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PMC:3589482 / 1059-1306 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T972 246-247 . denotes .
T971 230-246 NN denotes LPS-inducibility
T970 222-229 JJ denotes optimal
T969 218-221 IN denotes for
T968 208-217 JJ denotes essential
T967 204-207 VBP denotes are
T966 195-203 NN denotes promoter
T965 186-194 JJ denotes proximal
T964 177-185 NNP denotes SerpinB2
T963 170-176 NN denotes murine
T962 166-169 DT denotes the
T961 163-165 IN denotes in
T960 154-162 NNS denotes elements
T959 145-153 NN denotes response
T958 143-144 -RRB- denotes )
T957 139-143 NN denotes AP-1
T956 138-139 -LRB- denotes (
T955 136-137 CD denotes 1
T954 128-135 NN denotes protein
T953 118-127 NN denotes activator
T952 114-117 CD denotes two
T951 110-113 CC denotes and
T950 108-109 -RRB- denotes )
T949 105-108 NNP denotes CRE
T948 104-105 -LRB- denotes (
T947 96-103 NN denotes element
T946 87-95 NN denotes response
T945 83-86 NNP denotes AMP
T944 76-82 JJ denotes cyclic
T943 74-75 DT denotes a
T942 72-73 , denotes ,
T941 65-72 NN denotes element
T940 63-64 -RRB- denotes )
T939 58-63 NNP denotes C/EBP
T938 57-58 -LRB- denotes (
T937 49-56 JJ denotes binding
T936 40-48 NN denotes enhancer
T935 34-39 NNP denotes CCAAT
T934 32-33 DT denotes a
T933 27-31 IN denotes that
T932 18-26 VBD denotes revealed
T931 9-17 NNS denotes analyses
T930 0-8 NN denotes Mutation
R517 T930 T931 compound Mutation,analyses
R518 T931 T932 nsubj analyses,revealed
R519 T932 T932 ROOT revealed,revealed
R520 T933 T967 mark that,are
R521 T934 T936 det a,enhancer
R522 T935 T936 compound CCAAT,enhancer
R523 T936 T937 compound enhancer,binding
R524 T937 T967 nsubj binding,are
R525 T938 T941 punct (,element
R526 T939 T941 nmod C/EBP,element
R527 T940 T941 punct ),element
R528 T941 T937 appos element,binding
R529 T942 T941 punct ",",element
R530 T943 T947 det a,element
R531 T944 T947 amod cyclic,element
R532 T945 T947 compound AMP,element
R533 T946 T947 compound response,element
R534 T947 T937 appos element,binding
R535 T948 T949 punct (,CRE
R536 T949 T947 appos CRE,element
R537 T950 T949 punct ),CRE
R538 T951 T947 cc and,element
R539 T952 T954 nummod two,protein
R540 T953 T954 compound activator,protein
R541 T954 T937 appos protein,binding
R542 T955 T957 nummod 1,AP-1
R543 T956 T957 punct (,AP-1
R544 T957 T954 appos AP-1,protein
R545 T958 T957 punct ),AP-1
R546 T959 T960 compound response,elements
R547 T960 T967 nsubj elements,are
R548 T961 T960 prep in,elements
R549 T962 T966 det the,promoter
R550 T963 T966 nmod murine,promoter
R551 T964 T966 nmod SerpinB2,promoter
R552 T965 T966 amod proximal,promoter
R553 T966 T961 pobj promoter,in
R554 T967 T932 ccomp are,revealed
R555 T968 T967 acomp essential,are
R556 T969 T968 prep for,essential
R557 T970 T971 amod optimal,LPS-inducibility
R558 T971 T969 pobj LPS-inducibility,for
R559 T972 T932 punct .,revealed

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T425 230-246 NN denotes LPS-inducibility
T424 222-229 JJ denotes optimal
T423 218-221 IN denotes for
T422 208-217 JJ denotes essential
T421 204-207 VB denotes are
T420 195-203 NN denotes promoter
T419 186-194 JJ denotes proximal
T418 177-185 NN denotes SerpinB2
T417 170-176 JJ denotes murine
T416 166-169 DT denotes the
T415 163-165 IN denotes in
T414 154-162 NN denotes elements
T413 145-153 NN denotes response
T412 143-144 -RRB- denotes )
T411 139-143 NN denotes AP-1
T410 138-139 -LRB- denotes (
T409 136-137 CD denotes 1
T408 128-135 NN denotes protein
T407 118-127 NN denotes activator
T406 114-117 CD denotes two
T405 110-113 CC denotes and
T404 108-109 -RRB- denotes )
T403 105-108 NN denotes CRE
T402 104-105 -LRB- denotes (
T401 96-103 NN denotes element
T400 87-95 NN denotes response
T399 83-86 NN denotes AMP
T398 76-82 JJ denotes cyclic
T397 74-75 DT denotes a
T396 72-73 -COMMA- denotes ,
T395 65-72 NN denotes element
T394 63-64 -RRB- denotes )
T393 58-63 NN denotes C/EBP
T392 57-58 -LRB- denotes (
T391 49-56 NN denotes binding
T390 40-48 NN denotes enhancer
T389 34-39 NN denotes CCAAT
T388 32-33 DT denotes a
T387 27-31 IN denotes that
T386 18-26 VB denotes revealed
T385 9-17 NN denotes analyses
T384 0-8 NN denotes Mutation
R195 T385 T384 arg1Of analyses,Mutation
R196 T385 T386 arg1Of analyses,revealed
R197 T393 T392 arg2Of C/EBP,(
R198 T394 T392 arg3Of ),(
R199 T395 T388 arg1Of element,a
R200 T395 T389 arg1Of element,CCAAT
R201 T395 T390 arg1Of element,enhancer
R202 T395 T391 arg1Of element,binding
R203 T395 T392 arg1Of element,(
R204 T395 T396 arg1Of element,","
R205 T395 T405 arg1Of element,and
R206 T401 T396 arg2Of element,","
R207 T401 T397 arg1Of element,a
R208 T401 T398 arg1Of element,cyclic
R209 T401 T399 arg1Of element,AMP
R210 T401 T400 arg1Of element,response
R211 T401 T402 arg1Of element,(
R212 T403 T402 arg2Of CRE,(
R213 T404 T402 arg3Of ),(
R214 T405 T421 arg1Of and,are
R215 T405 T422 arg1Of and,essential
R216 T407 T406 arg1Of activator,two
R217 T408 T409 arg1Of protein,1
R218 T411 T410 arg2Of AP-1,(
R219 T412 T410 arg3Of ),(
R220 T414 T405 arg2Of elements,and
R221 T414 T407 arg1Of elements,activator
R222 T414 T408 arg1Of elements,protein
R223 T414 T410 arg1Of elements,(
R224 T414 T413 arg1Of elements,response
R225 T414 T415 arg1Of elements,in
R226 T420 T415 arg2Of promoter,in
R227 T420 T416 arg1Of promoter,the
R228 T420 T417 arg1Of promoter,murine
R229 T420 T418 arg1Of promoter,SerpinB2
R230 T420 T419 arg1Of promoter,proximal
R231 T421 T386 arg2Of are,revealed
R232 T421 T387 arg1Of are,that
R233 T422 T421 arg2Of essential,are
R234 T422 T423 arg1Of essential,for
R235 T425 T423 arg2Of LPS-inducibility,for
R236 T425 T424 arg1Of LPS-inducibility,optimal

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T168 177-185 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T541 118-137 http://www.uniprot.org/uniprot/P10145 denotes activator protein 1
T540 136-141 http://www.uniprot.org/uniprot/P05412 denotes 1 (AP
T534 177-185 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T185 76-95 http://purl.obolibrary.org/obo/GO_0051591 denotes cyclic AMP response
T184 76-95 http://purl.obolibrary.org/obo/GO_0071320 denotes cyclic AMP response

GO-MF

Id Subject Object Predicate Lexical cue
T188 40-56 http://purl.obolibrary.org/obo/GO_0035326 denotes enhancer binding
T189 49-56 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T104 0-247 Sentence denotes Mutation analyses revealed that a CCAAT enhancer binding (C/EBP) element, a cyclic AMP response element (CRE) and two activator protein 1 (AP-1) response elements in the murine SerpinB2 proximal promoter are essential for optimal LPS-inducibility.
T8 0-247 Sentence denotes Mutation analyses revealed that a CCAAT enhancer binding (C/EBP) element, a cyclic AMP response element (CRE) and two activator protein 1 (AP-1) response elements in the murine SerpinB2 proximal promoter are essential for optimal LPS-inducibility.

simple1

Id Subject Object Predicate Lexical cue
T221 177-185 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T502 177-185 Protein denotes SerpinB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T612 177-185 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T578 177-185 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T707 83-86 Entity denotes AMP
T713 166-203 Entity denotes the murine SerpinB2 proximal promoter
T716 105-108 Protein denotes CRE
T725 58-63 Protein denotes C/EBP
T728 177-185 Protein denotes SerpinB2
T730 218-246 Entity denotes for optimal LPS-inducibility
T732 114-127 Entity denotes two activator
T742 128-144 Protein denotes protein 1 (AP-1)
T747 139-143 Protein denotes AP-1

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T653 170-203 Protein denotes murine SerpinB2 proximal promoter
T652 139-143 Protein denotes AP-1
T651 118-137 Protein denotes activator protein 1

testone

Id Subject Object Predicate Lexical cue
T31 177-185 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T82 177-185 Protein denotes SerpinB2
T60 177-185 Protein denotes SerpinB2