 84-85 -LRB- denotes (
T6380 78-83 NNS denotes cells
T6379 72-77 CD denotes 264.7
T6378 68-71 NNP denotes RAW
T6377 66-67 -RRB- denotes )
T6376 55-66 NNP denotes Macrophages
T6375 52-54 CD denotes .7
T6374 46-52 NNP denotes RAW264
T6373 45-46 -LRB- denotes (
T6372 38-44 NNP denotes Assays
T6371 27-37 NNP denotes Luciferase
T6370 23-26 CC denotes and
T6369 10-22 NNP denotes Transfection
T6368 0-9 NNP denotes Transient
T6470 566-567 . denotes .
T6469 556-566 NNS denotes activities
T6468 547-555 NN denotes enhancer
T6467 543-546 CC denotes and
T6466 534-542 NN denotes promoter
T6465 530-533 IN denotes for
T6464 521-529 NN denotes standard
T6463 512-520 JJ denotes internal
T6462 509-511 DT denotes an
T6461 506-508 IN denotes as
T6460 502-505 CC denotes and
T6459 500-501 , denotes ,
T6458 490-500 NN denotes efficiency
T6457 477-489 NN denotes transfection
T6456 473-476 IN denotes for
T6455 465-472 NN denotes control
T6454 456-464 JJ denotes positive
T6453 454-455 DT denotes a
T6452 451-453 IN denotes as
R4506 T6368 T6369 compound Transient,Transfection
R4507 T6369 T6386 nsubj Transfection,growing
R4508 T6370 T6369 cc and,Transfection
R4509 T6371 T6372 compound Luciferase,Assays
R4510 T6372 T6369 conj Assays,Transfection
R4511 T6373 T6376 punct (,Macrophages
R4512 T6374 T6376 nmod RAW264,Macrophages
R4513 T6375 T6376 nummod .7,Macrophages
R4514 T6376 T6372 appos Macrophages,Assays
R4515 T6377 T6376 punct ),Macrophages
R4516 T6378 T6372 conj RAW,Assays
R4517 T6379 T6378 nummod 264.7,RAW
R4518 T6380 T6369 appos cells,Transfection
R4519 T6381 T6380 punct (,cells
R4520 T6382 T6384 nummod 2,107
R4521 T6383 T6384 nummod ×,107
R4522 T6384 T6380 appos 107,cells
R4523 T6385 T6380 punct ),cells
R4524 T6386 T6386 ROOT growing,growing
R4525 T6387 T6386 prep in,growing
R4526 T6388 T6389 compound log,phase
R4527 T6389 T6387 pobj phase,in
R4528 T6390 T6391 auxpass were,transfected
R4529 T6391 T6386 conj transfected,growing
R4530 T6392 T6391 prep with,transfected
R4531 T6393 T6397 det the,plasmid
R4532 T6394 T6397 amod indicated,plasmid
R4533 T6395 T6397 compound luciferase,plasmid
R4534 T6396 T6397 compound reporter,plasmid
R4535 T6397 T6392 pobj plasmid,with
R4536 T6398 T6397 punct (,plasmid
R4537 T6399 T6400 nummod 20,µg
R4538 T6400 T6397 appos µg,plasmid
R4539 T6401 T6397 punct ),plasmid
R4540 T6402 T6391 prep along,transfected
R4541 T6403 T6402 prep with,along
R4542 T6404 T6406 det the,kinase
R4543 T6405 T6406 amod pRL-thymidine,kinase
R4544 T6406 T6403 pobj kinase,with
R4545 T6407 T6406 punct (,kinase
R4546 T6408 T6406 appos TK,kinase
R4547 T6409 T6406 punct ),kinase
R4548 T6410 T6411 punct (,Promega
R4549 T6411 T6406 appos Promega,kinase
R4550 T6412 T6411 punct ),Promega
R4551 T6413 T6414 amod internal,control
R4552 T6414 T6416 compound control,plasmid
R4553 T6415 T6416 compound reporter,plasmid
R4554 T6416 T6406 appos plasmid,kinase
R4555 T6417 T6419 punct (,µg
R4556 T6418 T6419 nummod 2,µg
R4557 T6419 T6416 appos µg,plasmid
R4558 T6420 T6406 punct ),kinase
R4559 T6421 T6391 agent by,transfected
R4560 T6422 T6421 pobj electroporation,by
R4561 T6423 T6391 advcl using,transfected
R4562 T6424 T6427 det a,Pulser
R4563 T6425 T6427 compound Bio-Rad,Pulser
R4564 T6426 T6427 compound Gene,Pulser
R4565 T6427 T6423 dobj Pulser,using
R4566 T6428 T6423 prep with,using
R4567 T6429 T6431 det a,Extender
R4568 T6430 T6431 compound Capacitance,Extender
R4569 T6431 T6428 pobj Extender,with
R4570 T6432 T6434 punct (,kV
R4571 T6433 T6434 nummod 0.25,kV
R4572 T6434 T6437 npadvmod kV,µFd
R4573 T6435 T6437 punct ",",µFd
R4574 T6436 T6437 nummod 960,µFd
R4575 T6437 T6437 ROOT µFd,µFd
R4576 T6438 T6437 punct ),µFd
R4577 T6439 T6386 punct .,growing
R4578 T6440 T6442 amod pGL3,plasmid
R4579 T6441 T6442 compound control,plasmid
R4580 T6442 T6451 nsubjpass plasmid,included
R4581 T6443 T6444 nsubj which,encodes
R4582 T6444 T6442 relcl encodes,plasmid
R4583 T6445 T6447 det the,promoter
R4584 T6446 T6447 compound SV40,promoter
R4585 T6447 T6444 dobj promoter,encodes
R4586 T6448 T6447 cc and,promoter
R4587 T6449 T6447 conj enhancer,promoter
R4588 T6450 T6451 auxpass was,included
R4589 T6451 T6451 ROOT included,included
R4590 T6452 T6451 prep as,included
R4591 T6453 T6455 det a,control
R4592 T6454 T6455 amod positive,control
R4593 T6455 T6452 pobj control,as
R4594 T6456 T6455 prep for,control
R4595 T6457 T6458 compound transfection,efficiency
R4596 T6458 T6456 pobj efficiency,for
R4597 T6459 T6451 punct ",",included
R4598 T6460 T6451 cc and,included
R4599 T6461 T6451 prep as,included
R4600 T6462 T6464 det an,standard
R4601 T6463 T6464 amod internal,standard
R4602 T6464 T6461 pobj standard,as
R4603 T6465 T6464 prep for,standard
R4604 T6466 T6469 nmod promoter,activities
R4605 T6467 T6466 cc and,promoter
R4606 T6468 T6466 conj enhancer,promoter
R4607 T6469 T6465 pobj activities,for
R4608 T6470 T6451 punct .,included
R4609 T6471 T6472 amod Transfected,cells
R4610 T6472 T6474 nsubjpass cells,transferred
R4611 T6473 T6474 auxpass were,transferred
R4612 T6474 T6474 ROOT transferred,transferred
R4613 T6475 T6474 prep to,transferred
R4614 T6476 T6477 nummod 10,ml
R4615 T6477 T6475 pobj ml,to
R4616 T6478 T6477 prep of,ml
R4617 T6479 T6480 amod pre-warmed,media
R4618 T6480 T6478 pobj media,of
R4619 T6481 T6477 prep in,ml
R4620 T6482 T6484 amod 6-well,culture
R4621 T6483 T6484 compound tissue,culture
R4622 T6484 T6485 compound culture,plates
R4623 T6485 T6481 pobj plates,in
R4624 T6486 T6485 punct ",",plates
R4625 T6487 T6474 conj divided,transferred
R4626 T6488 T6487 prep into,divided
R4627 T6489 T6492 nummod two,pools
R4628 T6490 T6492 amod identical,pools
R4629 T6491 T6492 compound cell,pools
R4630 T6492 T6488 pobj pools,into
R4631 T6493 T6487 cc and,divided
R4632 T6494 T6487 conj incubated,divided
R4633 T6495 T6496 nummod 16,hrs
R4634 T6496 T6494 dobj hrs,incubated
R4635 T6497 T6494 prep in,incubated
R4636 T6498 T6507 det a,atmosphere
R4637 T6499 T6500 nummod 5,%
R4638 T6500 T6507 nmod %,atmosphere
R4639 T6501 T6504 nummod CO2,%
R4640 T6502 T6501 cc and,CO2
R4641 T6503 T6504 nummod 95,%
R4642 T6504 T6507 nmod %,atmosphere
R4643 T6505 T6507 amod humidified,atmosphere
R4644 T6506 T6507 compound air,atmosphere
R4645 T6507 T6497 pobj atmosphere,in
R4646 T6508 T6494 prep at,incubated
R4647 T6509 T6510 nummod 37,°
R4648 T6510 T6508 pobj °,at
R4649 T6511 T6494 conj C,incubated
R4650 T6512 T6513 preconj either,in
R4651 T6513 T6494 prep in,incubated
R4652 T6514 T6515 det the,presence
R4653 T6515 T6513 pobj presence,in
R4654 T6516 T6515 cc or,presence
R4655 T6517 T6515 conj absence,presence
R4656 T6518 T6517 prep of,absence
R4657 T6519 T6521 nummod 100,LPS
R4658 T6520 T6521 amod ng/ml,LPS
R4659 T6521 T6518 pobj LPS,of
R4660 T6522 T6474 punct .,transferred
R4661 T6523 T6524 amod Luciferase,activity
R4662 T6524 T6526 nsubjpass activity,measured
R4663 T6525 T6526 auxpass was,measured
R4664 T6526 T6526 ROOT measured,measured
R4665 T6527 T6526 advcl using,measured
R4666 T6528 T6533 det a,kit
R4667 T6529 T6532 compound Dual-Luciferase,System
R4668 T6530 T6532 compound Reporter,System
R4669 T6531 T6532 compound Assay,System
R4670 T6532 T6533 compound System,kit
R4671 T6533 T6527 dobj kit,using
R4672 T6534 T6533 punct (,kit
R4673 T6535 T6533 appos Promega,kit
R4674 T6536 T6533 punct ),kit
R4675 T6537 T6526 punct .,measured
R4676 T6538 T6539 nsubj Measurements,represent
R4677 T6539 T6539 ROOT represent,represent
R4678 T6540 T6541 det the,results
R4679 T6541 T6539 dobj results,represent
R4680 T6542 T6541 prep of,results
R4681 T6543 T6544 advmod at,least
R4682 T6544 T6545 advmod least,three
R4683 T6545 T6547 nummod three,experiments
R4684 T6546 T6547 amod independent,experiments
R4685 T6547 T6542 pobj experiments,of
R4686 T6548 T6539 punct .,represent
R4687 T6549 T6550 compound Promoter,activity
R4688 T6550 T6552 nsubjpass activity,expressed
R4689 T6551 T6552 auxpass is,expressed
R4690 T6552 T6552 ROOT expressed,expressed
R4691 T6553 T6552 prep as,expressed
R4692 T6554 T6555 det the,number
R4693 T6555 T6553 pobj number,as
R4694 T6556 T6555 prep of,number
R4695 T6557 T6558 advmod firefly,luciferase
R4696 T6558 T6560 amod luciferase,units
R4697 T6559 T6560 amod light,units
R4698 T6560 T6556 pobj units,of
R4699 T6561 T6552 conj normalized,expressed
R4700 T6562 T6561 advmod either,normalized
R4701 T6563 T6564 aux to,pRL-TK
R4702 T6564 T6562 xcomp pRL-TK,either
R4703 T6565 T6566 compound renilla,luciferase
R4704 T6566 T6568 amod luciferase,units
R4705 T6567 T6568 amod light,units
R4706 T6568 T6564 dobj units,pRL-TK
R4707 T6569 T6564 cc or,pRL-TK
R4708 T6570 T6564 conj to,pRL-TK
R4709 T6571 T6573 amod cellular,concentration
R4710 T6572 T6573 compound protein,concentration
R4711 T6573 T6570 pobj concentration,to
R4712 T6574 T6573 punct (,concentration
R4713 T6575 T6582 advmod where,affected
R4714 T6576 T6582 nsubj co-transfected,affected
R4715 T6577 T6579 compound C/EBP,β
R4716 T6578 T6579 punct -,β
R4717 T6579 T6582 nsubj β,affected
R4718 T6580 T6579 cc or,β
R4719 T6581 T6579 conj LPS,β
R4720 T6582 T6573 relcl affected,concentration
R4721 T6583 T6584 amod pRL-TK,activity
R4722 T6584 T6582 dobj activity,affected
R4723 T6585 T6573 punct ),concentration
R4724 T6586 T6552 punct .,expressed
R4725 T6587 T6588 compound Protein,concentration
R4726 T6588 T6590 nsubjpass concentration,determined
R4727 T6589 T6590 auxpass was,determined
R4728 T6590 T6590 ROOT determined,determined
R4729 T6591 T6590 advcl using,determined
R4730 T6592 T6594 det the,protein
R4731 T6593 T6594 compound Bio-Rad,protein
R4732 T6594 T6591 dobj protein,using
R4733 T6595 T6596 compound microassay,reagent
R4734 T6596 T6594 appos reagent,protein
R4735 T6597 T6590 punct .,determined
R5403 T7597 T7598 compound Transient,Transfection
R5404 T7598 T7598 ROOT Transfection,Transfection
R5405 T7599 T7598 cc and,Transfection
R5406 T7600 T7601 compound Luciferase,Assays
R5407 T7601 T7598 conj Assays,Transfection

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7279 45-46 -LRB- denotes (
T7278 38-44 NN denotes Assays
T7277 27-37 NN denotes Luciferase
T7276 23-26 CC denotes and
T7275 10-22 NN denotes Transfection
T7274 0-9 JJ denotes Transient
T6246 1315-1322 NN denotes reagent
T6245 1304-1314 NN denotes microassay
T6244 1296-1303 NN denotes protein
T6243 1288-1295 JJ denotes Bio-Rad
T6242 1284-1287 DT denotes the
T6241 1278-1283 VB denotes using
T6240 1267-1277 VB denotes determined
T6239 1263-1266 VB denotes was
T6238 1249-1262 NN denotes concentration
T6237 1241-1248 NN denotes Protein
T6236 1238-1239 -RRB- denotes )
T6225 1155-1162 NN denotes protein
T6224 1146-1154 JJ denotes cellular
T6223 1143-1145 TO denotes to
T6222 1140-1142 CC denotes or
T6221 1134-1139 NN denotes units
T6220 1128-1133 JJ denotes light
T6219 1117-1127 NN denotes luciferase
T6218 1109-1116 NN denotes renilla
T6217 1102-1108 NN denotes pRL-TK
T6216 1099-1101 TO denotes to
T6215 1092-1098 CC denotes either
T6214 1081-1091 VB denotes normalized
T6213 1075-1080 NN denotes units
T6212 1069-1074 JJ denotes light
T6211 1058-1068 NN denotes luciferase
T6210 1050-1057 JJ denotes firefly
T6209 1047-1049 IN denotes of
T6208 1040-1046 NN denotes number
T6207 1036-1039 DT denotes the
T6206 1033-1035 IN denotes as
T6205 1023-1032 VB denotes expressed
T6204 1020-1022 VB denotes is
T6203 1011-1019 NN denotes activity
T6202 1002-1010 NN denotes Promoter
T6201 989-1000 NN denotes experiments
T6200 977-988 JJ denotes independent
T6199 971-976 CD denotes three
T6198 965-970 JJ denotes least
T6197 962-964 IN denotes at
T6196 959-961 IN denotes of
T6195 951-958 NN denotes results
T6194 947-950 DT denotes the
T6193 937-946 VB denotes represent
T6192 924-936 NN denotes Measurements
T6191 921-922 -RRB- denotes )
T6190 914-921 NN denotes Promega
T6189 913-914 -LRB- denotes (
T6188 909-912 NN denotes kit
T6187 902-908 NN denotes System
T6186 896-901 NNP denotes Assay
T6185 887-895 NNP denotes Reporter
T6184 871-886 NNP denotes Dual-Luciferase
T6183 869-870 DT denotes a
T6182 863-868 VB denotes using
T6181 854-862 VB denotes measured
T6180 850-853 VB denotes was
T6179 841-849 NN denotes activity
T6178 830-840 NN denotes Luciferase
T6177 825-828 NN denotes LPS
T6176 819-824 NN denotes ng/ml
T6175 815-818 CD denotes 100
T6174 812-814 IN denotes of
T6173 804-811 NN denotes absence
T6172 801-803 CC denotes or
T6171 792-800 NN denotes presence
T6170 788-791 DT denotes the
T6169 785-787 IN denotes in
T6168 778-784 CC denotes either
T6167 773-777 NN denotes 37°C
T6166 770-772 IN denotes at
T6165 759-769 NN denotes atmosphere
T6164 755-758 NN denotes air
T6163 744-754 VB denotes humidified
T6162 742-743 NN denotes %
T6161 740-742 CD denotes 95
T6160 736-739 CC denotes and
T6159 732-735 NN denotes CO2
T6158 730-731 NN denotes %
T6157 729-730 CD denotes 5
T6156 727-728 DT denotes a
T6155 724-726 IN denotes in
T6154 720-723 NN denotes hrs
T6153 717-719 CD denotes 16
T6152 707-716 VB denotes incubated
T6151 703-706 CC denotes and
T6150 697-702 NN denotes pools
T6149 692-696 NN denotes cell
T6148 682-691 JJ denotes identical
T6147 678-681 CD denotes two
T6146 673-677 IN denotes into
T6145 665-672 VB denotes divided
T6144 663-664 -COMMA- denotes ,
T6143 657-663 NN denotes plates
T6142 649-656 NN denotes culture
T6141 642-648 NN denotes tissue
T6140 635-641 JJ denotes 6-well
T6139 632-634 IN denotes in
T6138 626-631 NN denotes media
T6137 615-625 JJ denotes pre-warmed
T6136 612-614 IN denotes of
T6135 609-611 NN denotes ml
T6134 606-608 CD denotes 10
T6133 603-605 TO denotes to
T6132 591-602 VB denotes transferred
T6131 586-590 VB denotes were
T6130 580-585 NN denotes cells
T6129 568-579 VB denotes Transfected
T6128 532-542 NN denotes r promoter
T6127 524-532 NN denotes ndard fo
T6126 521-524 CC denotes sta
T6125 512-520 NN denotes internal
T6124 509-512 IN denotes an
T6123 500-508 NN denotes , and as
T6122 492-500 JJ denotes ficiency
T6121 490-492 DT denotes ef
T6120 487-489 IN denotes on
T6119 484-487 CC denotes cti
T6118 483-484 -COMMA- denotes e
T6117 473-483 NN denotes for transf
T6116 461-473 NN denotes ive control
T6115 458-461 IN denotes sit
T6114 451-458 NN denotes as a po
T6113 442-450 JJ denotes included
T6112 440-441 DT denotes s
T6111 438-440 IN denotes wa
T6110 430-438 VB denotes nhancer
T6109 427-430 VB denotes d e
T6108 419-427 NN denotes moter an
T6107 416-419 CC denotes pro
T6106 407-415 NN denotes the SV40
T6105 403-407 NN denotes des
T6104 400-403 DT denotes nco
T6103 393-400 VB denotes which e
T6102 388-393 WDT denotes smid
T6101 381-388 NN denotes rol pla
T6100 374-381 NN denotes L3 cont
T6099 370-374 NN denotes . pG
T6098 369-370 -RRB- denotes )
T6097 366-369 NNP denotes µFd
T6096 362-365 CD denotes 960
T6095 360-361 -COMMA- denotes ,
T6094 358-360 NN denotes kV
T6093 353-357 CD denotes 0.25
T6092 352-353 -LRB- denotes (
T6091 343-351 NNP denotes Extender
T6090 331-342 NNP denotes Capacitance
T6089 329-330 DT denotes a
T6088 324-328 IN denotes with
T6087 317-323 NNP denotes Pulser
T6086 312-316 NNP denotes Gene
T6085 304-311 NNP denotes Bio-Rad
T6084 302-303 DT denotes a
T6083 296-301 VB denotes using
T6082 280-295 NN denotes electroporation
T6081 277-279 IN denotes by
T6080 275-276 -RRB- denotes )
T6079 273-275 NN denotes µg
T6078 271-272 CD denotes 2
T6077 270-271 -LRB- denotes (
T6076 262-269 NN denotes plasmid
T6075 253-261 NN denotes reporter
T6074 245-252 NN denotes control
T6073 236-244 JJ denotes internal
T6072 234-235 -RRB- denotes )
T6071 227-234 NN denotes Promega
T6070 226-227 -LRB- denotes (
T6069 224-225 -RRB- denotes )
T6068 222-224 NN denotes TK
T6067 221-222 -LRB- denotes (
T6066 214-220 NN denotes kinase
T6065 200-213 NN denotes pRL-thymidine
T6064 196-199 DT denotes the
T6063 191-195 IN denotes with
T6062 185-190 IN denotes along
T6061 183-184 -RRB- denotes )
T6060 181-183 NN denotes µg
T6059 178-180 CD denotes 20
T6058 177-178 -LRB- denotes (
T6057 169-176 NN denotes plasmid
T6056 160-168 NN denotes reporter
T6055 149-159 NN denotes luciferase
T6054 139-148 VB denotes indicated
T6053 135-138 DT denotes the
T6052 130-134 IN denotes with
T6051 118-129 VB denotes transfected
T6050 113-117 VB denotes were
T6049 107-112 NN denotes phase
T6048 103-106 NN denotes log
T6047 100-102 IN denotes in
T6046 92-99 VB denotes growing
T6045 90-91 -RRB- denotes )
T6044 85-90 CD denotes 2×107
T6043 84-85 -LRB- denotes (
T6042 78-83 NN denotes cells
T6041 72-77 CD denotes 264.7
T6040 68-71 NN denotes RAW
T6039 66-67 -RRB- denotes )
T6038 55-66 NN denotes Macrophages
T6037 46-54 NN denotes RAW264.7
T6036 45-46 -LRB- denotes (
T6035 38-44 NN denotes Assays
T6034 27-37 NN denotes Luciferase
T6033 23-26 CC denotes and
T6032 10-22 NN denotes Transfection
T6031 0-9 JJ denotes Transient
T6235 1230-1238 NN denotes activity
T6234 1223-1229 NN denotes pRL-TK
T6233 1214-1222 VB denotes affected
T6232 1210-1213 NN denotes LPS
T6231 1207-1209 CC denotes or
T6230 1199-1206 NN denotes C/EBP-β
T6229 1184-1198 VB denotes co-transfected
T6228 1178-1183 WRB denotes where
T6227 1177-1178 -LRB- denotes (
T6226 1163-1176 NN denotes concentration
R4268 T6032 T6033 arg1Of Transfection,and
R4269 T6034 T6033 arg2Of Luciferase,and
R4270 T6035 T6031 arg1Of Assays,Transient
R4271 T6035 T6032 arg1Of Assays,Transfection
R4272 T6035 T6034 arg1Of Assays,Luciferase
R4273 T6035 T6036 arg1Of Assays,(
R4274 T6038 T6036 arg2Of Macrophages,(
R4275 T6038 T6037 arg1Of Macrophages,RAW264.7
R4276 T6039 T6036 arg3Of ),(
R4277 T6042 T6040 arg1Of cells,RAW
R4278 T6042 T6041 arg1Of cells,264.7
R4279 T6042 T6043 arg1Of cells,(
R4280 T6042 T6046 arg1Of cells,growing
R4281 T6042 T6050 arg1Of cells,were
R4282 T6042 T6051 arg2Of cells,transfected
R4283 T6044 T6043 arg2Of 2×107,(
R4284 T6045 T6043 arg3Of ),(
R4285 T6046 T6047 arg1Of growing,in
R4286 T6049 T6047 arg2Of phase,in
R4287 T6049 T6048 arg1Of phase,log
R4288 T6051 T6050 arg2Of transfected,were
R4289 T6051 T6052 arg1Of transfected,with
R4290 T6051 T6062 arg1Of transfected,along
R4291 T6051 T6107 arg1Of transfected,pro
R4292 T6057 T6052 arg2Of plasmid,with
R4293 T6057 T6053 arg1Of plasmid,the
R4294 T6057 T6054 arg2Of plasmid,indicated
R4295 T6057 T6055 arg1Of plasmid,luciferase
R4296 T6057 T6056 arg1Of plasmid,reporter
R4297 T6057 T6058 arg1Of plasmid,(
R4298 T6060 T6058 arg2Of µg,(
R4299 T6060 T6059 arg1Of µg,20
R4300 T6061 T6058 arg3Of ),(
R4301 T6062 T6063 arg1Of along,with
R4302 T6066 T6065 arg1Of kinase,pRL-thymidine
R4303 T6066 T6067 arg1Of kinase,(
R4304 T6068 T6067 arg2Of TK,(
R4305 T6069 T6067 arg3Of ),(
R4306 T6071 T6070 arg2Of Promega,(
R4307 T6072 T6070 arg3Of ),(
R4308 T6076 T6063 arg2Of plasmid,with
R4309 T6076 T6064 arg1Of plasmid,the
R4310 T6076 T6066 arg1Of plasmid,kinase
R4311 T6076 T6070 arg1Of plasmid,(
R4312 T6076 T6073 arg1Of plasmid,internal
R4313 T6076 T6074 arg1Of plasmid,control
R4314 T6076 T6075 arg1Of plasmid,reporter
R4315 T6076 T6077 arg1Of plasmid,(
R4316 T6076 T6081 arg1Of plasmid,by
R4317 T6079 T6077 arg2Of µg,(
R4318 T6079 T6078 arg1Of µg,2
R4319 T6080 T6077 arg3Of ),(
R4320 T6082 T6081 arg2Of electroporation,by
R4321 T6082 T6083 arg1Of electroporation,using
R4322 T6083 T6088 arg1Of using,with
R4323 T6087 T6083 arg2Of Pulser,using
R4324 T6087 T6084 arg1Of Pulser,a
R4325 T6087 T6085 arg1Of Pulser,Bio-Rad
R4326 T6087 T6086 arg1Of Pulser,Gene
R4327 T6091 T6090 arg1Of Extender,Capacitance
R4328 T6091 T6092 arg1Of Extender,(
R4329 T6094 T6092 arg2Of kV,(
R4330 T6094 T6093 arg1Of kV,0.25
R4331 T6094 T6095 arg1Of kV,","
R4332 T6094 T6097 arg1Of kV,µFd
R4333 T6096 T6095 arg2Of 960,","
R4334 T6098 T6092 arg3Of ),(
R4335 T6101 T6088 arg2Of rol pla,with
R4336 T6101 T6089 arg1Of rol pla,a
R4337 T6101 T6091 arg1Of rol pla,Extender
R4338 T6101 T6099 arg1Of rol pla,. pG
R4339 T6101 T6100 arg1Of rol pla,L3 cont
R4340 T6101 T6102 arg1Of rol pla,smid
R4341 T6101 T6103 arg1Of rol pla,which e
R4342 T6106 T6103 arg2Of the SV40,which e
R4343 T6106 T6104 arg1Of the SV40,nco
R4344 T6106 T6105 arg1Of the SV40,des
R4345 T6108 T6109 arg1Of moter an,d e
R4346 T6108 T6110 arg2Of moter an,nhancer
R4347 T6110 T6107 arg2Of nhancer ,pro
R4348 T6110 T6109 arg2Of nhancer ,d e
R4349 T6110 T6111 arg1Of nhancer ,wa
R4350 T6110 T6120 arg1Of nhancer ,on
R4351 T6111 T6119 arg1Of wa,cti
R4352 T6114 T6111 arg2Of as a po,wa
R4353 T6114 T6112 arg1Of as a po,s
R4354 T6114 T6113 arg1Of as a po,included
R4355 T6114 T6115 arg1Of as a po,sit
R4356 T6117 T6115 arg2Of for transf,sit
R4357 T6117 T6116 arg1Of for transf,ive control
R4358 T6119 T6118 arg1Of cti,e
R4359 T6120 T6119 arg2Of on,cti
R4360 T6123 T6120 arg2Of ", and as",on
R4361 T6123 T6121 arg1Of ", and as",ef
R4362 T6123 T6122 arg1Of ", and as",ficiency
R4363 T6123 T6124 arg1Of ", and as",an
R4364 T6125 T6126 arg1Of internal,sta
R4365 T6127 T6126 arg2Of ndard fo,sta
R4366 T6128 T6124 arg2Of r promoter,an
R4367 T6128 T6125 arg1Of r promoter,internal
R4368 T6128 T6127 arg1Of r promoter,ndard fo
R4369 T6130 T6129 arg2Of cells,Transfected
R4370 T6130 T6131 arg1Of cells,were
R4371 T6130 T6132 arg2Of cells,transferred
R4372 T6132 T6131 arg2Of transferred,were
R4373 T6132 T6133 arg1Of transferred,to
R4374 T6132 T6160 arg1Of transferred,and
R4375 T6135 T6133 arg2Of ml,to
R4376 T6135 T6134 arg1Of ml,10
R4377 T6135 T6136 arg1Of ml,of
R4378 T6135 T6139 arg1Of ml,in
R4379 T6135 T6144 arg1Of ml,","
R4380 T6135 T6145 arg2Of ml,divided
R4381 T6138 T6136 arg2Of media,of
R4382 T6138 T6137 arg1Of media,pre-warmed
R4383 T6143 T6139 arg2Of plates,in
R4384 T6143 T6140 arg1Of plates,6-well
R4385 T6143 T6141 arg1Of plates,tissue
R4386 T6143 T6142 arg1Of plates,culture
R4387 T6145 T6146 arg1Of divided,into
R4388 T6145 T6155 arg1Of divided,in
R4389 T6150 T6147 arg1Of pools,two
R4390 T6150 T6148 arg1Of pools,identical
R4391 T6150 T6149 arg1Of pools,cell
R4392 T6150 T6151 arg1Of pools,and
R4393 T6151 T6146 arg2Of and,into
R4394 T6154 T6151 arg2Of hrs,and
R4395 T6154 T6152 arg2Of hrs,incubated
R4396 T6154 T6153 arg1Of hrs,16
R4397 T6157 T6158 arg1Of 5,%
R4398 T6159 T6155 arg2Of CO2,in
R4399 T6159 T6156 arg1Of CO2,a
R4400 T6159 T6157 arg1Of CO2,5
R4401 T6162 T6161 arg1Of %,95
R4402 T6162 T6163 arg1Of %,humidified
R4403 T6163 T6160 arg2Of humidified,and
R4404 T6163 T6166 arg1Of humidified,at
R4405 T6163 T6169 arg1Of humidified,in
R4406 T6165 T6163 arg2Of atmosphere,humidified
R4407 T6165 T6164 arg1Of atmosphere,air
R4408 T6167 T6166 arg2Of 37°C,at
R4409 T6169 T6168 arg1Of in,either
R4410 T6171 T6172 arg1Of presence,or
R4411 T6172 T6169 arg2Of or,in
R4412 T6172 T6170 arg1Of or,the
R4413 T6172 T6174 arg1Of or,of
R4414 T6173 T6172 arg2Of absence,or
R4415 T6175 T6176 arg1Of 100,ng/ml
R4416 T6177 T6174 arg2Of LPS,of
R4417 T6177 T6175 arg1Of LPS,100
R4418 T6179 T6178 arg1Of activity,Luciferase
R4419 T6179 T6180 arg1Of activity,was
R4420 T6179 T6181 arg2Of activity,measured
R4421 T6181 T6180 arg2Of measured,was
R4422 T6182 T6181 arg3Of using,measured
R4423 T6186 T6184 arg1Of Assay,Dual-Luciferase
R4424 T6186 T6185 arg1Of Assay,Reporter
R4425 T6188 T6182 arg2Of kit,using
R4426 T6188 T6183 arg1Of kit,a
R4427 T6188 T6186 arg1Of kit,Assay
R4428 T6188 T6187 arg1Of kit,System
R4429 T6188 T6189 arg1Of kit,(
R4430 T6190 T6189 arg2Of Promega,(
R4431 T6191 T6189 arg3Of ),(
R4432 T6192 T6193 arg1Of Measurements,represent
R4433 T6195 T6193 arg2Of results,represent
R4434 T6195 T6194 arg1Of results,the
R4435 T6195 T6196 arg1Of results,of
R4436 T6199 T6197 arg1Of three,at
R4437 T6199 T6198 arg1Of three,least
R4438 T6201 T6196 arg2Of experiments,of
R4439 T6201 T6199 arg1Of experiments,three
R4440 T6201 T6200 arg1Of experiments,independent
R4441 T6203 T6202 arg1Of activity,Promoter
R4442 T6203 T6204 arg1Of activity,is
R4443 T6203 T6205 arg2Of activity,expressed
R4444 T6205 T6204 arg2Of expressed,is
R4445 T6205 T6206 arg1Of expressed,as
R4446 T6205 T6223 arg1Of expressed,to
R4447 T6206 T6222 arg1Of as,or
R4448 T6208 T6206 arg2Of number,as
R4449 T6208 T6207 arg1Of number,the
R4450 T6208 T6209 arg1Of number,of
R4451 T6213 T6209 arg2Of units,of
R4452 T6213 T6210 arg1Of units,firefly
R4453 T6213 T6211 arg1Of units,luciferase
R4454 T6213 T6212 arg1Of units,light
R4455 T6213 T6214 arg2Of units,normalized
R4456 T6214 T6216 arg1Of normalized,to
R4457 T6216 T6215 arg1Of to,either
R4458 T6221 T6216 arg2Of units,to
R4459 T6221 T6217 arg1Of units,pRL-TK
R4460 T6221 T6218 arg1Of units,renilla
R4461 T6221 T6219 arg1Of units,luciferase
R4462 T6221 T6220 arg1Of units,light
R4463 T6223 T6222 arg2Of to,or
R4464 T6226 T6223 arg2Of concentration,to
R4465 T6226 T6224 arg1Of concentration,cellular
R4466 T6226 T6225 arg1Of concentration,protein
R4467 T6226 T6227 arg1Of concentration,(
R4468 T6228 T6227 arg2Of where,(
R4469 T6230 T6231 arg1Of C/EBP-β,or
R4470 T6231 T6229 arg2Of or,co-transfected
R4471 T6231 T6233 arg1Of or,affected
R4472 T6232 T6231 arg2Of LPS,or
R4473 T6233 T6228 arg1Of affected,where
R4474 T6235 T6233 arg2Of activity,affected
R4475 T6235 T6234 arg1Of activity,pRL-TK
R4476 T6236 T6227 arg3Of ),(
R4477 T6238 T6237 arg1Of concentration,Protein
R4478 T6238 T6239 arg1Of concentration,was
R4479 T6238 T6240 arg2Of concentration,determined
R4480 T6240 T6239 arg2Of determined,was
R4481 T6241 T6240 arg3Of using,determined
R4482 T6246 T6241 arg2Of reagent,using
R4483 T6246 T6242 arg1Of reagent,the
R4484 T6246 T6243 arg1Of reagent,Bio-Rad
R4485 T6246 T6244 arg1Of reagent,protein
R4486 T6246 T6245 arg1Of reagent,microassay
R5191 T7275 T7276 arg1Of Transfection,and
R5192 T7277 T7276 arg2Of Luciferase,and
R5193 T7278 T7274 arg1Of Assays,Transient
R5194 T7278 T7275 arg1Of Assays,Transfection
R5195 T7278 T7277 arg1Of Assays,Luciferase
R5196 T7278 T7279 arg1Of Assays,(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7233 27-37 Protein denotes Luciferase
T5987 222-224 Protein denotes TK
T5986 204-220 Protein denotes thymidine kinase
T5985 149-159 Protein denotes luciferase
T5984 27-37 Protein denotes Luciferase
T5994 1227-1229 Protein denotes TK
T5993 1199-1206 Protein denotes C/EBP-β
T5992 1117-1127 Protein denotes luciferase
T5991 1106-1108 Protein denotes TK
T5990 1058-1068 Protein denotes luciferase
T5989 876-886 Protein denotes Luciferase
T5988 830-840 Protein denotes Luciferase

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6265 1199-1206 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T6264 1117-1127 http://www.uniprot.org/uniprot/P08659 denotes luciferase
T6263 1058-1068 http://www.uniprot.org/uniprot/P08659 denotes luciferase
T6262 876-886 http://www.uniprot.org/uniprot/P08659 denotes Luciferase
T6261 830-840 http://www.uniprot.org/uniprot/P08659 denotes Luciferase
T6260 27-37 http://www.uniprot.org/uniprot/P08659 denotes Luciferase
T7490 27-37 http://www.uniprot.org/uniprot/P08659 denotes Luciferase

UBERON-AE

Id Subject Object Predicate Lexical cue
T5964 642-648 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue

GO-BP

Id Subject Object Predicate Lexical cue
T6000 1146-1154 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular
T5999 830-849 http://purl.obolibrary.org/obo/GO_0050397 denotes Luciferase activity
T5998 830-849 http://purl.obolibrary.org/obo/GO_0050248 denotes Luciferase activity
T5997 830-849 http://purl.obolibrary.org/obo/GO_0047712 denotes Luciferase activity
T5996 830-849 http://purl.obolibrary.org/obo/GO_0047077 denotes Luciferase activity
T5995 830-849 http://purl.obolibrary.org/obo/GO_0045289 denotes Luciferase activity

GO-MF

Id Subject Object Predicate Lexical cue
T6001 830-849 http://purl.obolibrary.org/obo/GO_0045289 denotes Luciferase activity
T6005 830-849 http://purl.obolibrary.org/obo/GO_0050397 denotes Luciferase activity
T6004 830-849 http://purl.obolibrary.org/obo/GO_0050248 denotes Luciferase activity
T6003 830-849 http://purl.obolibrary.org/obo/GO_0047712 denotes Luciferase activity
T6002 830-849 http://purl.obolibrary.org/obo/GO_0047077 denotes Luciferase activity

GO-CC

Id Subject Object Predicate Lexical cue
T6008 692-696 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T6007 580-585 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T6006 78-83 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T5971 1241-1323 Sentence denotes Protein concentration was determined using the Bio-Rad protein microassay reagent.
T5970 1002-1240 Sentence denotes Promoter activity is expressed as the number of firefly luciferase light units normalized either to pRL-TK renilla luciferase light units or to cellular protein concentration (where co-transfected C/EBP-β or LPS affected pRL-TK activity).
T5969 924-1001 Sentence denotes Measurements represent the results of at least three independent experiments.
T5968 830-923 Sentence denotes Luciferase activity was measured using a Dual-Luciferase Reporter Assay System kit (Promega).
T5967 568-829 Sentence denotes Transfected cells were transferred to 10 ml of pre-warmed media in 6-well tissue culture plates, divided into two identical cell pools and incubated 16 hrs in a 5% CO2 and 95% humidified air atmosphere at 37°C either in the presence or absence of 100 ng/ml LPS.
T5966 68-567 Sentence denotes RAW 264.7 cells (2×107) growing in log phase were transfected with the indicated luciferase reporter plasmid (20 µg) along with the pRL-thymidine kinase (TK) (Promega) internal control reporter plasmid (2 µg) by electroporation using a Bio-Rad Gene Pulser with a Capacitance Extender (0.25 kV, 960 µFd). pGL3 control plasmid which encodes the SV40 promoter and enhancer was included as a positive control for transfection efficiency, and as an internal standard for promoter and enhancer activities.
T5965 0-67 Sentence denotes Transient Transfection and Luciferase Assays (RAW264.7 Macrophages)
T69 0-67 Sentence denotes Transient Transfection and Luciferase Assays (RAW264.7 Macrophages)
T70 68-567 Sentence denotes RAW 264.7 cells (2×107) growing in log phase were transfected with the indicated luciferase reporter plasmid (20 µg) along with the pRL-thymidine kinase (TK) (Promega) internal control reporter plasmid (2 µg) by electroporation using a Bio-Rad Gene Pulser with a Capacitance Extender (0.25 kV, 960 µFd). pGL3 control plasmid which encodes the SV40 promoter and enhancer was included as a positive control for transfection efficiency, and as an internal standard for promoter and enhancer activities.
T71 568-829 Sentence denotes Transfected cells were transferred to 10 ml of pre-warmed media in 6-well tissue culture plates, divided into two identical cell pools and incubated 16 hrs in a 5% CO2 and 95% humidified air atmosphere at 37°C either in the presence or absence of 100 ng/ml LPS.
T72 830-923 Sentence denotes Luciferase activity was measured using a Dual-Luciferase Reporter Assay System kit (Promega).
T73 924-1001 Sentence denotes Measurements represent the results of at least three independent experiments.
T74 1002-1240 Sentence denotes Promoter activity is expressed as the number of firefly luciferase light units normalized either to pRL-TK renilla luciferase light units or to cellular protein concentration (where co-transfected C/EBP-β or LPS affected pRL-TK activity).
T75 1241-1323 Sentence denotes Protein concentration was determined using the Bio-Rad protein microassay reagent.

simple1

Id Subject Object Predicate Lexical cue
T7259 27-37 Protein denotes Luciferase
T6030 1227-1229 Protein denotes TK
T6029 1199-1206 Protein denotes C/EBP-β
T6028 1117-1127 Protein denotes luciferase
T6027 1106-1108 Protein denotes TK
T6026 1058-1068 Protein denotes luciferase
T6025 876-886 Protein denotes Luciferase
T6024 830-840 Protein denotes Luciferase
T6023 222-224 Protein denotes TK
T6022 204-220 Protein denotes thymidine kinase
T6021 149-159 Protein denotes luciferase
T6020 27-37 Protein denotes Luciferase

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7472 27-37 Protein denotes Luciferase
T6259 1214-1222 Regulation denotes affected
T6258 1184-1198 Gene_expression denotes co-transfected
T6257 1117-1127 Protein denotes luciferase
T6256 1106-1108 Protein denotes TK
T6255 1058-1068 Protein denotes luciferase
T6254 1227-1229 Protein denotes TK
T6253 1199-1206 Protein denotes C/EBP-β
T6252 876-886 Protein denotes Luciferase
T6251 830-840 Protein denotes Luciferase
T6250 222-224 Protein denotes TK
T6249 204-220 Protein denotes thymidine kinase
T6248 149-159 Protein denotes luciferase
T6247 27-37 Protein denotes Luciferase
R4487 T6253 T6258 themeOf C/EBP-β,co-transfected
R4488 T6253 T6259 causeOf C/EBP-β,affected
R4489 T6254 T6259 themeOf TK,affected

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7531 27-37 Protein denotes Luciferase
T6300 1184-1198 Gene_expression denotes co-transfected
T6299 1117-1127 Protein denotes luciferase
T6298 1106-1108 Protein denotes TK
T6297 1058-1068 Protein denotes luciferase
T6296 1227-1229 Protein denotes TK
T6295 1199-1206 Protein denotes C/EBP-β
T6294 876-886 Protein denotes Luciferase
T6293 830-840 Protein denotes Luciferase
T6292 222-224 Protein denotes TK
T6291 204-220 Protein denotes thymidine kinase
T6290 149-159 Protein denotes luciferase
T6289 27-37 Protein denotes Luciferase
R4493 T6295 T6300 themeOf C/EBP-β,co-transfected

DLUT931

Id Subject Object Predicate Lexical cue
T7498 27-37 Protein denotes Luciferase
T6277 1184-1198 Gene_expression denotes co-transfected
T6276 1117-1127 Protein denotes luciferase
T6275 1106-1108 Protein denotes TK
T6274 1058-1068 Protein denotes luciferase
T6273 1227-1229 Protein denotes TK
T6272 1199-1206 Protein denotes C/EBP-β
T6271 876-886 Protein denotes Luciferase
T6270 830-840 Protein denotes Luciferase
T6269 222-224 Protein denotes TK
T6268 204-220 Protein denotes thymidine kinase
T6267 149-159 Protein denotes luciferase
T6266 27-37 Protein denotes Luciferase
R4490 T6272 T6277 themeOf C/EBP-β,co-transfected
R4491 T6274 T6277 themeOf luciferase,co-transfected

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7595 27-37 Protein denotes Luciferase
T6350 534-542 Entity denotes promoter
T6349 46-66 Entity denotes RAW264.7 Macrophages
T6348 804-828 Entity denotes absence of 100 ng/ml LPS
T6347 1296-1322 Protein denotes protein microassay reagent
T6346 149-159 Protein denotes luciferase
T6345 200-213 Protein denotes pRL-thymidine
T6344 407-424 Entity denotes the SV40 promoter
T6343 27-37 Protein denotes Luciferase
T6342 678-702 Entity denotes two identical cell pools
T6341 1106-1108 Protein denotes TK
T6340 1296-1322 Entity denotes protein microassay reagent
T6339 1241-1262 Entity denotes Protein concentration
T6338 200-213 Entity denotes pRL-thymidine
T6337 1146-1162 Protein denotes cellular protein
T6336 1050-1068 Protein denotes firefly luciferase
T6335 302-316 Protein denotes a Bio-Rad Gene
T6355 1210-1213 Entity denotes LPS
T6354 1117-1127 Protein denotes luciferase
T6353 1102-1108 Protein denotes pRL-TK
T6352 204-213 Entity denotes thymidine
T6351 1223-1229 Protein denotes pRL-TK
T6367 1178-1238 Regulation denotes where co-transfected C/EBP-β or LPS affected pRL-TK activity
T6366 1178-1238 Regulation denotes where co-transfected C/EBP-β or LPS affected pRL-TK activity
T6365 1102-1108 Protein denotes pRL-TK
T6364 568-585 Entity denotes Transfected cells
T6363 222-224 Protein denotes TK
T6362 1184-1206 Protein denotes co-transfected C/EBP-β
T6361 196-225 Protein denotes the pRL-thymidine kinase (TK)
T6360 707-735 Protein denotes incubated 16 hrs in a 5% CO2
T6359 1223-1229 Protein denotes pRL-TK
T6358 1002-1010 Entity denotes Promoter
T6357 830-840 Protein denotes Luciferase
T6356 869-901 Protein denotes a Dual-Luciferase Reporter Assay
R4504 T6355 T6367 causeOf LPS,where co-transfected C/EBP-β or LPS affected pRL-TK activity
R4505 T6362 T6366 causeOf co-transfected C/EBP-β,where co-transfected C/EBP-β or LPS affected pRL-TK activity

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7549 27-37 Protein denotes Luciferase
T6317 1292-1295 Protein denotes Rad
T6316 1214-1222 Regulation denotes affected
T6315 1214-1222 Regulation denotes affected
T6314 1023-1032 Gene_expression denotes expressed
T6313 1227-1229 Protein denotes TK
T6312 1223-1226 Protein denotes pRL
T6311 1199-1206 Protein denotes C/EBP-β
T6310 1106-1139 Protein denotes TK renilla luciferase light units
T6309 1102-1105 Protein denotes pRL
T6308 1058-1068 Protein denotes luciferase
T6307 876-886 Protein denotes Luciferase
T6306 830-840 Protein denotes Luciferase
T6305 411-424 Protein denotes SV40 promoter
T6304 222-224 Protein denotes TK
T6303 200-220 Protein denotes pRL-thymidine kinase
T6302 149-159 Protein denotes luciferase
T6301 27-37 Protein denotes Luciferase
R4494 T6308 T6314 themeOf luciferase,expressed
R4495 T6311 T6315 causeOf C/EBP-β,affected
R4496 T6311 T6316 causeOf C/EBP-β,affected
R4497 T6312 T6315 themeOf pRL,affected
R4498 T6313 T6316 themeOf TK,affected

testone

Id Subject Object Predicate Lexical cue
T7161 27-37 Protein denotes Luciferase
T5939 1214-1222 Regulation denotes affected
T5938 1184-1198 Gene_expression denotes co-transfected
T5937 1023-1032 Gene_expression denotes expressed
T5936 1227-1229 Protein denotes TK
T5935 1199-1206 Protein denotes C/EBP-β
T5934 1117-1127 Protein denotes luciferase
T5933 1106-1108 Protein denotes TK
T5932 1058-1068 Protein denotes luciferase
T5931 876-886 Protein denotes Luciferase
T5930 830-840 Protein denotes Luciferase
T5929 222-224 Protein denotes TK
T5928 204-220 Protein denotes thymidine kinase
T5927 149-159 Protein denotes luciferase
T5926 27-37 Protein denotes Luciferase
R4256 T5929 T5928 equivalentTo TK,thymidine kinase
R4257 T5932 T5938 themeOf luciferase,co-transfected
R4258 T5932 T5937 themeOf luciferase,expressed
R4259 T5934 T5938 themeOf luciferase,co-transfected
R4260 T5934 T5937 themeOf luciferase,expressed
R4261 T5935 T5938 themeOf C/EBP-β,co-transfected
R4262 T5938 T5939 themeOf co-transfected,affected

test3

Id Subject Object Predicate Lexical cue
T7193 27-37 Protein denotes Luciferase
T7178 27-37 Protein denotes Luciferase
T5963 1227-1229 Protein denotes TK
T5962 1199-1206 Protein denotes C/EBP-β
T5961 1187-1198 Gene_expression denotes transfected
T5960 1117-1127 Protein denotes luciferase
T5959 1106-1108 Protein denotes TK
T5958 1058-1068 Protein denotes luciferase
T5957 1023-1032 Gene_expression denotes expressed
T5956 876-886 Protein denotes Luciferase
T5955 830-840 Protein denotes Luciferase
T5954 222-224 Protein denotes TK
T5953 204-220 Protein denotes thymidine kinase
T5952 149-159 Protein denotes luciferase
T5951 27-37 Protein denotes Luciferase
T5950 1227-1229 Protein denotes TK
T5949 1199-1206 Protein denotes C/EBP-β
T5948 1117-1127 Protein denotes luciferase
T5947 1106-1108 Protein denotes TK
T5946 1058-1068 Protein denotes luciferase
T5945 876-886 Protein denotes Luciferase
T5944 830-840 Protein denotes Luciferase
T5943 222-224 Protein denotes TK
T5942 204-220 Protein denotes thymidine kinase
T5941 149-159 Protein denotes luciferase
T5940 27-37 Protein denotes Luciferase
R4263 T5954 T5953 equivalentTo TK,thymidine kinase
R4264 T5958 T5957 themeOf luciferase,expressed
R4265 T5960 T5957 themeOf luciferase,expressed
R4266 T5962 T5961 themeOf C/EBP-β,transfected