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PMC:3586680 / 4779-5000 JSONTXT

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bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2301 117-126 Regulation denotes regulated
T2300 130-150 Protein denotes cytochrome c oxidase
R1544 T2300 T2301 themeOf cytochrome c oxidase,regulated

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3228 220-221 . denotes .
T3227 219-220 -RRB- denotes )
T3226 215-219 CD denotes 2011
T3225 213-214 , denotes ,
T3224 210-213 FW denotes al.
T3223 207-209 FW denotes et
T3222 201-206 NNP denotes Oliva
T3221 200-201 -LRB- denotes (
T3220 192-199 NNS denotes gliomas
T3219 189-191 IN denotes in
T3218 178-188 NN denotes resistance
T3217 174-177 NNP denotes TMZ
T3216 171-173 TO denotes to
T3215 166-170 NN denotes part
T3214 163-165 IN denotes in
T3213 151-162 VBZ denotes contributes
T3212 143-150 NN denotes oxidase
T3211 141-142 NN denotes c
T3210 130-140 NN denotes cytochrome
T3209 127-129 IN denotes by
T3208 117-126 VBN denotes regulated
T3207 115-116 -RRB- denotes )
T3206 112-115 NNP denotes ROS
T3205 111-112 -LRB- denotes (
T3204 103-110 NNS denotes species
T3203 96-102 NN denotes oxygen
T3202 87-95 JJ denotes reactive
T3201 84-86 IN denotes of
T3200 73-83 NN denotes production
T3199 69-72 DT denotes the
T3198 60-68 VB denotes suppress
T3197 57-59 TO denotes to
T3196 48-56 NN denotes coupling
T3195 42-47 NN denotes chain
T3194 30-41 JJ denotes respiratory
T3193 16-29 JJ denotes mitochondrial
T3192 13-15 IN denotes of
T3191 0-12 NNP denotes Upregulation
R2201 T3191 T3191 ROOT Upregulation,Upregulation
R2203 T3192 T3191 prep of,Upregulation
R2204 T3193 T3196 amod mitochondrial,coupling
R2206 T3194 T3195 amod respiratory,chain
R2207 T3195 T3196 compound chain,coupling
R2208 T3196 T3192 pobj coupling,of
R2211 T3197 T3198 aux to,suppress
R2212 T3198 T3191 advcl suppress,Upregulation
R2214 T3199 T3200 det the,production
R2215 T3200 T3198 dobj production,suppress
R2217 T3201 T3200 prep of,production
R2218 T3202 T3204 amod reactive,species
R2219 T3203 T3204 compound oxygen,species
R2221 T3204 T3201 pobj species,of
R2222 T3205 T3208 punct (,regulated
R2223 T3206 T3208 dep ROS,regulated
R2225 T3207 T3208 punct ),regulated
R2227 T3208 T3198 advcl regulated,suppress
R2229 T3209 T3208 agent by,regulated
R2230 T3210 T3212 compound cytochrome,oxidase
R2231 T3211 T3212 compound c,oxidase
R2233 T3212 T3209 pobj oxidase,by
R2234 T3213 T3208 punct contributes,regulated
R2236 T3214 T3213 prep in,contributes
R2237 T3215 T3214 pobj part,in
R2238 T3216 T3215 prep to,part
R2240 T3217 T3218 compound TMZ,resistance
R2241 T3218 T3216 pobj resistance,to
R2242 T3219 T3218 prep in,resistance
R2244 T3220 T3219 pobj gliomas,in
R2245 T3221 T3224 punct (,al.
R2246 T3222 T3224 compound Oliva,al.
R2248 T3223 T3224 nmod et,al.
R2249 T3224 T3208 dep al.,regulated
R2251 T3225 T3224 punct ",",al.
R2252 T3226 T3224 npadvmod 2011,al.
R2253 T3227 T3224 punct ),al.
R2255 T3228 T3191 punct .,Upregulation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2497 13-56 Binding denotes of mitochondrial respiratory chain coupling
T2495 57-110 Negative_regulation denotes to suppress the production of reactive oxygen species
T2492 0-110 Positive_regulation denotes Upregulation of mitochondrial respiratory chain coupling to suppress the production of reactive oxygen species
T2490 16-47 Entity denotes mitochondrial respiratory chain
T2467 174-177 Entity denotes TMZ
T2460 127-165 Protein denotes by cytochrome c oxidase contributes in
T2365 143-150 Protein denotes oxidase
T2362 112-115 Protein denotes ROS
R1573 T2490 T2497 themeOf mitochondrial respiratory chain,of mitochondrial respiratory chain coupling
R1575 T2497 T2492 themeOf of mitochondrial respiratory chain coupling,Upregulation of mitochondrial respiratory chain coupling to suppress the production of reactive oxygen species

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1607 219-220 -RRB- denotes )
T1606 215-219 CD denotes 2011
T1605 213-214 -COMMA- denotes ,
T1604 210-213 FW denotes al.
T1603 207-209 FW denotes et
T1602 201-206 NNP denotes Oliva
T1601 200-201 -LRB- denotes (
T1600 192-199 NN denotes gliomas
T1599 189-191 IN denotes in
T1598 178-188 NN denotes resistance
T1597 174-177 NN denotes TMZ
T1596 171-173 TO denotes to
T1595 166-170 NN denotes part
T1594 163-165 IN denotes in
T1593 151-162 VB denotes contributes
T1592 143-150 NN denotes oxidase
T1591 141-142 NN denotes c
T1590 130-140 NN denotes cytochrome
T1589 127-129 IN denotes by
T1588 117-126 VB denotes regulated
T1587 115-116 -RRB- denotes )
T1586 112-115 NN denotes ROS
T1585 111-112 -LRB- denotes (
T1584 103-110 NN denotes species
T1583 96-102 NN denotes oxygen
T1582 87-95 JJ denotes reactive
T1581 84-86 IN denotes of
T1580 73-83 NN denotes production
T1579 69-72 DT denotes the
T1578 60-68 VB denotes suppress
T1577 57-59 TO denotes to
T1576 48-56 NN denotes coupling
T1575 42-47 NN denotes chain
T1574 30-41 JJ denotes respiratory
T1573 16-29 JJ denotes mitochondrial
T1572 13-15 IN denotes of
T1571 0-12 NN denotes Upregulation
R1119 T1571 T1572 arg1Of Upregulation,of
R1120 T1571 T1577 modOf Upregulation,to
R1121 T1571 T1593 arg1Of Upregulation,contributes
R1122 T1576 T1572 arg2Of coupling,of
R1123 T1576 T1573 arg1Of coupling,mitochondrial
R1124 T1576 T1574 arg1Of coupling,respiratory
R1125 T1576 T1575 arg1Of coupling,chain
R1126 T1578 T1577 arg1Of suppress,to
R1127 T1580 T1578 arg2Of production,suppress
R1128 T1580 T1579 arg1Of production,the
R1129 T1580 T1581 arg1Of production,of
R1130 T1584 T1581 arg2Of species,of
R1131 T1584 T1582 arg1Of species,reactive
R1132 T1584 T1583 arg1Of species,oxygen
R1133 T1584 T1585 arg1Of species,(
R1134 T1584 T1588 arg2Of species,regulated
R1135 T1586 T1585 arg2Of ROS,(
R1136 T1587 T1585 arg3Of ),(
R1137 T1592 T1588 arg1Of oxidase,regulated
R1138 T1592 T1589 arg2Of oxidase,by
R1139 T1592 T1590 arg1Of oxidase,cytochrome
R1140 T1592 T1591 arg1Of oxidase,c
R1141 T1593 T1594 arg1Of contributes,in
R1142 T1593 T1596 arg1Of contributes,to
R1143 T1595 T1594 arg2Of part,in
R1144 T1598 T1596 arg2Of resistance,to
R1145 T1598 T1597 arg1Of resistance,TMZ
R1146 T1598 T1599 arg1Of resistance,in
R1147 T1600 T1599 arg2Of gliomas,in
R1148 T1600 T1601 arg1Of gliomas,(
R1149 T1602 T1601 arg2Of Oliva,(
R1150 T1602 T1603 arg1Of Oliva,et
R1151 T1602 T1604 arg1Of Oliva,al.
R1152 T1602 T1605 arg1Of Oliva,","
R1153 T1606 T1605 arg2Of 2011,","
R1154 T1607 T1601 arg3Of ),(

2_test

Id Subject Object Predicate Lexical cue
23459853-21931801-38778512 215-219 21931801 denotes 2011

GO-BP

Id Subject Object Predicate Lexical cue
T2013 130-150 http://purl.obolibrary.org/obo/GO_0008535 denotes cytochrome c oxidase
T2012 130-150 http://purl.obolibrary.org/obo/GO_0004129 denotes cytochrome c oxidase

GO-MF

Id Subject Object Predicate Lexical cue
T2033 130-150 http://purl.obolibrary.org/obo/GO_0004129 denotes cytochrome c oxidase
T2032 130-140 http://purl.obolibrary.org/obo/GO_0045158 denotes cytochrome
T2031 130-140 http://purl.obolibrary.org/obo/GO_0045157 denotes cytochrome
T2030 130-140 http://purl.obolibrary.org/obo/GO_0045156 denotes cytochrome
T2029 130-142 http://purl.obolibrary.org/obo/GO_0045155 denotes cytochrome c
T2028 130-140 http://purl.obolibrary.org/obo/GO_0045154 denotes cytochrome
T2027 130-140 http://purl.obolibrary.org/obo/GO_0045153 denotes cytochrome

GO-CC

Id Subject Object Predicate Lexical cue
T2047 30-47 http://purl.obolibrary.org/obo/GO_0070469 denotes respiratory chain
T2046 16-47 http://purl.obolibrary.org/obo/GO_0097249 denotes mitochondrial respiratory chain
T2045 16-47 http://purl.obolibrary.org/obo/GO_0005746 denotes mitochondrial respiratory chain

sentences

Id Subject Object Predicate Lexical cue
T897 0-221 Sentence denotes Upregulation of mitochondrial respiratory chain coupling to suppress the production of reactive oxygen species (ROS) regulated by cytochrome c oxidase contributes in part to TMZ resistance in gliomas (Oliva et al., 2011).
T33 0-221 Sentence denotes Upregulation of mitochondrial respiratory chain coupling to suppress the production of reactive oxygen species (ROS) regulated by cytochrome c oxidase contributes in part to TMZ resistance in gliomas (Oliva et al., 2011).