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PMC:3586680 / 3501-3672 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T848 19-23 Protein denotes MGMT
T847 5-15 Gene_expression denotes expression
T818 19-23 Protein denotes MGMT
R459 T848 T847 themeOf MGMT,expression

testone

Id Subject Object Predicate Lexical cue
T782 19-23 Protein denotes MGMT
T803 5-15 Gene_expression denotes expression
R448 T782 T803 themeOf MGMT,expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2282 27-31 Negative_regulation denotes loss
T2281 5-15 Gene_expression denotes expression
T2280 19-23 Protein denotes MGMT
R1530 T2280 T2281 themeOf MGMT,expression
R1532 T2281 T2282 themeOf expression,loss

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3003 170-171 . denotes .
T3002 169-170 -RRB- denotes )
T3001 165-169 CD denotes 2008
T3000 163-164 , denotes ,
T2999 160-163 FW denotes al.
T2998 157-159 FW denotes et
T2997 148-156 NNP denotes Sarkaria
T2996 146-147 : denotes ;
T2995 142-146 CD denotes 2008
T2994 140-141 , denotes ,
T2993 137-140 FW denotes al.
T2992 134-136 FW denotes et
T2991 129-133 NNP denotes Hegi
T2990 127-128 : denotes ;
T2989 123-127 CD denotes 2006
T2988 121-122 , denotes ,
T2987 118-121 FW denotes al.
T2986 115-117 FW denotes et
T2985 107-114 NNP denotes Pollack
T2984 106-107 -LRB- denotes (
T2983 100-105 NNS denotes cases
T2982 91-99 JJ denotes clinical
T2981 86-90 JJ denotes many
T2980 83-85 IN denotes in
T2979 72-82 NN denotes resistance
T2978 68-71 NNP denotes TMZ
T2977 65-67 TO denotes to
T2976 51-64 RB denotes significantly
T2975 39-50 VBZ denotes contributes
T2974 35-38 NNP denotes MMR
T2973 32-34 IN denotes of
T2972 27-31 NN denotes loss
T2971 24-26 CC denotes or
T2970 19-23 NNP denotes MGMT
T2969 16-18 IN denotes of
T2968 5-15 NN denotes expression
T2967 0-4 NNP denotes High
R2025 T2967 T2968 compound High,expression
R2026 T2968 T2975 nsubj expression,contributes
R2028 T2969 T2968 prep of,expression
R2029 T2970 T2969 pobj MGMT,of
R2030 T2971 T2970 cc or,MGMT
R2032 T2972 T2968 conj loss,expression
R2033 T2973 T2972 prep of,loss
R2034 T2974 T2973 pobj MMR,of
R2036 T2975 T2999 ccomp contributes,al.
R2037 T2976 T2975 advmod significantly,contributes
R2038 T2977 T2975 prep to,contributes
R2040 T2978 T2979 compound TMZ,resistance
R2041 T2979 T2977 pobj resistance,to
R2042 T2980 T2975 prep in,contributes
R2044 T2981 T2983 amod many,cases
R2045 T2982 T2983 amod clinical,cases
R2047 T2983 T2980 pobj cases,in
R2048 T2984 T2987 punct (,al.
R2049 T2985 T2987 compound Pollack,al.
R2051 T2986 T2987 nmod et,al.
R2054 T2987 T2975 advcl al.,contributes
R2055 T2988 T2987 punct ",",al.
R2057 T2989 T2987 npadvmod 2006,al.
R2058 T2990 T2999 punct ;,al.
R2059 T2991 T2993 compound Hegi,al.
R2060 T2992 T2993 nmod et,al.
R2062 T2993 T2999 ccomp al.,al.
R2063 T2994 T2993 punct ",",al.
R2065 T2995 T2993 npadvmod 2008,al.
R2067 T2996 T2999 punct ;,al.
R2068 T2997 T2999 compound Sarkaria,al.
R2069 T2998 T2999 nmod et,al.
R2071 T2999 T2999 ROOT al.,al.
R2072 T3000 T2999 punct ",",al.
R2073 T3001 T2999 npadvmod 2008,al.
R2075 T3002 T2999 punct ),al.
R2076 T3003 T2999 punct .,al.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2431 68-71 Entity denotes TMZ
T2423 19-23 Protein denotes MGMT
T2416 107-120 Entity denotes Pollack et al

DLUT931

Id Subject Object Predicate Lexical cue
T2190 39-50 Positive_regulation denotes contributes
T2189 27-31 Negative_regulation denotes loss
T2188 5-15 Gene_expression denotes expression
T2166 19-23 Protein denotes MGMT
R1494 T2166 T2188 themeOf MGMT,expression
R1504 T2188 T2189 themeOf expression,loss
R1505 T2188 T2190 themeOf expression,contributes

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2262 5-15 Gene_expression denotes expression
T2261 39-50 Positive_regulation denotes contributes
T2242 19-23 Protein denotes MGMT
R1522 T2242 T2262 themeOf MGMT,expression
R1542 T2262 T2261 themeOf expression,contributes

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2128 39-50 Positive_regulation denotes contributes
T2127 5-15 Gene_expression denotes expression
T2108 19-23 Protein denotes MGMT
R1477 T2108 T2127 themeOf MGMT,expression
R1488 T2127 T2128 themeOf expression,contributes

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2150 19-23 http://www.uniprot.org/uniprot/P16455 denotes MGMT

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1949 19-23 Protein denotes MGMT

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1393 169-170 -RRB- denotes )
T1392 165-169 CD denotes 2008
T1391 163-164 -COMMA- denotes ,
T1390 160-163 FW denotes al.
T1389 157-159 FW denotes et
T1388 148-156 NNP denotes Sarkaria
T1387 146-147 -COLON- denotes ;
T1386 142-146 CD denotes 2008
T1385 140-141 -COMMA- denotes ,
T1384 137-140 FW denotes al.
T1383 134-136 FW denotes et
T1382 129-133 NNP denotes Hegi
T1381 127-128 -COLON- denotes ;
T1380 123-127 CD denotes 2006
T1379 121-122 -COMMA- denotes ,
T1378 118-121 FW denotes al.
T1377 115-117 FW denotes et
T1376 107-114 NNP denotes Pollack
T1375 106-107 -LRB- denotes (
T1374 100-105 NN denotes cases
T1373 91-99 JJ denotes clinical
T1372 86-90 JJ denotes many
T1371 83-85 IN denotes in
T1370 72-82 NN denotes resistance
T1369 68-71 NN denotes TMZ
T1368 65-67 TO denotes to
T1367 51-64 RB denotes significantly
T1366 39-50 VB denotes contributes
T1365 35-38 NN denotes MMR
T1364 32-34 IN denotes of
T1363 27-31 NN denotes loss
T1362 24-26 CC denotes or
T1361 19-23 NN denotes MGMT
T1360 16-18 IN denotes of
T1359 5-15 NN denotes expression
T1358 0-4 JJ denotes High
R911 T1359 T1358 arg1Of expression,High
R912 T1359 T1360 arg1Of expression,of
R913 T1359 T1366 arg1Of expression,contributes
R914 T1361 T1362 arg1Of MGMT,or
R915 T1362 T1360 arg2Of or,of
R916 T1363 T1362 arg2Of loss,or
R917 T1363 T1364 arg1Of loss,of
R918 T1365 T1364 arg2Of MMR,of
R919 T1366 T1367 arg1Of contributes,significantly
R920 T1366 T1368 arg1Of contributes,to
R921 T1366 T1371 arg1Of contributes,in
R922 T1366 T1375 arg1Of contributes,(
R923 T1370 T1368 arg2Of resistance,to
R924 T1370 T1369 arg1Of resistance,TMZ
R925 T1374 T1371 arg2Of cases,in
R926 T1374 T1372 arg1Of cases,many
R927 T1374 T1373 arg1Of cases,clinical
R928 T1376 T1375 arg2Of Pollack,(
R929 T1376 T1377 arg1Of Pollack,et
R930 T1376 T1378 arg1Of Pollack,al.
R931 T1376 T1379 arg1Of Pollack,","
R932 T1376 T1381 arg1Of Pollack,;
R933 T1376 T1387 arg1Of Pollack,;
R934 T1380 T1379 arg2Of 2006,","
R935 T1382 T1381 arg2Of Hegi,;
R936 T1382 T1383 arg1Of Hegi,et
R937 T1382 T1384 arg1Of Hegi,al.
R938 T1382 T1385 arg1Of Hegi,","
R939 T1386 T1385 arg2Of 2008,","
R940 T1388 T1387 arg2Of Sarkaria,;
R941 T1388 T1389 arg1Of Sarkaria,et
R942 T1388 T1390 arg1Of Sarkaria,al.
R943 T1388 T1391 arg1Of Sarkaria,","
R944 T1392 T1391 arg2Of 2008,","
R945 T1393 T1375 arg3Of ),(

2_test

Id Subject Object Predicate Lexical cue
23459853-16849758-38778504 123-127 16849758 denotes 2006
23459853-18757334-38778505 142-146 18757334 denotes 2008
23459853-18483356-38778506 165-169 18483356 denotes 2008

GO-BP

Id Subject Object Predicate Lexical cue
T2002 35-38 http://purl.obolibrary.org/obo/GO_0006298 denotes MMR
T1993 19-23 http://purl.obolibrary.org/obo/GO_0003908 denotes MGMT

GO-MF

Id Subject Object Predicate Lexical cue
T2020 19-23 http://purl.obolibrary.org/obo/GO_0003908 denotes MGMT

sentences

Id Subject Object Predicate Lexical cue
T889 0-171 Sentence denotes High expression of MGMT or loss of MMR contributes significantly to TMZ resistance in many clinical cases (Pollack et al., 2006; Hegi et al., 2008; Sarkaria et al., 2008).
T25 0-171 Sentence denotes High expression of MGMT or loss of MMR contributes significantly to TMZ resistance in many clinical cases (Pollack et al., 2006; Hegi et al., 2008; Sarkaria et al., 2008).

simple1

Id Subject Object Predicate Lexical cue
T2056 19-23 Protein denotes MGMT