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PMC:3586680 / 14848-15055 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T7461 26-29 Protein denotes p53
T7439 26-29 Protein denotes p53

testone

Id Subject Object Predicate Lexical cue
T7414 26-29 Protein denotes p53

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7944 26-29 Protein denotes p53

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7999 55-57 TO denotes to
T7998 51-54 JJ denotes due
T7997 40-50 VBN denotes identified
T7996 35-39 VBN denotes been
T7995 30-34 VBP denotes have
T7994 26-29 NN denotes p53
T7993 23-25 IN denotes of
T7992 14-22 NNS denotes isoforms
T7991 9-13 CD denotes nine
T7990 3-8 JJS denotes least
T7989 0-2 IN denotes At
T8030 206-207 . denotes .
T8029 205-206 -RRB- denotes )
T8028 204-205 CD denotes 2
T8027 197-203 NN denotes Figure
T8026 195-196 : denotes ;
T8025 191-195 CD denotes 2006
T8024 189-190 , denotes ,
T8023 186-189 FW denotes al.
T8022 183-185 FW denotes et
T8021 179-182 NNP denotes Ray
T8020 177-178 : denotes ;
T8019 173-177 CD denotes 2004
T8018 171-172 , denotes ,
T8017 168-171 FW denotes al.
T8016 165-167 FW denotes et
T8015 159-164 NNP denotes Ghosh
T8014 158-159 -LRB- denotes (
T8013 146-157 NN denotes translation
T8012 143-145 IN denotes of
T8011 137-142 NNS denotes sites
T8010 126-136 NN denotes initiation
T8009 114-125 JJ denotes alternative
T8008 110-113 CC denotes and
T8007 108-109 , denotes ,
T8006 99-108 NNS denotes promoters
T8005 94-98 NN denotes gene
T8004 85-93 JJ denotes multiple
T8003 83-84 , denotes ,
T8002 75-83 NN denotes splicing
T8001 70-74 NNP denotes mRNA
T8000 58-69 JJ denotes alternative
R5527 T7989 T7990 advmod At,least
R5528 T7990 T7991 advmod least,nine
R5529 T7991 T7992 nummod nine,isoforms
R5530 T7992 T7997 nsubjpass isoforms,identified
R5531 T7993 T7992 prep of,isoforms
R5532 T7994 T7993 pobj p53,of
R5533 T7995 T7997 aux have,identified
R5534 T7996 T7997 auxpass been,identified
R5535 T7997 T7997 ROOT identified,identified
R5536 T7998 T8002 amod due,splicing
R5537 T7999 T8000 aux to,alternative
R5538 T8000 T7998 xcomp alternative,due
R5539 T8001 T8002 compound mRNA,splicing
R5540 T8002 T7997 dobj splicing,identified
R5541 T8003 T8002 punct ",",splicing
R5542 T8004 T8006 amod multiple,promoters
R5543 T8005 T8006 compound gene,promoters
R5544 T8006 T8002 conj promoters,splicing
R5545 T8007 T8006 punct ",",promoters
R5546 T8008 T8006 cc and,promoters
R5547 T8009 T8011 amod alternative,sites
R5548 T8010 T8011 compound initiation,sites
R5549 T8011 T8006 conj sites,promoters
R5550 T8012 T8011 prep of,sites
R5551 T8013 T8012 pobj translation,of
R5552 T8014 T8002 punct (,splicing
R5553 T8015 T8017 compound Ghosh,al.
R5554 T8016 T8017 nmod et,al.
R5555 T8017 T8002 appos al.,splicing
R5556 T8018 T8017 punct ",",al.
R5557 T8019 T8017 appos 2004,al.
R5558 T8020 T8002 punct ;,splicing
R5559 T8021 T8023 compound Ray,al.
R5560 T8022 T8023 nmod et,al.
R5561 T8023 T8002 conj al.,splicing
R5562 T8024 T8023 punct ",",al.
R5563 T8025 T8023 appos 2006,al.
R5564 T8026 T8023 punct ;,al.
R5565 T8027 T8023 appos Figure,al.
R5566 T8028 T8027 nummod 2,Figure
R5567 T8029 T8023 punct ),al.
R5568 T8030 T7997 punct .,identified

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8254 58-109 Binding denotes alternative mRNA splicing, multiple gene promoters,
T8244 179-182 Protein denotes Ray
T8241 85-108 Entity denotes multiple gene promoters
T8236 26-29 Protein denotes p53
T8218 85-108 Protein denotes multiple gene promoters
T8216 70-74 Protein denotes mRNA
R5742 T8216 T8254 themeOf mRNA,"alternative mRNA splicing, multiple gene promoters,"

DLUT931

Id Subject Object Predicate Lexical cue
T7855 26-29 Protein denotes p53

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7913 26-29 Protein denotes p53

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7792 26-29 Protein denotes p53

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7823 26-29 http://www.uniprot.org/uniprot/P04637 denotes p53

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7552 26-29 Protein denotes p53

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7660 205-206 -RRB- denotes )
T7659 204-205 CD denotes 2
T7658 197-203 NN denotes Figure
T7657 195-196 -COLON- denotes ;
T7656 191-195 CD denotes 2006
T7655 189-190 -COMMA- denotes ,
T7654 186-189 FW denotes al.
T7653 183-185 FW denotes et
T7652 179-182 NNP denotes Ray
T7651 177-178 -COLON- denotes ;
T7650 173-177 CD denotes 2004
T7649 171-172 -COMMA- denotes ,
T7648 168-171 FW denotes al.
T7647 165-167 FW denotes et
T7646 159-164 NNP denotes Ghosh
T7645 158-159 -LRB- denotes (
T7644 146-157 NN denotes translation
T7643 143-145 IN denotes of
T7642 137-142 NN denotes sites
T7641 126-136 NN denotes initiation
T7640 114-125 JJ denotes alternative
T7639 110-113 CC denotes and
T7638 108-109 -COMMA- denotes ,
T7637 99-108 NN denotes promoters
T7636 94-98 NN denotes gene
T7635 85-93 JJ denotes multiple
T7634 83-84 -COMMA- denotes ,
T7633 75-83 NN denotes splicing
T7632 70-74 NN denotes mRNA
T7631 58-69 JJ denotes alternative
T7630 55-57 TO denotes to
T7629 51-54 JJ denotes due
T7628 40-50 VB denotes identified
T7627 35-39 VB denotes been
T7626 30-34 VB denotes have
T7625 26-29 NN denotes p53
T7624 23-25 IN denotes of
T7623 14-22 NN denotes isoforms
T7622 9-13 CD denotes nine
T7621 3-8 JJ denotes least
T7620 0-2 IN denotes At
R5250 T7622 T7620 arg1Of nine,At
R5251 T7622 T7621 arg1Of nine,least
R5252 T7623 T7622 arg1Of isoforms,nine
R5253 T7623 T7624 arg1Of isoforms,of
R5254 T7623 T7626 arg1Of isoforms,have
R5255 T7623 T7627 arg1Of isoforms,been
R5256 T7623 T7628 arg2Of isoforms,identified
R5257 T7625 T7624 arg2Of p53,of
R5258 T7628 T7626 arg2Of identified,have
R5259 T7628 T7627 arg2Of identified,been
R5260 T7628 T7630 arg1Of identified,to
R5261 T7628 T7645 arg1Of identified,(
R5262 T7630 T7629 arg1Of to,due
R5263 T7633 T7631 arg1Of splicing,alternative
R5264 T7633 T7632 arg1Of splicing,mRNA
R5265 T7633 T7634 arg1Of splicing,","
R5266 T7634 T7639 arg1Of ",",and
R5267 T7637 T7634 arg2Of promoters,","
R5268 T7637 T7635 arg1Of promoters,multiple
R5269 T7637 T7636 arg1Of promoters,gene
R5270 T7639 T7630 arg2Of and,to
R5271 T7639 T7638 arg1Of and,","
R5272 T7642 T7639 arg2Of sites,and
R5273 T7642 T7640 arg1Of sites,alternative
R5274 T7642 T7641 arg1Of sites,initiation
R5275 T7642 T7643 arg1Of sites,of
R5276 T7644 T7643 arg2Of translation,of
R5277 T7646 T7645 arg2Of Ghosh,(
R5278 T7646 T7647 arg1Of Ghosh,et
R5279 T7646 T7648 arg1Of Ghosh,al.
R5280 T7646 T7649 arg1Of Ghosh,","
R5281 T7646 T7651 arg1Of Ghosh,;
R5282 T7646 T7657 arg1Of Ghosh,;
R5283 T7650 T7649 arg2Of 2004,","
R5284 T7652 T7653 arg1Of Ray,et
R5285 T7652 T7654 arg1Of Ray,al.
R5286 T7652 T7655 arg1Of Ray,","
R5287 T7655 T7651 arg2Of ",",;
R5288 T7656 T7655 arg2Of 2006,","
R5289 T7658 T7657 arg2Of Figure,;
R5290 T7658 T7659 arg1Of Figure,2
R5291 T7660 T7645 arg3Of ),(

2_test

Id Subject Object Predicate Lexical cue
23459853-15340061-38778576 173-177 15340061 denotes 2004
23459853-16440000-38778577 191-195 16440000 denotes 2006

GO-BP

Id Subject Object Predicate Lexical cue
T7580 146-157 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T7579 75-83 http://purl.obolibrary.org/obo/GO_0045292 denotes splicing
T7578 70-83 http://purl.obolibrary.org/obo/GO_0000398 denotes mRNA splicing
T7577 70-83 http://purl.obolibrary.org/obo/GO_0000394 denotes mRNA splicing
T7576 70-83 http://purl.obolibrary.org/obo/GO_0000374 denotes mRNA splicing
T7575 70-83 http://purl.obolibrary.org/obo/GO_0000373 denotes mRNA splicing
T7574 70-83 http://purl.obolibrary.org/obo/GO_0000372 denotes mRNA splicing

sentences

Id Subject Object Predicate Lexical cue
T7491 0-207 Sentence denotes At least nine isoforms of p53 have been identified due to alternative mRNA splicing, multiple gene promoters, and alternative initiation sites of translation (Ghosh et al., 2004; Ray et al., 2006; Figure 2).
T104 0-207 Sentence denotes At least nine isoforms of p53 have been identified due to alternative mRNA splicing, multiple gene promoters, and alternative initiation sites of translation (Ghosh et al., 2004; Ray et al., 2006; Figure 2).

simple1

Id Subject Object Predicate Lexical cue
T7598 26-29 Protein denotes p53