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PMC:3589482 / 10200-11271 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5894 1070-1071 . denotes .
T5893 1059-1070 NNS denotes experiments
T5892 1055-1058 DT denotes the
T5891 1052-1054 IN denotes in
T5890 1047-1051 VBN denotes used
T5889 1042-1046 VBD denotes were
T5888 1031-1041 NNS denotes constructs
T5887 1022-1030 VBD denotes verified
T5886 1013-1021 NN denotes Sequence
T5885 1011-1012 . denotes .
T5884 1003-1011 NN denotes promoter
T5883 994-1002 NNP denotes SerpinB2
T5882 987-993 NN denotes murine
T5881 977-986 JJ denotes wild-type
T5880 973-976 DT denotes the
T5879 970-972 IN denotes of
T5878 963-969 NN denotes region
T5877 959-962 CD denotes +92
T5876 958-959 NN denotes /
T5875 955-958 CD denotes 539
T5874 954-955 NN denotes −
T5873 950-953 DT denotes the
T5872 947-949 IN denotes of
T5871 941-946 NN denotes place
T5870 938-940 IN denotes in
T5869 928-937 NN denotes pGLmP-539
T5868 925-927 IN denotes of
T5867 919-924 NNS denotes sites
T5866 907-918 NN denotes restriction
T5865 905-906 PRP denotes I
T5864 901-904 NNP denotes Xho
T5863 897-900 CC denotes and
T5862 895-896 PRP denotes I
T5861 890-894 NNP denotes EcoR
T5860 886-889 DT denotes the
T5859 878-885 IN denotes between
T5858 871-877 VBN denotes cloned
T5857 867-870 CC denotes and
T5856 865-866 PRP denotes I
T5855 861-864 NNP denotes Xho
T5854 857-860 CC denotes and
T5853 855-856 PRP denotes I
T5852 850-854 NNP denotes EcoR
T5851 845-849 IN denotes with
T5850 836-844 VBN denotes digested
T5849 831-835 VBD denotes were
T5848 822-830 NNS denotes products
T5847 818-821 NN denotes PCR
T5846 806-817 JJ denotes Recombinant
T5845 804-805 . denotes .
T5844 800-804 NN denotes case
T5843 795-799 DT denotes each
T5842 792-794 IN denotes in
T5841 783-791 NN denotes template
T5840 779-782 DT denotes the
T5839 776-778 IN denotes as
T5838 771-775 VBN denotes used
T5837 767-770 VBD denotes was
T5836 757-766 NN denotes pGLmP-539
T5835 755-756 . denotes .
T5834 754-755 -RRB- denotes )
T5833 747-754 NNP denotes Promega
T5832 746-747 -LRB- denotes (
T5831 736-745 NNP denotes GLprimer2
T5830 732-735 CC denotes and
T5829 730-731 -RRB- denotes )
T5828 723-730 NNP denotes Promega
T5827 722-723 -LRB- denotes (
T5826 712-721 JJ denotes RVprimer3
T5825 707-711 VBD denotes were
T5824 699-706 NNS denotes primers
T5823 695-698 NNP denotes PCR
T5822 679-694 NN denotes oligonucleotide
T5821 670-678 NN denotes flanking
T5820 666-669 DT denotes The
T5819 664-665 . denotes .
T5818 663-664 NNP denotes ]
T5817 661-663 CD denotes 37
T5816 660-661 NNP denotes [
T5815 649-659 RB denotes previously
T5814 640-648 VBN denotes reported
T5813 635-639 VBD denotes were
T5812 619-634 NN denotes pGLmP-539mAP-1b
T5811 615-618 CC denotes and
T5810 613-614 , denotes ,
T5809 598-613 NN denotes pGLmP-539mAP-1a
T5808 596-597 , denotes ,
T5807 583-596 NN denotes pGLmP-539mCRE
T5806 581-582 , denotes ,
T5805 574-581 NNS denotes mutants
T5804 565-573 VB denotes generate
T5803 562-564 TO denotes to
T5802 557-561 VBD denotes used
T5801 549-556 NNS denotes primers
T5800 545-548 NNP denotes PCR
T5799 529-544 NN denotes oligonucleotide
T5798 525-528 DT denotes The
T5797 523-524 . denotes .
T5796 512-523 NNS denotes mPAI2mCEBPb
T5795 508-511 CC denotes and
T5794 496-507 NNS denotes mPAI2mCEBPa
T5793 494-495 : denotes :
T5792 491-494 NNP denotes EBP
T5791 490-491 NNP denotes /
T5790 479-490 NNP denotes pGLmP-539mC
T5789 477-478 : denotes ;
T5788 465-477 NN denotes mPAI2mOct-2b
T5787 461-464 CC denotes and
T5786 448-460 NN denotes mPAI2mOct-2a
T5707 0-10 NNP denotes Luciferase
T5785 446-447 : denotes :
T5784 433-446 NN denotes pGLmP-539mOct
T5783 431-432 : denotes ;
T5782 430-431 NN denotes b
T5781 428-430 CD denotes .1
T5780 420-428 NNP denotes mPAI2mPU
T5779 416-419 CC denotes and
T5778 414-415 DT denotes a
T5777 412-414 CD denotes .1
T5776 404-412 JJ denotes mPAI2mPU
T5775 402-403 : denotes :
T5774 400-402 CD denotes .1
T5773 388-400 NNP denotes pGLmP-539mPU
T5772 386-387 : denotes ;
T5771 375-386 NNP denotes mPAI2mEboxb
T5770 371-374 CC denotes and
T5769 359-370 NNS denotes mPAI2mEboxa
T5768 357-358 : denotes :
T5767 343-357 NN denotes pGLmP-539mEbox
T5766 341-342 : denotes :
T5765 334-341 VBZ denotes follows
T5764 331-333 IN denotes as
T5763 326-330 VBN denotes used
T5762 321-325 VBD denotes were
T5761 317-320 CC denotes and
T5760 315-316 , denotes ,
T5759 313-315 CD denotes S1
T5758 311-312 . denotes .
T5757 308-311 NNP denotes Fig
T5756 305-307 IN denotes in
T5755 296-304 VBN denotes provided
T5754 292-295 VBP denotes are
T5753 282-291 NNS denotes sequences
T5752 275-281 NN denotes primer
T5751 271-274 NNP denotes PCR
T5750 255-270 NN denotes oligonucleotide
T5749 248-254 JJ denotes mutant
T5748 244-247 DT denotes The
T5747 242-243 . denotes .
T5746 241-242 NNP denotes ]
T5745 239-241 CD denotes 36
T5744 238-239 NNP denotes [
T5743 228-237 VBN denotes described
T5742 225-227 IN denotes as
T5741 215-224 VBN denotes generated
T5740 210-214 VBD denotes were
T5739 208-209 -RRB- denotes )
T5738 196-208 RB denotes respectively
T5737 192-195 NNP denotes EBP
T5736 191-192 NN denotes /
T5735 180-191 JJ denotes pGLmP-539mC
T5734 176-179 CC denotes and
T5733 162-175 JJ denotes pGLmP-539mOct
T5732 160-161 , denotes ,
T5731 158-160 CD denotes .1
T5730 146-158 NNP denotes pGLmP-539mPU
T5729 144-145 , denotes ,
T5728 130-144 NNP denotes pGLmP-539mEbox
T5727 129-130 -LRB- denotes (
T5726 123-128 NNP denotes C/EBP
T5725 119-122 CC denotes and
T5724 113-118 NN denotes Oct-1
T5723 111-112 , denotes ,
T5722 109-111 CD denotes .1
T5721 107-109 NNP denotes PU
T5720 105-106 , denotes ,
T5719 102-105 NN denotes box
T5718 100-101 NNP denotes E
T5717 92-99 NNS denotes regions
T5716 77-91 JJ denotes LPS-responsive
T5715 68-76 NN denotes promoter
T5714 59-67 NNP denotes SerpinB2
T5713 55-58 DT denotes the
T5712 52-54 IN denotes in
T5711 42-51 NNS denotes mutations
T5710 31-41 VBG denotes containing
T5709 20-30 VBZ denotes constructs
T5708 11-19 NN denotes reporter
R4068 T5707 T5708 compound Luciferase,reporter
R4069 T5708 T5709 nsubj reporter,constructs
R4070 T5709 T5709 ROOT constructs,constructs
R4071 T5710 T5710 ROOT containing,containing
R4072 T5711 T5710 dobj mutations,containing
R4073 T5712 T5711 prep in,mutations
R4074 T5713 T5715 det the,promoter
R4075 T5714 T5715 compound SerpinB2,promoter
R4076 T5715 T5719 compound promoter,box
R4077 T5716 T5717 amod LPS-responsive,regions
R4078 T5717 T5719 compound regions,box
R4079 T5718 T5719 compound E,box
R4080 T5719 T5712 pobj box,in
R4081 T5720 T5710 punct ",",containing
R4082 T5721 T5722 compound PU,.1
R4083 T5722 T5724 nummod .1,Oct-1
R4084 T5723 T5722 punct ",",.1
R4085 T5724 T5710 appos Oct-1,containing
R4086 T5725 T5724 cc and,Oct-1
R4087 T5726 T5724 conj C/EBP,Oct-1
R4088 T5727 T5728 punct (,pGLmP-539mEbox
R4089 T5728 T5726 appos pGLmP-539mEbox,C/EBP
R4090 T5729 T5728 punct ",",pGLmP-539mEbox
R4091 T5730 T5726 conj pGLmP-539mPU,C/EBP
R4092 T5731 T5730 nummod .1,pGLmP-539mPU
R4093 T5732 T5730 punct ",",pGLmP-539mPU
R4094 T5733 T5730 conj pGLmP-539mOct,pGLmP-539mPU
R4095 T5734 T5733 cc and,pGLmP-539mOct
R4096 T5735 T5733 conj pGLmP-539mC,pGLmP-539mOct
R4097 T5736 T5737 compound /,EBP
R4098 T5737 T5741 nsubjpass EBP,generated
R4099 T5738 T5737 advmod respectively,EBP
R4100 T5739 T5741 punct ),generated
R4101 T5740 T5741 auxpass were,generated
R4102 T5741 T5709 ccomp generated,constructs
R4103 T5742 T5743 mark as,described
R4104 T5743 T5741 advcl described,generated
R4105 T5744 T5746 nmod [,]
R4106 T5745 T5746 nummod 36,]
R4107 T5746 T5743 dobj ],described
R4108 T5747 T5709 punct .,constructs
R4109 T5748 T5753 det The,sequences
R4110 T5749 T5753 amod mutant,sequences
R4111 T5750 T5753 compound oligonucleotide,sequences
R4112 T5751 T5752 compound PCR,primer
R4113 T5752 T5753 compound primer,sequences
R4114 T5753 T5755 nsubjpass sequences,provided
R4115 T5754 T5755 auxpass are,provided
R4116 T5755 T5755 ROOT provided,provided
R4117 T5756 T5755 prep in,provided
R4118 T5757 T5756 pobj Fig,in
R4119 T5758 T5755 punct .,provided
R4120 T5759 T5763 nsubjpass S1,used
R4121 T5760 T5759 punct ",",S1
R4122 T5761 T5759 cc and,S1
R4123 T5762 T5763 auxpass were,used
R4124 T5763 T5763 ROOT used,used
R4125 T5764 T5765 mark as,follows
R4126 T5765 T5763 advcl follows,used
R4127 T5766 T5767 punct :,pGLmP-539mEbox
R4128 T5767 T5767 ROOT pGLmP-539mEbox,pGLmP-539mEbox
R4129 T5768 T5767 punct :,pGLmP-539mEbox
R4130 T5769 T5767 appos mPAI2mEboxa,pGLmP-539mEbox
R4131 T5770 T5769 cc and,mPAI2mEboxa
R4132 T5771 T5769 conj mPAI2mEboxb,mPAI2mEboxa
R4133 T5772 T5767 punct ;,pGLmP-539mEbox
R4134 T5773 T5767 conj pGLmP-539mPU,pGLmP-539mEbox
R4135 T5774 T5773 nummod .1,pGLmP-539mPU
R4136 T5775 T5777 punct :,.1
R4137 T5776 T5777 compound mPAI2mPU,.1
R4138 T5777 T5767 appos .1,pGLmP-539mEbox
R4139 T5778 T5782 det a,b
R4140 T5779 T5778 cc and,a
R4141 T5780 T5782 nmod mPAI2mPU,b
R4142 T5781 T5782 nummod .1,b
R4143 T5782 T5777 appos b,.1
R4144 T5783 T5784 punct ;,pGLmP-539mOct
R4145 T5784 T5767 appos pGLmP-539mOct,pGLmP-539mEbox
R4146 T5785 T5784 punct :,pGLmP-539mOct
R4147 T5786 T5784 appos mPAI2mOct-2a,pGLmP-539mOct
R4148 T5787 T5786 cc and,mPAI2mOct-2a
R4149 T5788 T5786 conj mPAI2mOct-2b,mPAI2mOct-2a
R4150 T5789 T5792 punct ;,EBP
R4151 T5790 T5792 compound pGLmP-539mC,EBP
R4152 T5791 T5792 compound /,EBP
R4153 T5792 T5784 conj EBP,pGLmP-539mOct
R4154 T5793 T5792 punct :,EBP
R4155 T5794 T5792 appos mPAI2mCEBPa,EBP
R4156 T5795 T5794 cc and,mPAI2mCEBPa
R4157 T5796 T5794 conj mPAI2mCEBPb,mPAI2mCEBPa
R4158 T5797 T5792 punct .,EBP
R4159 T5798 T5801 det The,primers
R4160 T5799 T5801 compound oligonucleotide,primers
R4161 T5800 T5801 compound PCR,primers
R4162 T5801 T5802 nsubj primers,used
R4163 T5802 T5802 ROOT used,used
R4164 T5803 T5804 aux to,generate
R4165 T5804 T5802 xcomp generate,used
R4166 T5805 T5804 dobj mutants,generate
R4167 T5806 T5805 punct ",",mutants
R4168 T5807 T5805 appos pGLmP-539mCRE,mutants
R4169 T5808 T5807 punct ",",pGLmP-539mCRE
R4170 T5809 T5807 conj pGLmP-539mAP-1a,pGLmP-539mCRE
R4171 T5810 T5809 punct ",",pGLmP-539mAP-1a
R4172 T5811 T5809 cc and,pGLmP-539mAP-1a
R4173 T5812 T5809 conj pGLmP-539mAP-1b,pGLmP-539mAP-1a
R4174 T5813 T5814 auxpass were,reported
R4175 T5814 T5802 conj reported,used
R4176 T5815 T5814 advmod previously,reported
R4177 T5816 T5818 nmod [,]
R4178 T5817 T5818 nummod 37,]
R4179 T5818 T5814 dobj ],reported
R4180 T5819 T5802 punct .,used
R4181 T5820 T5824 det The,primers
R4182 T5821 T5824 amod flanking,primers
R4183 T5822 T5823 compound oligonucleotide,PCR
R4184 T5823 T5824 compound PCR,primers
R4185 T5824 T5825 nsubj primers,were
R4186 T5825 T5825 ROOT were,were
R4187 T5826 T5825 acomp RVprimer3,were
R4188 T5827 T5828 punct (,Promega
R4189 T5828 T5826 appos Promega,RVprimer3
R4190 T5829 T5828 punct ),Promega
R4191 T5830 T5826 cc and,RVprimer3
R4192 T5831 T5826 conj GLprimer2,RVprimer3
R4193 T5832 T5831 punct (,GLprimer2
R4194 T5833 T5831 appos Promega,GLprimer2
R4195 T5834 T5831 punct ),GLprimer2
R4196 T5835 T5825 punct .,were
R4197 T5836 T5838 nsubjpass pGLmP-539,used
R4198 T5837 T5838 auxpass was,used
R4199 T5838 T5838 ROOT used,used
R4200 T5839 T5838 prep as,used
R4201 T5840 T5841 det the,template
R4202 T5841 T5839 pobj template,as
R4203 T5842 T5838 prep in,used
R4204 T5843 T5844 det each,case
R4205 T5844 T5842 pobj case,in
R4206 T5845 T5838 punct .,used
R4207 T5846 T5848 amod Recombinant,products
R4208 T5847 T5848 compound PCR,products
R4209 T5848 T5850 nsubjpass products,digested
R4210 T5849 T5850 auxpass were,digested
R4211 T5850 T5850 ROOT digested,digested
R4212 T5851 T5850 prep with,digested
R4213 T5852 T5851 pobj EcoR,with
R4214 T5853 T5850 advcl I,digested
R4215 T5854 T5853 cc and,I
R4216 T5855 T5853 conj Xho,I
R4217 T5856 T5853 conj I,I
R4218 T5857 T5856 cc and,I
R4219 T5858 T5856 conj cloned,I
R4220 T5859 T5858 prep between,cloned
R4221 T5860 T5861 det the,EcoR
R4222 T5861 T5859 pobj EcoR,between
R4223 T5862 T5861 nummod I,EcoR
R4224 T5863 T5862 cc and,I
R4225 T5864 T5862 conj Xho,I
R4226 T5865 T5866 nsubj I,restriction
R4227 T5866 T5862 conj restriction,I
R4228 T5867 T5866 dobj sites,restriction
R4229 T5868 T5867 prep of,sites
R4230 T5869 T5868 pobj pGLmP-539,of
R4231 T5870 T5866 prep in,restriction
R4232 T5871 T5870 pobj place,in
R4233 T5872 T5871 prep of,place
R4234 T5873 T5878 det the,region
R4235 T5874 T5878 nmod −,region
R4236 T5875 T5874 nummod 539,−
R4237 T5876 T5878 amod /,region
R4238 T5877 T5878 nummod +92,region
R4239 T5878 T5872 pobj region,of
R4240 T5879 T5878 prep of,region
R4241 T5880 T5884 det the,promoter
R4242 T5881 T5884 amod wild-type,promoter
R4243 T5882 T5883 compound murine,SerpinB2
R4244 T5883 T5884 compound SerpinB2,promoter
R4245 T5884 T5879 pobj promoter,of
R4246 T5885 T5866 punct .,restriction
R4247 T5886 T5887 nsubj Sequence,verified
R4248 T5887 T5887 ROOT verified,verified
R4249 T5888 T5890 nsubjpass constructs,used
R4250 T5889 T5890 auxpass were,used
R4251 T5890 T5887 ccomp used,verified
R4252 T5891 T5890 prep in,used
R4253 T5892 T5893 det the,experiments
R4254 T5893 T5891 pobj experiments,in
R4255 T5894 T5887 punct .,verified

2_test

Id Subject Object Predicate Lexical cue
23472114-2744487-87899174 239-241 2744487 denotes 36
T12110 239-241 2744487 denotes 36

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5100 448-460 NN denotes mPAI2mOct-2a
T5099 446-447 -COLON- denotes :
T5098 433-446 NN denotes pGLmP-539mOct
T5097 431-432 -COLON- denotes ;
T5096 420-431 NN denotes mPAI2mPU.1b
T5095 416-419 CC denotes and
T5094 404-415 NN denotes mPAI2mPU.1a
T5093 402-403 -COLON- denotes :
T5092 388-402 NN denotes pGLmP-539mPU.1
T5091 386-387 -COLON- denotes ;
T5090 375-386 NN denotes mPAI2mEboxb
T5089 371-374 CC denotes and
T5088 359-370 NN denotes mPAI2mEboxa
T5087 357-358 -COLON- denotes :
T5086 343-357 NN denotes pGLmP-539mEbox
T5085 341-342 -COLON- denotes :
T5084 334-341 VB denotes follows
T5083 331-333 IN denotes as
T5082 326-330 VB denotes used
T5081 321-325 VB denotes were
T5080 317-320 CC denotes and
T5079 315-316 -COMMA- denotes ,
T5078 313-315 NN denotes S1
T5077 308-312 NNP denotes Fig.
T5076 305-307 IN denotes in
T5075 296-304 VB denotes provided
T5074 292-295 VB denotes are
T5073 282-291 NN denotes sequences
T5072 275-281 NN denotes primer
T5071 271-274 NN denotes PCR
T5070 255-270 NN denotes oligonucleotide
T5069 248-254 JJ denotes mutant
T5068 244-247 DT denotes The
T5067 241-242 -RRB- denotes ]
T5066 239-241 CD denotes 36
T5065 238-239 -LRB- denotes [
T5064 228-237 VB denotes described
T5063 225-227 IN denotes as
T5062 215-224 VB denotes generated
T5061 210-214 VB denotes were
T5060 208-209 -RRB- denotes )
T5059 196-208 RB denotes respectively
T5058 180-195 NN denotes pGLmP-539mC/EBP
T5057 176-179 CC denotes and
T5056 162-175 NN denotes pGLmP-539mOct
T5055 160-161 -COMMA- denotes ,
T5054 146-160 NN denotes pGLmP-539mPU.1
T5053 144-145 -COMMA- denotes ,
T5052 130-144 NN denotes pGLmP-539mEbox
T5051 129-130 -LRB- denotes (
T5050 123-128 NN denotes C/EBP
T5049 119-122 CC denotes and
T5048 113-118 NN denotes Oct-1
T5047 111-112 -COMMA- denotes ,
T5046 107-111 NN denotes PU.1
T5045 105-106 -COMMA- denotes ,
T5044 102-105 NN denotes box
T5043 100-101 NN denotes E
T5042 92-99 NN denotes regions
T5041 77-91 JJ denotes LPS-responsive
T5040 68-76 NN denotes promoter
T5039 59-67 NN denotes SerpinB2
T5038 55-58 DT denotes the
T5037 52-54 IN denotes in
T5036 42-51 NN denotes mutations
T5035 31-41 VB denotes containing
T5034 20-30 NN denotes constructs
T5033 11-19 NN denotes reporter
T5032 0-10 NN denotes Luciferase
T5197 1059-1070 NN denotes experiments
T5196 1055-1058 DT denotes the
T5195 1052-1054 IN denotes in
T5194 1047-1051 VB denotes used
T5193 1042-1046 VB denotes were
T5192 1031-1041 NN denotes constructs
T5191 1022-1030 VB denotes verified
T5190 1013-1021 NN denotes Sequence
T5189 1003-1011 NN denotes promoter
T5188 994-1002 NN denotes SerpinB2
T5187 987-993 JJ denotes murine
T5186 977-986 JJ denotes wild-type
T5185 973-976 DT denotes the
T5184 970-972 IN denotes of
T5183 963-969 NN denotes region
T5182 954-962 NN denotes −539/+92
T5181 950-953 DT denotes the
T5180 947-949 IN denotes of
T5179 941-946 NN denotes place
T5178 938-940 IN denotes in
T5177 928-937 NN denotes pGLmP-539
T5176 925-927 IN denotes of
T5175 919-924 NN denotes sites
T5174 907-918 NN denotes restriction
T5173 905-906 CD denotes I
T5172 901-904 NN denotes Xho
T5171 897-900 CC denotes and
T5170 895-896 CD denotes I
T5169 890-894 NN denotes EcoR
T5168 886-889 DT denotes the
T5167 878-885 IN denotes between
T5166 871-877 VB denotes cloned
T5165 867-870 CC denotes and
T5164 865-866 NNP denotes I
T5163 861-864 NNP denotes Xho
T5162 857-860 CC denotes and
T5161 855-856 CD denotes I
T5160 850-854 NN denotes EcoR
T5159 845-849 IN denotes with
T5158 836-844 VB denotes digested
T5157 831-835 VB denotes were
T5156 822-830 NN denotes products
T5155 818-821 NN denotes PCR
T5154 806-817 JJ denotes Recombinant
T5153 790-794 NN denotes e in
T5152 786-790 DT denotes plat
T5151 784-786 IN denotes em
T5150 776-784 NN denotes as the t
T5149 773-776 DT denotes ed
T5148 771-773 IN denotes us
T5147 767-771 VB denotes was
T5146 764-767 VB denotes 39
T5145 755-764 NN denotes . pGLmP-5
T5144 754-755 -RRB- denotes )
T5143 747-754 NN denotes Promega
T5142 746-747 -LRB- denotes (
T5141 736-745 NN denotes GLprimer2
T5140 732-735 CC denotes and
T5139 730-731 -RRB- denotes )
T5138 723-730 NN denotes Promega
T5137 722-723 -LRB- denotes (
T5136 712-721 NN denotes RVprimer3
T5135 707-711 VB denotes were
T5134 699-706 NN denotes primers
T5133 695-698 NN denotes PCR
T5132 679-694 NN denotes oligonucleotide
T5131 670-678 NN denotes flanking
T5130 666-669 DT denotes The
T5129 663-664 -RRB- denotes ]
T5128 661-663 CD denotes 37
T5127 660-661 -LRB- denotes [
T5126 649-659 RB denotes previously
T5125 640-648 VB denotes reported
T5124 635-639 VB denotes were
T5123 619-634 NN denotes pGLmP-539mAP-1b
T5122 615-618 CC denotes and
T5121 613-614 -COMMA- denotes ,
T5120 598-613 NN denotes pGLmP-539mAP-1a
T5119 596-597 -COMMA- denotes ,
T5118 583-596 NN denotes pGLmP-539mCRE
T5117 581-582 -COMMA- denotes ,
T5116 574-581 NN denotes mutants
T5115 565-573 VB denotes generate
T5114 562-564 TO denotes to
T5113 557-561 VB denotes used
T5112 549-556 NN denotes primers
T5111 545-548 NN denotes PCR
T5110 529-544 NN denotes oligonucleotide
T5109 525-528 DT denotes The
T5108 512-523 NN denotes mPAI2mCEBPb
T5107 508-511 CC denotes and
T5106 496-507 NN denotes mPAI2mCEBPa
T5105 494-495 -COLON- denotes :
T5104 479-494 NN denotes pGLmP-539mC/EBP
T5103 477-478 -COLON- denotes ;
T5102 465-477 NN denotes mPAI2mOct-2b
T5101 461-464 CC denotes and
R3664 T5034 T5032 arg1Of constructs,Luciferase
R3665 T5034 T5033 arg1Of constructs,reporter
R3666 T5034 T5035 arg1Of constructs,containing
R3667 T5034 T5051 arg1Of constructs,(
R3668 T5034 T5061 arg1Of constructs,were
R3669 T5034 T5062 arg2Of constructs,generated
R3670 T5036 T5035 arg2Of mutations,containing
R3671 T5036 T5037 arg1Of mutations,in
R3672 T5036 T5045 arg1Of mutations,","
R3673 T5044 T5037 arg2Of box,in
R3674 T5044 T5038 arg1Of box,the
R3675 T5044 T5039 arg1Of box,SerpinB2
R3676 T5044 T5040 arg1Of box,promoter
R3677 T5044 T5041 arg1Of box,LPS-responsive
R3678 T5044 T5042 arg1Of box,regions
R3679 T5044 T5043 arg1Of box,E
R3680 T5046 T5047 arg1Of PU.1,","
R3681 T5047 T5049 arg1Of ",",and
R3682 T5048 T5047 arg2Of Oct-1,","
R3683 T5049 T5045 arg2Of and,","
R3684 T5050 T5049 arg2Of C/EBP,and
R3685 T5052 T5053 arg1Of pGLmP-539mEbox,","
R3686 T5053 T5055 arg1Of ",",","
R3687 T5054 T5053 arg2Of pGLmP-539mPU.1,","
R3688 T5055 T5057 arg1Of ",",and
R3689 T5056 T5055 arg2Of pGLmP-539mOct,","
R3690 T5057 T5051 arg2Of and,(
R3691 T5057 T5059 arg1Of and,respectively
R3692 T5058 T5057 arg2Of pGLmP-539mC/EBP,and
R3693 T5060 T5051 arg3Of ),(
R3694 T5062 T5061 arg2Of generated,were
R3695 T5062 T5063 arg1Of generated,as
R3696 T5064 T5063 arg2Of described,as
R3697 T5064 T5065 arg1Of described,[
R3698 T5066 T5065 arg2Of 36,[
R3699 T5067 T5065 arg3Of ],[
R3700 T5073 T5068 arg1Of sequences,The
R3701 T5073 T5069 arg1Of sequences,mutant
R3702 T5073 T5070 arg1Of sequences,oligonucleotide
R3703 T5073 T5071 arg1Of sequences,PCR
R3704 T5073 T5072 arg1Of sequences,primer
R3705 T5073 T5074 arg1Of sequences,are
R3706 T5073 T5075 arg2Of sequences,provided
R3707 T5073 T5081 arg1Of sequences,were
R3708 T5073 T5082 arg2Of sequences,used
R3709 T5075 T5074 arg2Of provided,are
R3710 T5075 T5076 arg1Of provided,in
R3711 T5075 T5080 arg1Of provided,and
R3712 T5078 T5076 arg2Of S1,in
R3713 T5078 T5077 arg1Of S1,Fig.
R3714 T5080 T5079 arg1Of and,","
R3715 T5082 T5080 arg2Of used,and
R3716 T5082 T5081 arg2Of used,were
R3717 T5083 T5082 arg3Of as,used
R3718 T5084 T5083 arg2Of follows,as
R3719 T5084 T5085 arg1Of follows,:
R3720 T5086 T5084 arg2Of pGLmP-539mEbox,follows
R3721 T5086 T5087 arg1Of pGLmP-539mEbox,:
R3722 T5086 T5093 arg1Of pGLmP-539mEbox,:
R3723 T5086 T5097 arg1Of pGLmP-539mEbox,;
R3724 T5086 T5099 arg1Of pGLmP-539mEbox,:
R3725 T5086 T5103 arg1Of pGLmP-539mEbox,;
R3726 T5086 T5105 arg1Of pGLmP-539mEbox,:
R3727 T5088 T5089 arg1Of mPAI2mEboxa,and
R3728 T5089 T5087 arg2Of and,:
R3729 T5089 T5091 arg1Of and,;
R3730 T5090 T5089 arg2Of mPAI2mEboxb,and
R3731 T5092 T5091 arg2Of pGLmP-539mPU.1,;
R3732 T5094 T5095 arg1Of mPAI2mPU.1a,and
R3733 T5095 T5093 arg2Of and,:
R3734 T5096 T5095 arg2Of mPAI2mPU.1b,and
R3735 T5098 T5097 arg2Of pGLmP-539mOct,;
R3736 T5100 T5101 arg1Of mPAI2mOct-2a,and
R3737 T5101 T5099 arg2Of and,:
R3738 T5102 T5101 arg2Of mPAI2mOct-2b,and
R3739 T5104 T5103 arg2Of pGLmP-539mC/EBP,;
R3740 T5106 T5107 arg1Of mPAI2mCEBPa,and
R3741 T5107 T5105 arg2Of and,:
R3742 T5108 T5107 arg2Of mPAI2mCEBPb,and
R3743 T5112 T5109 arg1Of primers,The
R3744 T5112 T5110 arg1Of primers,oligonucleotide
R3745 T5112 T5111 arg1Of primers,PCR
R3746 T5112 T5113 arg2Of primers,used
R3747 T5112 T5115 arg1Of primers,generate
R3748 T5112 T5117 arg1Of primers,","
R3749 T5112 T5124 arg1Of primers,were
R3750 T5112 T5125 arg2Of primers,reported
R3751 T5115 T5113 arg3Of generate,used
R3752 T5115 T5114 arg1Of generate,to
R3753 T5116 T5115 arg2Of mutants,generate
R3754 T5118 T5119 arg1Of pGLmP-539mCRE,","
R3755 T5119 T5122 arg1Of ",",and
R3756 T5120 T5119 arg2Of pGLmP-539mAP-1a,","
R3757 T5122 T5117 arg2Of and,","
R3758 T5122 T5121 arg1Of and,","
R3759 T5123 T5122 arg2Of pGLmP-539mAP-1b,and
R3760 T5125 T5124 arg2Of reported,were
R3761 T5125 T5126 arg1Of reported,previously
R3762 T5125 T5127 arg1Of reported,[
R3763 T5128 T5127 arg2Of 37,[
R3764 T5129 T5127 arg3Of ],[
R3765 T5134 T5130 arg1Of primers,The
R3766 T5134 T5131 arg1Of primers,flanking
R3767 T5134 T5132 arg1Of primers,oligonucleotide
R3768 T5134 T5133 arg1Of primers,PCR
R3769 T5134 T5135 arg1Of primers,were
R3770 T5136 T5137 arg1Of RVprimer3,(
R3771 T5136 T5140 arg1Of RVprimer3,and
R3772 T5138 T5137 arg2Of Promega,(
R3773 T5139 T5137 arg3Of ),(
R3774 T5140 T5135 arg2Of and,were
R3775 T5140 T5146 modOf and,39
R3776 T5141 T5140 arg2Of GLprimer2,and
R3777 T5141 T5142 arg1Of GLprimer2,(
R3778 T5143 T5142 arg2Of Promega,(
R3779 T5144 T5142 arg3Of ),(
R3780 T5145 T5146 arg1Of . pGLmP-5,39
R3781 T5145 T5147 arg2Of . pGLmP-5,was
R3782 T5147 T5146 arg2Of was ,39
R3783 T5147 T5148 arg1Of was ,us
R3784 T5150 T5148 arg2Of as the t,us
R3785 T5150 T5149 arg1Of as the t,ed
R3786 T5150 T5151 arg1Of as the t,em
R3787 T5153 T5151 arg2Of e in,em
R3788 T5153 T5152 arg1Of e in,plat
R3789 T5156 T5154 arg1Of products,Recombinant
R3790 T5156 T5155 arg1Of products,PCR
R3791 T5156 T5157 arg1Of products,were
R3792 T5156 T5158 arg2Of products,digested
R3793 T5156 T5166 arg2Of products,cloned
R3794 T5158 T5159 arg1Of digested,with
R3795 T5158 T5165 arg1Of digested,and
R3796 T5160 T5161 arg1Of EcoR,I
R3797 T5160 T5162 arg1Of EcoR,and
R3798 T5162 T5159 arg2Of and,with
R3799 T5164 T5162 arg2Of I,and
R3800 T5164 T5163 arg1Of I,Xho
R3801 T5165 T5157 arg2Of and,were
R3802 T5166 T5165 arg2Of cloned,and
R3803 T5166 T5167 arg1Of cloned,between
R3804 T5166 T5178 arg1Of cloned,in
R3805 T5170 T5171 arg1Of I,and
R3806 T5172 T5171 arg2Of Xho,and
R3807 T5175 T5167 arg2Of sites,between
R3808 T5175 T5168 arg1Of sites,the
R3809 T5175 T5169 arg1Of sites,EcoR
R3810 T5175 T5170 arg1Of sites,I
R3811 T5175 T5172 arg1Of sites,Xho
R3812 T5175 T5173 arg1Of sites,I
R3813 T5175 T5174 arg1Of sites,restriction
R3814 T5175 T5176 arg1Of sites,of
R3815 T5177 T5176 arg2Of pGLmP-539,of
R3816 T5179 T5178 arg2Of place,in
R3817 T5179 T5180 arg1Of place,of
R3818 T5183 T5180 arg2Of region,of
R3819 T5183 T5181 arg1Of region,the
R3820 T5183 T5182 arg1Of region,−539/+92
R3821 T5183 T5184 arg1Of region,of
R3822 T5189 T5184 arg2Of promoter,of
R3823 T5189 T5185 arg1Of promoter,the
R3824 T5189 T5186 arg1Of promoter,wild-type
R3825 T5189 T5187 arg1Of promoter,murine
R3826 T5189 T5188 arg1Of promoter,SerpinB2
R3827 T5190 T5191 arg1Of Sequence,verified
R3828 T5192 T5193 arg1Of constructs,were
R3829 T5192 T5194 arg2Of constructs,used
R3830 T5194 T5191 arg2Of used,verified
R3831 T5194 T5193 arg2Of used,were
R3832 T5194 T5195 arg1Of used,in
R3833 T5197 T5195 arg2Of experiments,in
R3834 T5197 T5196 arg1Of experiments,the

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4800 994-1002 Protein denotes SerpinB2
T4799 861-866 Protein denotes Xho I
T4798 850-856 Protein denotes EcoR I
T4797 59-67 Protein denotes SerpinB2
T4796 0-19 Protein denotes Luciferase reporter

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5247 107-111 http://www.uniprot.org/uniprot/P17947 denotes PU.1
T5246 0-10 http://www.uniprot.org/uniprot/P08659 denotes Luciferase
T5244 994-1002 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T5243 59-67 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

sentences

Id Subject Object Predicate Lexical cue
T4752 1013-1071 Sentence denotes Sequence verified constructs were used in the experiments.
T4751 806-1012 Sentence denotes Recombinant PCR products were digested with EcoR I and Xho I and cloned between the EcoR I and Xho I restriction sites of pGLmP-539 in place of the −539/+92 region of the wild-type murine SerpinB2 promoter.
T4750 666-805 Sentence denotes The flanking oligonucleotide PCR primers were RVprimer3 (Promega) and GLprimer2 (Promega). pGLmP-539 was used as the template in each case.
T4749 525-665 Sentence denotes The oligonucleotide PCR primers used to generate mutants, pGLmP-539mCRE, pGLmP-539mAP-1a, and pGLmP-539mAP-1b were reported previously [37].
T4748 244-524 Sentence denotes The mutant oligonucleotide PCR primer sequences are provided in Fig. S1, and were used as follows: pGLmP-539mEbox: mPAI2mEboxa and mPAI2mEboxb; pGLmP-539mPU.1: mPAI2mPU.1a and mPAI2mPU.1b; pGLmP-539mOct: mPAI2mOct-2a and mPAI2mOct-2b; pGLmP-539mC/EBP: mPAI2mCEBPa and mPAI2mCEBPb.
T4747 0-243 Sentence denotes Luciferase reporter constructs containing mutations in the SerpinB2 promoter LPS-responsive regions E box, PU.1, Oct-1 and C/EBP (pGLmP-539mEbox, pGLmP-539mPU.1, pGLmP-539mOct and pGLmP-539mC/EBP respectively) were generated as described [36].
T63 0-243 Sentence denotes Luciferase reporter constructs containing mutations in the SerpinB2 promoter LPS-responsive regions E box, PU.1, Oct-1 and C/EBP (pGLmP-539mEbox, pGLmP-539mPU.1, pGLmP-539mOct and pGLmP-539mC/EBP respectively) were generated as described [36].
T64 244-524 Sentence denotes The mutant oligonucleotide PCR primer sequences are provided in Fig. S1, and were used as follows: pGLmP-539mEbox: mPAI2mEboxa and mPAI2mEboxb; pGLmP-539mPU.1: mPAI2mPU.1a and mPAI2mPU.1b; pGLmP-539mOct: mPAI2mOct-2a and mPAI2mOct-2b; pGLmP-539mC/EBP: mPAI2mCEBPa and mPAI2mCEBPb.
T65 525-665 Sentence denotes The oligonucleotide PCR primers used to generate mutants, pGLmP-539mCRE, pGLmP-539mAP-1a, and pGLmP-539mAP-1b were reported previously [37].
T66 666-805 Sentence denotes The flanking oligonucleotide PCR primers were RVprimer3 (Promega) and GLprimer2 (Promega). pGLmP-539 was used as the template in each case.
T67 806-1012 Sentence denotes Recombinant PCR products were digested with EcoR I and Xho I and cloned between the EcoR I and Xho I restriction sites of pGLmP-539 in place of the −539/+92 region of the wild-type murine SerpinB2 promoter.
T68 1013-1071 Sentence denotes Sequence verified constructs were used in the experiments.

simple1

Id Subject Object Predicate Lexical cue
T4820 994-1002 Protein denotes SerpinB2
T4819 861-866 Protein denotes Xho I
T4818 850-856 Protein denotes EcoR I
T4817 59-67 Protein denotes SerpinB2
T4816 0-19 Protein denotes Luciferase reporter

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T5237 994-1002 Protein denotes SerpinB2
T5236 861-866 Protein denotes Xho I
T5235 850-856 Protein denotes EcoR I
T5234 59-67 Protein denotes SerpinB2
T5233 0-19 Protein denotes Luciferase reporter

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T5308 994-1002 Protein denotes SerpinB2
T5307 861-866 Protein denotes Xho I
T5306 850-856 Protein denotes EcoR I
T5305 59-67 Protein denotes SerpinB2
T5304 0-19 Protein denotes Luciferase reporter

DLUT931

Id Subject Object Predicate Lexical cue
T5267 994-1002 Protein denotes SerpinB2
T5266 861-866 Protein denotes Xho I
T5265 850-856 Protein denotes EcoR I
T5264 59-67 Protein denotes SerpinB2
T5263 0-19 Protein denotes Luciferase reporter

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T5475 344-348 Protein denotes GLmP
T5474 480-484 Protein denotes GLmP
T5473 886-896 Protein denotes the EcoR I
T5471 479-494 Protein denotes pGLmP-539mC/EBP
T5470 695-698 Protein denotes PCR
T5469 55-91 Entity denotes the SerpinB2 promoter LPS-responsive
T5465 666-706 Entity denotes The flanking oligonucleotide PCR primers
T5461 59-67 Protein denotes SerpinB2
T5460 861-866 Protein denotes Xho I
T5459 308-311 Protein denotes Fig
T5458 513-517 Protein denotes PAI2
T5457 598-613 Protein denotes pGLmP-539mAP-1a
T5454 434-438 Protein denotes GLmP
T5453 123-128 Protein denotes C/EBP
T5452 599-603 Protein denotes GLmP
T5448 994-1002 Protein denotes SerpinB2
T5447 970-1011 Entity denotes of the wild-type murine SerpinB2 promoter
T5442 512-523 Protein denotes mPAI2mCEBPb
T5441 244-291 Entity denotes The mutant oligonucleotide PCR primer sequences
T5438 180-195 Protein denotes pGLmP-539mC/EBP
T5436 496-507 Protein denotes mPAI2mCEBPa
T5432 497-501 Protein denotes PAI2
T5429 619-634 Protein denotes pGLmP-539mAP-1b
T5428 583-593 Protein denotes pGLmP-539m
T5426 525-556 Entity denotes The oligonucleotide PCR primers
T5423 0-10 Protein denotes Luciferase
T5419 620-624 Protein denotes GLmP
T5418 818-821 Protein denotes PCR
T5415 107-111 Protein denotes PU.1
T5412 131-135 Protein denotes GLmP
T5410 162-175 Protein denotes pGLmP-539mOct
T5408 545-548 Protein denotes PCR
T5406 929-933 Protein denotes GLmP
T5404 901-906 Protein denotes Xho I
T5402 806-830 Entity denotes Recombinant PCR products
T5400 433-446 Protein denotes pGLmP-539mOct
T5398 92-112 Entity denotes regions E box, PU.1,
T5396 163-167 Protein denotes GLmP
T5394 928-937 Entity denotes pGLmP-539
T5392 271-274 Protein denotes PCR
T5391 850-856 Protein denotes EcoR I
T5389 181-185 Protein denotes GLmP
R3842 T5447 T5448 partOf of the wild-type murine SerpinB2 promoter,SerpinB2
R3843 T5469 T5461 partOf the SerpinB2 promoter LPS-responsive,SerpinB2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T5348 994-1011 Protein denotes SerpinB2 promoter
T5347 901-906 Protein denotes Xho I
T5346 890-896 Protein denotes EcoR I
T5345 861-866 Protein denotes Xho I
T5344 850-856 Protein denotes EcoR I
T5343 806-830 Protein denotes Recombinant PCR products
T5342 512-523 Protein denotes mPAI2mCEBPb
T5341 496-507 Protein denotes mPAI2mCEBPa
T5340 479-494 Protein denotes pGLmP-539mC/EBP
T5339 465-477 Protein denotes mPAI2mOct-2b
T5338 448-460 Protein denotes mPAI2mOct-2a
T5337 433-446 Protein denotes pGLmP-539mOct
T5336 420-431 Protein denotes mPAI2mPU.1b
T5335 404-415 Protein denotes mPAI2mPU.1a
T5334 308-311 Protein denotes Fig
T5333 123-128 Protein denotes C/EBP
T5332 113-118 Protein denotes Oct-1
T5331 107-111 Protein denotes PU.1
T5330 0-30 Protein denotes Luciferase reporter constructs

testone

Id Subject Object Predicate Lexical cue
T4695 994-1002 Protein denotes SerpinB2
T4694 861-866 Protein denotes Xho I
T4693 850-856 Protein denotes EcoR I
T4692 59-67 Protein denotes SerpinB2
T4691 0-19 Protein denotes Luciferase reporter

test3

Id Subject Object Predicate Lexical cue
T4740 994-1002 Protein denotes SerpinB2
T4739 861-866 Protein denotes Xho I
T4738 850-856 Protein denotes EcoR I
T4737 59-67 Protein denotes SerpinB2
T4736 0-19 Protein denotes Luciferase reporter
T4718 994-1002 Protein denotes SerpinB2
T4717 861-866 Protein denotes Xho I
T4716 850-856 Protein denotes EcoR I
T4715 59-67 Protein denotes SerpinB2
T4714 0-19 Protein denotes Luciferase reporter