PMC:3589482 / 11006-11212 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T5885","span":{"begin":205,"end":206},"obj":"."},{"id":"T5884","span":{"begin":197,"end":205},"obj":"NN"},{"id":"T5883","span":{"begin":188,"end":196},"obj":"NNP"},{"id":"T5882","span":{"begin":181,"end":187},"obj":"NN"},{"id":"T5881","span":{"begin":171,"end":180},"obj":"JJ"},{"id":"T5880","span":{"begin":167,"end":170},"obj":"DT"},{"id":"T5879","span":{"begin":164,"end":166},"obj":"IN"},{"id":"T5878","span":{"begin":157,"end":163},"obj":"NN"},{"id":"T5877","span":{"begin":153,"end":156},"obj":"CD"},{"id":"T5876","span":{"begin":152,"end":153},"obj":"NN"},{"id":"T5875","span":{"begin":149,"end":152},"obj":"CD"},{"id":"T5874","span":{"begin":148,"end":149},"obj":"NN"},{"id":"T5873","span":{"begin":144,"end":147},"obj":"DT"},{"id":"T5872","span":{"begin":141,"end":143},"obj":"IN"},{"id":"T5871","span":{"begin":135,"end":140},"obj":"NN"},{"id":"T5870","span":{"begin":132,"end":134},"obj":"IN"},{"id":"T5869","span":{"begin":122,"end":131},"obj":"NN"},{"id":"T5868","span":{"begin":119,"end":121},"obj":"IN"},{"id":"T5867","span":{"begin":113,"end":118},"obj":"NNS"},{"id":"T5866","span":{"begin":101,"end":112},"obj":"NN"},{"id":"T5865","span":{"begin":99,"end":100},"obj":"PRP"},{"id":"T5864","span":{"begin":95,"end":98},"obj":"NNP"},{"id":"T5863","span":{"begin":91,"end":94},"obj":"CC"},{"id":"T5862","span":{"begin":89,"end":90},"obj":"PRP"},{"id":"T5861","span":{"begin":84,"end":88},"obj":"NNP"},{"id":"T5860","span":{"begin":80,"end":83},"obj":"DT"},{"id":"T5859","span":{"begin":72,"end":79},"obj":"IN"},{"id":"T5858","span":{"begin":65,"end":71},"obj":"VBN"},{"id":"T5857","span":{"begin":61,"end":64},"obj":"CC"},{"id":"T5856","span":{"begin":59,"end":60},"obj":"PRP"},{"id":"T5855","span":{"begin":55,"end":58},"obj":"NNP"},{"id":"T5854","span":{"begin":51,"end":54},"obj":"CC"},{"id":"T5853","span":{"begin":49,"end":50},"obj":"PRP"},{"id":"T5852","span":{"begin":44,"end":48},"obj":"NNP"},{"id":"T5851","span":{"begin":39,"end":43},"obj":"IN"},{"id":"T5850","span":{"begin":30,"end":38},"obj":"VBN"},{"id":"T5849","span":{"begin":25,"end":29},"obj":"VBD"},{"id":"T5848","span":{"begin":16,"end":24},"obj":"NNS"},{"id":"T5847","span":{"begin":12,"end":15},"obj":"NN"},{"id":"T5846","span":{"begin":0,"end":11},"obj":"JJ"}],"relations":[{"id":"R4207","pred":"amod","subj":"T5846","obj":"T5848"},{"id":"R4208","pred":"compound","subj":"T5847","obj":"T5848"},{"id":"R4209","pred":"nsubjpass","subj":"T5848","obj":"T5850"},{"id":"R4210","pred":"auxpass","subj":"T5849","obj":"T5850"},{"id":"R4211","pred":"ROOT","subj":"T5850","obj":"T5850"},{"id":"R4212","pred":"prep","subj":"T5851","obj":"T5850"},{"id":"R4213","pred":"pobj","subj":"T5852","obj":"T5851"},{"id":"R4214","pred":"advcl","subj":"T5853","obj":"T5850"},{"id":"R4215","pred":"cc","subj":"T5854","obj":"T5853"},{"id":"R4216","pred":"conj","subj":"T5855","obj":"T5853"},{"id":"R4217","pred":"conj","subj":"T5856","obj":"T5853"},{"id":"R4218","pred":"cc","subj":"T5857","obj":"T5856"},{"id":"R4219","pred":"conj","subj":"T5858","obj":"T5856"},{"id":"R4220","pred":"prep","subj":"T5859","obj":"T5858"},{"id":"R4221","pred":"det","subj":"T5860","obj":"T5861"},{"id":"R4222","pred":"pobj","subj":"T5861","obj":"T5859"},{"id":"R4223","pred":"nummod","subj":"T5862","obj":"T5861"},{"id":"R4224","pred":"cc","subj":"T5863","obj":"T5862"},{"id":"R4225","pred":"conj","subj":"T5864","obj":"T5862"},{"id":"R4226","pred":"nsubj","subj":"T5865","obj":"T5866"},{"id":"R4227","pred":"conj","subj":"T5866","obj":"T5862"},{"id":"R4228","pred":"dobj","subj":"T5867","obj":"T5866"},{"id":"R4229","pred":"prep","subj":"T5868","obj":"T5867"},{"id":"R4230","pred":"pobj","subj":"T5869","obj":"T5868"},{"id":"R4231","pred":"prep","subj":"T5870","obj":"T5866"},{"id":"R4232","pred":"pobj","subj":"T5871","obj":"T5870"},{"id":"R4233","pred":"prep","subj":"T5872","obj":"T5871"},{"id":"R4234","pred":"det","subj":"T5873","obj":"T5878"},{"id":"R4235","pred":"nmod","subj":"T5874","obj":"T5878"},{"id":"R4236","pred":"nummod","subj":"T5875","obj":"T5874"},{"id":"R4237","pred":"amod","subj":"T5876","obj":"T5878"},{"id":"R4238","pred":"nummod","subj":"T5877","obj":"T5878"},{"id":"R4239","pred":"pobj","subj":"T5878","obj":"T5872"},{"id":"R4240","pred":"prep","subj":"T5879","obj":"T5878"},{"id":"R4241","pred":"det","subj":"T5880","obj":"T5884"},{"id":"R4242","pred":"amod","subj":"T5881","obj":"T5884"},{"id":"R4243","pred":"compound","subj":"T5882","obj":"T5883"},{"id":"R4244","pred":"compound","subj":"T5883","obj":"T5884"},{"id":"R4245","pred":"pobj","subj":"T5884","obj":"T5879"},{"id":"R4246","pred":"punct","subj":"T5885","obj":"T5866"}],"text":"Recombinant PCR products were digested with EcoR I and Xho I and cloned between the EcoR I and Xho I restriction sites of pGLmP-539 in place of the −539/+92 region of the wild-type murine SerpinB2 promoter."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T5189","span":{"begin":197,"end":205},"obj":"NN"},{"id":"T5188","span":{"begin":188,"end":196},"obj":"NN"},{"id":"T5187","span":{"begin":181,"end":187},"obj":"JJ"},{"id":"T5186","span":{"begin":171,"end":180},"obj":"JJ"},{"id":"T5185","span":{"begin":167,"end":170},"obj":"DT"},{"id":"T5184","span":{"begin":164,"end":166},"obj":"IN"},{"id":"T5183","span":{"begin":157,"end":163},"obj":"NN"},{"id":"T5182","span":{"begin":148,"end":156},"obj":"NN"},{"id":"T5181","span":{"begin":144,"end":147},"obj":"DT"},{"id":"T5180","span":{"begin":141,"end":143},"obj":"IN"},{"id":"T5179","span":{"begin":135,"end":140},"obj":"NN"},{"id":"T5178","span":{"begin":132,"end":134},"obj":"IN"},{"id":"T5177","span":{"begin":122,"end":131},"obj":"NN"},{"id":"T5176","span":{"begin":119,"end":121},"obj":"IN"},{"id":"T5175","span":{"begin":113,"end":118},"obj":"NN"},{"id":"T5174","span":{"begin":101,"end":112},"obj":"NN"},{"id":"T5173","span":{"begin":99,"end":100},"obj":"CD"},{"id":"T5172","span":{"begin":95,"end":98},"obj":"NN"},{"id":"T5171","span":{"begin":91,"end":94},"obj":"CC"},{"id":"T5170","span":{"begin":89,"end":90},"obj":"CD"},{"id":"T5169","span":{"begin":84,"end":88},"obj":"NN"},{"id":"T5168","span":{"begin":80,"end":83},"obj":"DT"},{"id":"T5167","span":{"begin":72,"end":79},"obj":"IN"},{"id":"T5166","span":{"begin":65,"end":71},"obj":"VB"},{"id":"T5165","span":{"begin":61,"end":64},"obj":"CC"},{"id":"T5164","span":{"begin":59,"end":60},"obj":"NNP"},{"id":"T5163","span":{"begin":55,"end":58},"obj":"NNP"},{"id":"T5162","span":{"begin":51,"end":54},"obj":"CC"},{"id":"T5161","span":{"begin":49,"end":50},"obj":"CD"},{"id":"T5160","span":{"begin":44,"end":48},"obj":"NN"},{"id":"T5159","span":{"begin":39,"end":43},"obj":"IN"},{"id":"T5158","span":{"begin":30,"end":38},"obj":"VB"},{"id":"T5157","span":{"begin":25,"end":29},"obj":"VB"},{"id":"T5156","span":{"begin":16,"end":24},"obj":"NN"},{"id":"T5155","span":{"begin":12,"end":15},"obj":"NN"},{"id":"T5154","span":{"begin":0,"end":11},"obj":"JJ"}],"relations":[{"id":"R3789","pred":"arg1Of","subj":"T5156","obj":"T5154"},{"id":"R3790","pred":"arg1Of","subj":"T5156","obj":"T5155"},{"id":"R3791","pred":"arg1Of","subj":"T5156","obj":"T5157"},{"id":"R3792","pred":"arg2Of","subj":"T5156","obj":"T5158"},{"id":"R3793","pred":"arg2Of","subj":"T5156","obj":"T5166"},{"id":"R3794","pred":"arg1Of","subj":"T5158","obj":"T5159"},{"id":"R3795","pred":"arg1Of","subj":"T5158","obj":"T5165"},{"id":"R3796","pred":"arg1Of","subj":"T5160","obj":"T5161"},{"id":"R3797","pred":"arg1Of","subj":"T5160","obj":"T5162"},{"id":"R3798","pred":"arg2Of","subj":"T5162","obj":"T5159"},{"id":"R3799","pred":"arg2Of","subj":"T5164","obj":"T5162"},{"id":"R3800","pred":"arg1Of","subj":"T5164","obj":"T5163"},{"id":"R3801","pred":"arg2Of","subj":"T5165","obj":"T5157"},{"id":"R3802","pred":"arg2Of","subj":"T5166","obj":"T5165"},{"id":"R3803","pred":"arg1Of","subj":"T5166","obj":"T5167"},{"id":"R3804","pred":"arg1Of","subj":"T5166","obj":"T5178"},{"id":"R3805","pred":"arg1Of","subj":"T5170","obj":"T5171"},{"id":"R3806","pred":"arg2Of","subj":"T5172","obj":"T5171"},{"id":"R3807","pred":"arg2Of","subj":"T5175","obj":"T5167"},{"id":"R3808","pred":"arg1Of","subj":"T5175","obj":"T5168"},{"id":"R3809","pred":"arg1Of","subj":"T5175","obj":"T5169"},{"id":"R3810","pred":"arg1Of","subj":"T5175","obj":"T5170"},{"id":"R3811","pred":"arg1Of","subj":"T5175","obj":"T5172"},{"id":"R3812","pred":"arg1Of","subj":"T5175","obj":"T5173"},{"id":"R3813","pred":"arg1Of","subj":"T5175","obj":"T5174"},{"id":"R3814","pred":"arg1Of","subj":"T5175","obj":"T5176"},{"id":"R3815","pred":"arg2Of","subj":"T5177","obj":"T5176"},{"id":"R3816","pred":"arg2Of","subj":"T5179","obj":"T5178"},{"id":"R3817","pred":"arg1Of","subj":"T5179","obj":"T5180"},{"id":"R3818","pred":"arg2Of","subj":"T5183","obj":"T5180"},{"id":"R3819","pred":"arg1Of","subj":"T5183","obj":"T5181"},{"id":"R3820","pred":"arg1Of","subj":"T5183","obj":"T5182"},{"id":"R3821","pred":"arg1Of","subj":"T5183","obj":"T5184"},{"id":"R3822","pred":"arg2Of","subj":"T5189","obj":"T5184"},{"id":"R3823","pred":"arg1Of","subj":"T5189","obj":"T5185"},{"id":"R3824","pred":"arg1Of","subj":"T5189","obj":"T5186"},{"id":"R3825","pred":"arg1Of","subj":"T5189","obj":"T5187"},{"id":"R3826","pred":"arg1Of","subj":"T5189","obj":"T5188"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Recombinant PCR products were digested with EcoR I and Xho I and cloned between the EcoR I and Xho I restriction sites of pGLmP-539 in place of the −539/+92 region of the wild-type murine SerpinB2 promoter."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T4800","span":{"begin":188,"end":196},"obj":"Protein"},{"id":"T4799","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T4798","span":{"begin":44,"end":50},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Recombinant PCR products were digested with EcoR I and Xho I and cloned between the EcoR I and Xho I restriction sites of pGLmP-539 in place of the −539/+92 region of the wild-type murine SerpinB2 promoter."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T5244","span":{"begin":188,"end":196},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Recombinant PCR products were digested with EcoR I and Xho I and cloned between the EcoR I and Xho I restriction sites of pGLmP-539 in place of the −539/+92 region of the wild-type murine SerpinB2 promoter."}

    sentences

    {"project":"sentences","denotations":[{"id":"T4751","span":{"begin":0,"end":206},"obj":"Sentence"},{"id":"T67","span":{"begin":0,"end":206},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Recombinant PCR products were digested with EcoR I and Xho I and cloned between the EcoR I and Xho I restriction sites of pGLmP-539 in place of the −539/+92 region of the wild-type murine SerpinB2 promoter."}

    simple1

    {"project":"simple1","denotations":[{"id":"T4820","span":{"begin":188,"end":196},"obj":"Protein"},{"id":"T4819","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T4818","span":{"begin":44,"end":50},"obj":"Protein"}],"text":"Recombinant PCR products were digested with EcoR I and Xho I and cloned between the EcoR I and Xho I restriction sites of pGLmP-539 in place of the −539/+92 region of the wild-type murine SerpinB2 promoter."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T5237","span":{"begin":188,"end":196},"obj":"Protein"},{"id":"T5236","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T5235","span":{"begin":44,"end":50},"obj":"Protein"}],"text":"Recombinant PCR products were digested with EcoR I and Xho I and cloned between the EcoR I and Xho I restriction sites of pGLmP-539 in place of the −539/+92 region of the wild-type murine SerpinB2 promoter."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T5308","span":{"begin":188,"end":196},"obj":"Protein"},{"id":"T5307","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T5306","span":{"begin":44,"end":50},"obj":"Protein"}],"text":"Recombinant PCR products were digested with EcoR I and Xho I and cloned between the EcoR I and Xho I restriction sites of pGLmP-539 in place of the −539/+92 region of the wild-type murine SerpinB2 promoter."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T5267","span":{"begin":188,"end":196},"obj":"Protein"},{"id":"T5266","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T5265","span":{"begin":44,"end":50},"obj":"Protein"}],"text":"Recombinant PCR products were digested with EcoR I and Xho I and cloned between the EcoR I and Xho I restriction sites of pGLmP-539 in place of the −539/+92 region of the wild-type murine SerpinB2 promoter."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T5473","span":{"begin":80,"end":90},"obj":"Protein"},{"id":"T5460","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T5448","span":{"begin":188,"end":196},"obj":"Protein"},{"id":"T5447","span":{"begin":164,"end":205},"obj":"Entity"},{"id":"T5418","span":{"begin":12,"end":15},"obj":"Protein"},{"id":"T5406","span":{"begin":123,"end":127},"obj":"Protein"},{"id":"T5404","span":{"begin":95,"end":100},"obj":"Protein"},{"id":"T5402","span":{"begin":0,"end":24},"obj":"Entity"},{"id":"T5394","span":{"begin":122,"end":131},"obj":"Entity"},{"id":"T5391","span":{"begin":44,"end":50},"obj":"Protein"}],"relations":[{"id":"R3842","pred":"partOf","subj":"T5447","obj":"T5448"}],"text":"Recombinant PCR products were digested with EcoR I and Xho I and cloned between the EcoR I and Xho I restriction sites of pGLmP-539 in place of the −539/+92 region of the wild-type murine SerpinB2 promoter."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T5348","span":{"begin":188,"end":205},"obj":"Protein"},{"id":"T5347","span":{"begin":95,"end":100},"obj":"Protein"},{"id":"T5346","span":{"begin":84,"end":90},"obj":"Protein"},{"id":"T5345","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T5344","span":{"begin":44,"end":50},"obj":"Protein"},{"id":"T5343","span":{"begin":0,"end":24},"obj":"Protein"}],"text":"Recombinant PCR products were digested with EcoR I and Xho I and cloned between the EcoR I and Xho I restriction sites of pGLmP-539 in place of the −539/+92 region of the wild-type murine SerpinB2 promoter."}

    testone

    {"project":"testone","denotations":[{"id":"T4695","span":{"begin":188,"end":196},"obj":"Protein"},{"id":"T4694","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T4693","span":{"begin":44,"end":50},"obj":"Protein"}],"text":"Recombinant PCR products were digested with EcoR I and Xho I and cloned between the EcoR I and Xho I restriction sites of pGLmP-539 in place of the −539/+92 region of the wild-type murine SerpinB2 promoter."}

    test3

    {"project":"test3","denotations":[{"id":"T4740","span":{"begin":188,"end":196},"obj":"Protein"},{"id":"T4739","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T4738","span":{"begin":44,"end":50},"obj":"Protein"},{"id":"T4718","span":{"begin":188,"end":196},"obj":"Protein"},{"id":"T4717","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T4716","span":{"begin":44,"end":50},"obj":"Protein"}],"text":"Recombinant PCR products were digested with EcoR I and Xho I and cloned between the EcoR I and Xho I restriction sites of pGLmP-539 in place of the −539/+92 region of the wild-type murine SerpinB2 promoter."}