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PMC:3586680 / 12874-13709 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T6772 794-798 Protein denotes VIα1
T6771 775-789 Protein denotes collagens IIα1
T6770 731-752 Protein denotes smooth muscle α-actin
T6769 652-655 Protein denotes p53
T6768 474-477 Protein denotes p53
T6767 443-448 Protein denotes BCL-2
T6766 409-419 Negative_regulation denotes inhibiting
T6765 400-403 Protein denotes FAS
T6764 388-394 Protein denotes SCOTIN
T6763 382-386 Protein denotes PUMA
T6762 377-380 Protein denotes BAX
T6761 309-312 Protein denotes p53
T6760 302-307 Protein denotes miR34
T6759 285-288 Protein denotes p21
T6758 275-284 Negative_regulation denotes inhibitor
T6757 188-191 Protein denotes p53
T6756 142-145 Protein denotes p53
T6755 10-13 Protein denotes p53
T6754 794-798 Protein denotes VIα1
T6753 775-789 Protein denotes collagens IIα1
T6752 731-752 Protein denotes smooth muscle α-actin
T6751 652-655 Protein denotes p53
T6750 474-477 Protein denotes p53
T6749 443-448 Protein denotes BCL-2
T6748 400-403 Protein denotes FAS
T6747 388-394 Protein denotes SCOTIN
T6746 382-386 Protein denotes PUMA
T6745 377-380 Protein denotes BAX
T6744 309-312 Protein denotes p53
T6743 302-307 Protein denotes miR34
T6742 285-288 Protein denotes p21
T6741 188-191 Protein denotes p53
T6740 142-145 Protein denotes p53
T6739 10-13 Protein denotes p53
R4779 T6759 T6758 themeOf p21,inhibitor
R4780 T6767 T6766 themeOf BCL-2,inhibiting

testone

Id Subject Object Predicate Lexical cue
T6738 717-727 Gene_expression denotes expression
T6737 702-712 Regulation denotes regulating
T6736 409-419 Negative_regulation denotes inhibiting
T6735 794-798 Protein denotes VIα1
T6734 775-789 Protein denotes collagens IIα1
T6733 731-752 Protein denotes smooth muscle α-actin
T6732 652-655 Protein denotes p53
T6731 474-477 Protein denotes p53
T6730 443-448 Protein denotes BCL-2
T6729 400-403 Protein denotes FAS
T6728 388-394 Protein denotes SCOTIN
T6727 382-386 Protein denotes PUMA
T6726 377-380 Protein denotes BAX
T6725 309-312 Protein denotes p53
T6724 302-307 Protein denotes miR34
T6723 285-288 Protein denotes p21
T6722 188-191 Protein denotes p53
T6721 142-145 Protein denotes p53
T6720 10-13 Protein denotes p53
R4771 T6728 T6736 causeOf SCOTIN,inhibiting
R4772 T6729 T6736 causeOf FAS,inhibiting
R4773 T6730 T6736 themeOf BCL-2,inhibiting
R4774 T6732 T6737 causeOf p53,regulating
R4775 T6733 T6738 themeOf smooth muscle α-actin,expression
R4776 T6734 T6738 themeOf collagens IIα1,expression
R4777 T6735 T6738 themeOf VIα1,expression
R4778 T6738 T6737 themeOf expression,regulating

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7154 672-683 Regulation denotes controlling
T7153 672-683 Regulation denotes controlling
T7152 672-683 Regulation denotes controlling
T7151 672-683 Regulation denotes controlling
T7150 702-712 Regulation denotes regulating
T7149 702-712 Regulation denotes regulating
T7148 702-712 Regulation denotes regulating
T7147 702-712 Regulation denotes regulating
T7146 717-727 Gene_expression denotes expression
T7145 717-727 Gene_expression denotes expression
T7144 717-727 Gene_expression denotes expression
T7143 717-727 Gene_expression denotes expression
T7142 800-803 Protein denotes Sun
T7141 794-798 Protein denotes VIα1
T7140 775-789 Protein denotes collagens IIα1
T7139 731-752 Protein denotes smooth muscle α-actin
T7138 652-655 Protein denotes p53
T7137 474-477 Protein denotes p53
T7136 409-419 Negative_regulation denotes inhibiting
T7135 424-448 Protein denotes antiapoptotic gene BCL-2
T7134 400-403 Protein denotes FAS
T7133 293-312 Protein denotes microRNA miR34. p53
T7132 285-288 Protein denotes p21
T7131 251-274 Protein denotes cyclin-dependent kinase
T7130 188-191 Protein denotes p53
T7129 142-145 Protein denotes p53
T7128 0-9 Positive_regulation denotes Activated
T7127 10-13 Protein denotes p53
R4987 T7127 T7128 themeOf p53,Activated
R4988 T7135 T7136 themeOf antiapoptotic gene BCL-2,inhibiting
R4989 T7138 T7151 causeOf p53,controlling
R4990 T7138 T7152 causeOf p53,controlling
R4991 T7138 T7153 causeOf p53,controlling
R4992 T7138 T7154 causeOf p53,controlling
R4993 T7139 T7143 themeOf smooth muscle α-actin,expression
R4994 T7140 T7144 themeOf collagens IIα1,expression
R4995 T7141 T7145 themeOf VIα1,expression
R4996 T7142 T7146 themeOf Sun,expression
R4997 T7143 T7147 themeOf expression,regulating
R4998 T7144 T7148 themeOf expression,regulating
R4999 T7145 T7149 themeOf expression,regulating
R5000 T7146 T7150 themeOf expression,regulating
R5001 T7147 T7151 themeOf regulating,controlling
R5002 T7148 T7152 themeOf regulating,controlling
R5003 T7149 T7153 themeOf regulating,controlling
R5004 T7150 T7154 themeOf regulating,controlling

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7320 834-835 . denotes .
T7319 828-834 NNS denotes others
T7318 823-827 JJ denotes many
T7317 819-822 CC denotes and
T7316 817-818 , denotes ,
T7315 816-817 -RRB- denotes )
T7314 812-816 CD denotes 1999
T7313 810-811 , denotes ,
T7312 807-810 FW denotes al.
T7311 804-806 FW denotes et
T7310 800-803 NNP denotes Sun
T7309 799-800 -LRB- denotes (
T7298 754-759 NNP denotes Comer
T7297 753-754 -LRB- denotes (
T7296 745-752 NN denotes α-actin
T7295 738-744 NN denotes muscle
T7294 731-737 JJ denotes smooth
T7293 728-730 IN denotes of
T7292 717-727 NN denotes expression
T7291 713-716 DT denotes the
T7290 702-712 VBG denotes regulating
T7289 698-701 IN denotes via
T7288 689-697 NN denotes motility
T7287 684-688 NN denotes cell
T7286 672-683 VBG denotes controlling
T7285 669-671 IN denotes in
T7284 664-668 NN denotes role
T7283 662-663 DT denotes a
T7282 656-661 VBZ denotes plays
T7281 652-655 NN denotes p53
T7280 650-651 , denotes ,
T7279 646-650 RB denotes Also
T7278 644-645 . denotes .
T7277 643-644 -RRB- denotes )
T7276 639-643 CD denotes 2009
T7275 637-638 , denotes ,
T7274 634-637 FW denotes al.
T7273 631-633 FW denotes et
T7272 622-630 NNP denotes Menendez
T7271 621-622 -LRB- denotes (
T7270 614-620 NN denotes damage
T7269 605-613 JJ denotes cellular
T7268 602-604 IN denotes of
T7267 595-601 NN denotes extent
T7266 591-594 DT denotes the
T7265 587-590 CC denotes and
T7264 585-586 , denotes ,
T7263 579-585 NN denotes signal
T7262 572-578 NN denotes stress
T7261 568-571 DT denotes the
T7260 565-567 IN denotes of
T7259 555-564 NN denotes intensity
T7258 551-554 DT denotes the
T7257 549-550 , denotes ,
T7256 544-549 NNS denotes types
T7255 539-543 NN denotes cell
T7254 534-538 IN denotes upon
T7253 524-533 VBG denotes depending
T7252 522-523 , denotes ,
T7251 514-522 NN denotes response
T7250 508-513 NN denotes death
T7249 503-507 NN denotes cell
T7248 500-502 CC denotes or
T7247 487-499 JJ denotes pro-survival
T7246 478-486 VBZ denotes triggers
T7245 474-477 NN denotes p53
T7244 472-473 . denotes .
T7243 471-472 -RRB- denotes )
T7242 467-471 CD denotes 2010
T7241 465-466 , denotes ,
T7240 459-465 NNP denotes Levine
T7239 455-458 CC denotes and
T7238 450-454 NNP denotes Lane
T7237 449-450 -LRB- denotes (
T7236 443-448 NN denotes BCL-2
T7235 438-442 NN denotes gene
T7234 424-437 JJ denotes antiapoptotic
T7233 420-423 DT denotes the
T7232 409-419 VBG denotes inhibiting
T7231 405-408 CC denotes and
T7230 403-404 , denotes ,
T7229 400-403 NNP denotes FAS
T7228 396-399 CC denotes and
T7227 394-395 , denotes ,
T7226 388-394 NNP denotes SCOTIN
T7225 386-387 , denotes ,
T7224 382-386 NNP denotes PUMA
T7223 380-381 , denotes ,
T7222 377-380 NNP denotes BAX
T7221 374-376 IN denotes as
T7220 369-373 JJ denotes such
T7219 363-368 NNS denotes genes
T7218 350-362 JJ denotes proapoptotic
T7217 334-349 VBG denotes transactivating
T7216 331-333 IN denotes by
T7215 321-330 NN denotes apoptosis
T7214 313-320 VBZ denotes induces
T7213 309-312 NN denotes p53
T7212 307-308 . denotes .
T7211 302-307 NNP denotes miR34
T7210 293-301 NNP denotes microRNA
T7209 290-292 CC denotes or
T7208 288-289 , denotes ,
T7207 285-288 CD denotes p21
T7206 275-284 NN denotes inhibitor
T7205 268-274 NN denotes kinase
T7204 251-267 JJ denotes cyclin-dependent
T7203 248-250 IN denotes as
T7202 243-247 JJ denotes such
T7201 237-242 NNS denotes genes
T7200 221-236 VBG denotes transactivating
T7199 218-220 IN denotes by
T7198 211-217 NN denotes arrest
T7197 205-210 NN denotes cycle
T7196 200-204 NN denotes cell
T7195 192-199 VBZ denotes induces
T7194 188-191 NN denotes p53
T7193 186-187 . denotes .
T7192 185-186 -RRB- denotes )
T7191 184-185 CD denotes 2
T7190 177-183 NN denotes Figure
T7189 176-177 -LRB- denotes (
T7188 167-175 VBN denotes depicted
T7187 163-166 VBP denotes are
T7186 154-162 NNS denotes isoforms
T7185 150-153 PRP$ denotes its
T7184 146-149 CC denotes and
T7183 142-145 NN denotes p53
T7182 139-141 IN denotes of
T7181 128-138 NNS denotes structures
T7180 120-127 JJ denotes primary
T7179 116-119 DT denotes The
T7178 114-115 . denotes .
T7177 113-114 -RRB- denotes )
T7176 109-113 CD denotes 2010
T7175 107-108 , denotes ,
T7174 101-107 NNP denotes Levine
T7173 97-100 CC denotes and
T7172 92-96 NNP denotes Lane
T7171 91-92 -LRB- denotes (
T7170 80-90 NN denotes metabolism
T7169 77-79 CC denotes or
T7168 75-76 , denotes ,
T7167 69-75 NN denotes repair
T7166 65-68 NNP denotes DNA
T7165 63-64 , denotes ,
T7164 53-63 NN denotes senescence
T7163 51-52 , denotes ,
T7162 45-51 NN denotes arrest
T7161 39-44 NN denotes cycle
T7160 34-38 NN denotes cell
T7159 32-33 , denotes ,
T7158 23-32 NN denotes apoptosis
T7157 14-22 NNS denotes mediates
T7156 10-13 NN denotes p53
T7155 0-9 VBN denotes Activated
T7308 794-798 NNP denotes VIα1
T7307 790-793 CC denotes and
T7306 785-789 NNP denotes IIα1
T7305 775-784 VBZ denotes collagens
T7304 773-774 , denotes ,
T7303 772-773 -RRB- denotes )
T7302 768-772 CD denotes 1998
T7301 766-767 , denotes ,
T7300 763-766 FW denotes al.
T7299 760-762 FW denotes et
R5005 T7155 T7158 amod Activated,apoptosis
R5006 T7156 T7158 nmod p53,apoptosis
R5007 T7157 T7158 compound mediates,apoptosis
R5008 T7158 T7158 ROOT apoptosis,apoptosis
R5009 T7159 T7162 punct ",",arrest
R5010 T7160 T7161 compound cell,cycle
R5011 T7161 T7162 compound cycle,arrest
R5012 T7162 T7158 appos arrest,apoptosis
R5013 T7163 T7162 punct ",",arrest
R5014 T7164 T7162 appos senescence,arrest
R5015 T7165 T7162 punct ",",arrest
R5016 T7166 T7167 compound DNA,repair
R5017 T7167 T7162 appos repair,arrest
R5018 T7168 T7167 punct ",",repair
R5019 T7169 T7167 cc or,repair
R5020 T7170 T7167 conj metabolism,repair
R5021 T7171 T7167 punct (,repair
R5022 T7172 T7167 appos Lane,repair
R5023 T7173 T7172 cc and,Lane
R5024 T7174 T7172 conj Levine,Lane
R5025 T7175 T7174 punct ",",Levine
R5026 T7176 T7174 npadvmod 2010,Levine
R5027 T7177 T7174 punct ),Levine
R5028 T7178 T7162 punct .,arrest
R5029 T7179 T7181 det The,structures
R5030 T7180 T7181 amod primary,structures
R5031 T7181 T7188 nsubjpass structures,depicted
R5032 T7182 T7181 prep of,structures
R5033 T7183 T7182 pobj p53,of
R5034 T7184 T7183 cc and,p53
R5035 T7185 T7186 poss its,isoforms
R5036 T7186 T7188 nsubjpass isoforms,depicted
R5037 T7187 T7188 auxpass are,depicted
R5038 T7188 T7188 ROOT depicted,depicted
R5039 T7189 T7190 punct (,Figure
R5040 T7190 T7188 oprd Figure,depicted
R5041 T7191 T7190 nummod 2,Figure
R5042 T7192 T7190 punct ),Figure
R5043 T7193 T7188 punct .,depicted
R5044 T7194 T7195 nsubj p53,induces
R5045 T7195 T7195 ROOT induces,induces
R5046 T7196 T7197 compound cell,cycle
R5047 T7197 T7198 compound cycle,arrest
R5048 T7198 T7195 dobj arrest,induces
R5049 T7199 T7195 prep by,induces
R5050 T7200 T7199 pcomp transactivating,by
R5051 T7201 T7200 dobj genes,transactivating
R5052 T7202 T7203 amod such,as
R5053 T7203 T7201 prep as,genes
R5054 T7204 T7206 amod cyclin-dependent,inhibitor
R5055 T7205 T7206 compound kinase,inhibitor
R5056 T7206 T7203 pobj inhibitor,as
R5057 T7207 T7206 nummod p21,inhibitor
R5058 T7208 T7207 punct ",",p21
R5059 T7209 T7206 cc or,inhibitor
R5060 T7210 T7211 compound microRNA,miR34
R5061 T7211 T7206 conj miR34,inhibitor
R5062 T7212 T7195 punct .,induces
R5063 T7213 T7214 nsubj p53,induces
R5064 T7214 T7214 ROOT induces,induces
R5065 T7215 T7214 dobj apoptosis,induces
R5066 T7216 T7214 prep by,induces
R5067 T7217 T7216 pcomp transactivating,by
R5068 T7218 T7219 amod proapoptotic,genes
R5069 T7219 T7217 dobj genes,transactivating
R5070 T7220 T7221 amod such,as
R5071 T7221 T7219 prep as,genes
R5072 T7222 T7221 pobj BAX,as
R5073 T7223 T7222 punct ",",BAX
R5074 T7224 T7222 conj PUMA,BAX
R5075 T7225 T7224 punct ",",PUMA
R5076 T7226 T7224 conj SCOTIN,PUMA
R5077 T7227 T7226 punct ",",SCOTIN
R5078 T7228 T7226 cc and,SCOTIN
R5079 T7229 T7226 conj FAS,SCOTIN
R5080 T7230 T7229 punct ",",FAS
R5081 T7231 T7217 cc and,transactivating
R5082 T7232 T7217 conj inhibiting,transactivating
R5083 T7233 T7236 det the,BCL-2
R5084 T7234 T7235 amod antiapoptotic,gene
R5085 T7235 T7236 compound gene,BCL-2
R5086 T7236 T7232 dobj BCL-2,inhibiting
R5087 T7237 T7236 punct (,BCL-2
R5088 T7238 T7236 appos Lane,BCL-2
R5089 T7239 T7238 cc and,Lane
R5090 T7240 T7238 conj Levine,Lane
R5091 T7241 T7240 punct ",",Levine
R5092 T7242 T7240 npadvmod 2010,Levine
R5093 T7243 T7240 punct ),Levine
R5094 T7244 T7214 punct .,induces
R5095 T7245 T7246 nsubj p53,triggers
R5096 T7246 T7246 ROOT triggers,triggers
R5097 T7247 T7251 amod pro-survival,response
R5098 T7248 T7247 cc or,pro-survival
R5099 T7249 T7247 conj cell,pro-survival
R5100 T7250 T7251 compound death,response
R5101 T7251 T7246 dobj response,triggers
R5102 T7252 T7246 punct ",",triggers
R5103 T7253 T7246 advcl depending,triggers
R5104 T7254 T7253 prep upon,depending
R5105 T7255 T7256 compound cell,types
R5106 T7256 T7254 pobj types,upon
R5107 T7257 T7253 punct ",",depending
R5108 T7258 T7259 det the,intensity
R5109 T7259 T7246 dobj intensity,triggers
R5110 T7260 T7259 prep of,intensity
R5111 T7261 T7263 det the,signal
R5112 T7262 T7263 compound stress,signal
R5113 T7263 T7260 pobj signal,of
R5114 T7264 T7259 punct ",",intensity
R5115 T7265 T7259 cc and,intensity
R5116 T7266 T7267 det the,extent
R5117 T7267 T7259 conj extent,intensity
R5118 T7268 T7267 prep of,extent
R5119 T7269 T7270 amod cellular,damage
R5120 T7270 T7268 pobj damage,of
R5121 T7271 T7274 punct (,al.
R5122 T7272 T7274 compound Menendez,al.
R5123 T7273 T7274 nmod et,al.
R5124 T7274 T7267 conj al.,extent
R5125 T7275 T7274 punct ",",al.
R5126 T7276 T7274 npadvmod 2009,al.
R5127 T7277 T7274 punct ),al.
R5128 T7278 T7246 punct .,triggers
R5129 T7279 T7282 advmod Also,plays
R5130 T7280 T7282 punct ",",plays
R5131 T7281 T7282 nsubj p53,plays
R5132 T7282 T7282 ROOT plays,plays
R5133 T7283 T7284 det a,role
R5134 T7284 T7282 dobj role,plays
R5135 T7285 T7284 prep in,role
R5136 T7286 T7285 pcomp controlling,in
R5137 T7287 T7288 compound cell,motility
R5138 T7288 T7286 dobj motility,controlling
R5139 T7289 T7286 prep via,controlling
R5140 T7290 T7289 pcomp regulating,via
R5141 T7291 T7292 det the,expression
R5142 T7292 T7290 dobj expression,regulating
R5143 T7293 T7292 prep of,expression
R5144 T7294 T7296 amod smooth,α-actin
R5145 T7295 T7296 compound muscle,α-actin
R5146 T7296 T7293 pobj α-actin,of
R5147 T7297 T7300 punct (,al.
R5148 T7298 T7300 compound Comer,al.
R5149 T7299 T7300 nmod et,al.
R5150 T7300 T7292 appos al.,expression
R5151 T7301 T7300 punct ",",al.
R5166 T7316 T7312 punct ",",al.
R5167 T7317 T7312 cc and,al.
R5168 T7318 T7319 amod many,others
R5169 T7319 T7312 conj others,al.
R5170 T7320 T7282 punct .,plays
R5152 T7302 T7300 npadvmod 1998,al.
R5153 T7303 T7292 punct ),expression
R5154 T7304 T7282 punct ",",plays
R5155 T7305 T7282 conj collagens,plays
R5156 T7306 T7305 dobj IIα1,collagens
R5157 T7307 T7306 cc and,IIα1
R5158 T7308 T7306 conj VIα1,IIα1
R5159 T7309 T7312 punct (,al.
R5160 T7310 T7312 compound Sun,al.
R5161 T7311 T7312 nmod et,al.
R5162 T7312 T7308 parataxis al.,VIα1
R5163 T7313 T7312 punct ",",al.
R5164 T7314 T7312 npadvmod 1999,al.
R5165 T7315 T7312 punct ),al.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7375 409-448 Negative_regulation denotes inhibiting the antiapoptotic gene BCL-2
T7374 702-752 Regulation denotes regulating the expression of smooth muscle α-actin
T7373 0-13 Positive_regulation denotes Activated p53
T7372 334-404 Positive_regulation denotes transactivating proapoptotic genes such as BAX, PUMA, SCOTIN, and FAS,
T7371 221-288 Positive_regulation denotes transactivating genes such as cyclin-dependent kinase inhibitor p21
T7370 188-191 Protein denotes p53
T7369 237-250 Protein denotes genes such as
T7368 800-803 Protein denotes Sun
T7367 731-752 Protein denotes smooth muscle α-actin
T7366 237-288 Protein denotes genes such as cyclin-dependent kinase inhibitor p21
T7365 53-63 Protein denotes senescence
T7364 794-798 Protein denotes VIα1
T7363 309-312 Protein denotes p53
T7362 388-394 Protein denotes SCOTIN
T7361 775-789 Protein denotes collagens IIα1
T7360 420-448 Protein denotes the antiapoptotic gene BCL-2
T7359 302-307 Protein denotes miR34
T7358 420-448 Protein denotes the antiapoptotic gene BCL-2
T7357 400-403 Protein denotes FAS
T7356 142-145 Protein denotes p53
T7355 350-376 Protein denotes proapoptotic genes such as
T7354 0-13 Protein denotes Activated p53
T7353 382-386 Protein denotes PUMA
T7352 474-477 Protein denotes p53
T7351 524-549 Entity denotes depending upon cell types
T7350 350-404 Protein denotes proapoptotic genes such as BAX, PUMA, SCOTIN, and FAS,
T7349 652-655 Protein denotes p53
R5189 T7350 T7372 themeOf "proapoptotic genes such as BAX, PUMA, SCOTIN, and FAS,","transactivating proapoptotic genes such as BAX, PUMA, SCOTIN, and FAS,"
R5190 T7354 T7373 themeOf Activated p53,Activated p53
R5191 T7360 T7375 themeOf the antiapoptotic gene BCL-2,inhibiting the antiapoptotic gene BCL-2
R5192 T7366 T7371 themeOf genes such as cyclin-dependent kinase inhibitor p21,transactivating genes such as cyclin-dependent kinase inhibitor p21

DLUT931

Id Subject Object Predicate Lexical cue
T7089 702-712 Regulation denotes regulating
T7088 717-727 Gene_expression denotes expression
T7087 409-419 Negative_regulation denotes inhibiting
T7086 0-9 Positive_regulation denotes Activated
T7085 794-798 Protein denotes VIα1
T7084 775-789 Protein denotes collagens IIα1
T7083 731-752 Protein denotes smooth muscle α-actin
T7082 652-655 Protein denotes p53
T7081 474-477 Protein denotes p53
T7080 388-394 Protein denotes SCOTIN
T7079 382-386 Protein denotes PUMA
T7078 377-380 Protein denotes BAX
T7077 309-312 Protein denotes p53
T7076 302-307 Protein denotes miR34
T7075 285-288 Protein denotes p21
T7074 188-191 Protein denotes p53
T7073 443-448 Protein denotes BCL-2
T7072 400-403 Protein denotes FAS
T7071 142-145 Protein denotes p53
T7070 10-13 Protein denotes p53
R4967 T7070 T7086 themeOf p53,Activated
R4968 T7073 T7087 themeOf BCL-2,inhibiting
R4969 T7083 T7088 themeOf smooth muscle α-actin,expression
R4970 T7084 T7088 themeOf collagens IIα1,expression
R4971 T7085 T7088 themeOf VIα1,expression
R4972 T7088 T7089 themeOf expression,regulating
R4973 T7088 T7089 themeOf expression,regulating
R4974 T7088 T7089 themeOf expression,regulating

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7126 717-727 Gene_expression denotes expression
T7125 702-712 Regulation denotes regulating
T7124 409-419 Negative_regulation denotes inhibiting
T7123 0-9 Positive_regulation denotes Activated
T7122 794-798 Protein denotes VIα1
T7121 775-789 Protein denotes collagens IIα1
T7120 731-752 Protein denotes smooth muscle α-actin
T7119 652-655 Protein denotes p53
T7118 474-477 Protein denotes p53
T7117 388-394 Protein denotes SCOTIN
T7116 382-386 Protein denotes PUMA
T7115 377-380 Protein denotes BAX
T7114 309-312 Protein denotes p53
T7113 302-307 Protein denotes miR34
T7112 285-288 Protein denotes p21
T7111 188-191 Protein denotes p53
T7110 443-448 Protein denotes BCL-2
T7109 400-403 Protein denotes FAS
T7108 142-145 Protein denotes p53
T7107 10-13 Protein denotes p53
R4978 T7107 T7123 themeOf p53,Activated
R4979 T7110 T7124 themeOf BCL-2,inhibiting
R4980 T7114 T7124 causeOf p53,inhibiting
R4981 T7120 T7126 themeOf smooth muscle α-actin,expression
R4982 T7121 T7126 themeOf collagens IIα1,expression
R4983 T7122 T7126 themeOf VIα1,expression
R4984 T7126 T7125 themeOf expression,regulating
R4985 T7126 T7125 themeOf expression,regulating
R4986 T7126 T7125 themeOf expression,regulating

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7063 717-727 Gene_expression denotes expression
T7062 702-712 Regulation denotes regulating
T7061 409-419 Negative_regulation denotes inhibiting
T7060 334-349 Binding denotes transactivating
T7059 0-9 Positive_regulation denotes Activated
T7058 794-798 Protein denotes VIα1
T7057 775-789 Protein denotes collagens IIα1
T7056 731-752 Protein denotes smooth muscle α-actin
T7055 652-655 Protein denotes p53
T7054 474-477 Protein denotes p53
T7053 388-394 Protein denotes SCOTIN
T7052 382-386 Protein denotes PUMA
T7051 377-380 Protein denotes BAX
T7050 309-312 Protein denotes p53
T7049 302-307 Protein denotes miR34
T7048 285-288 Protein denotes p21
T7047 188-191 Protein denotes p53
T7046 443-448 Protein denotes BCL-2
T7045 400-403 Protein denotes FAS
T7044 142-145 Protein denotes p53
T7043 10-13 Protein denotes p53
R4955 T7043 T7059 themeOf p53,Activated
R4958 T7051 T7060 themeOf BAX,transactivating
R4960 T7053 T7060 themeOf SCOTIN,transactivating
R4956 T7045 T7060 themeOf FAS,transactivating
R4957 T7046 T7061 themeOf BCL-2,inhibiting
R4959 T7052 T7060 themeOf PUMA,transactivating
R4961 T7056 T7063 themeOf smooth muscle α-actin,expression
R4962 T7057 T7063 themeOf collagens IIα1,expression
R4963 T7058 T7063 themeOf VIα1,expression
R4964 T7063 T7062 themeOf expression,regulating
R4965 T7063 T7062 themeOf expression,regulating
R4966 T7063 T7062 themeOf expression,regulating

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7069 652-655 http://www.uniprot.org/uniprot/P04637 denotes p53
T7068 474-477 http://www.uniprot.org/uniprot/P04637 denotes p53
T7067 309-312 http://www.uniprot.org/uniprot/P04637 denotes p53
T7066 188-191 http://www.uniprot.org/uniprot/P04637 denotes p53
T7065 142-145 http://www.uniprot.org/uniprot/P04637 denotes p53
T7064 10-13 http://www.uniprot.org/uniprot/P04637 denotes p53

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T6821 794-798 Protein denotes VIα1
T6820 775-789 Protein denotes collagens IIα1
T6819 731-752 Protein denotes smooth muscle α-actin
T6818 652-655 Protein denotes p53
T6817 474-477 Protein denotes p53
T6816 443-448 Protein denotes BCL-2
T6815 400-403 Protein denotes FAS
T6814 388-394 Protein denotes SCOTIN
T6813 382-386 Protein denotes PUMA
T6812 377-380 Protein denotes BAX
T6811 309-312 Protein denotes p53
T6810 302-307 Protein denotes miR34
T6809 285-288 Protein denotes p21
T6808 188-191 Protein denotes p53
T6807 142-145 Protein denotes p53
T6806 10-13 Protein denotes p53

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6935 361-367 NN denotes c gene
T6934 360-361 -COMMA- denotes i
T6933 356-360 NN denotes ptot
T6932 355-356 -COMMA- denotes o
T6931 352-355 NN denotes oap
T6930 350-352 IN denotes pr
T6929 345-349 JJ denotes ting
T6928 340-345 NN denotes ctiva
T6927 328-340 JJ denotes is by transa
T6926 313-328 VB denotes induces apoptos
T6925 311-313 IN denotes 3
T6924 302-311 NN denotes miR34. p5
T6923 294-301 VB denotes icroRNA
T6922 291-294 NN denotes r m
T6921 285-291 NN denotes p21, o
T6920 277-285 NN denotes hibitor
T6919 275-277 CC denotes in
T6918 273-274 -COMMA- denotes e
T6917 270-273 NN denotes nas
T6916 261-270 NN denotes endent ki
T6915 255-261 NN denotes in-dep
T6914 239-255 JJ denotes nes such as cycl
T6913 237-239 IN denotes ge
T6912 233-237 JJ denotes ing
T6911 228-233 NN denotes tivat
T6910 213-228 VB denotes rest by transac
T6909 211-213 IN denotes ar
T6908 205-211 NN denotes cycle
T6907 200-205 NN denotes cell
T6906 196-200 NN denotes ces
T6905 189-196 VB denotes 53 indu
T6904 186-189 NN denotes . p
T6903 185-186 -RRB- denotes )
T6902 184-185 CD denotes 2
T6901 177-183 NN denotes Figure
T6900 176-177 -LRB- denotes (
T6899 167-175 VB denotes depicted
T6898 163-166 VB denotes are
T6897 154-162 NN denotes isoforms
T6896 150-153 PRP-DOLLAR- denotes its
T6895 146-149 CC denotes and
T6894 142-145 NN denotes p53
T6893 139-141 IN denotes of
T6892 128-138 NN denotes structures
T6891 120-127 JJ denotes primary
T6890 116-119 DT denotes The
T6889 113-114 -RRB- denotes )
T6888 109-113 CD denotes 2010
T6887 107-108 -COMMA- denotes ,
T6886 101-107 NNP denotes Levine
T6885 97-100 CC denotes and
T6884 92-96 NN denotes Lane
T6883 91-92 -LRB- denotes (
T6882 80-90 NN denotes metabolism
T6881 77-79 CC denotes or
T6880 75-76 -COMMA- denotes ,
T6879 69-75 NN denotes repair
T6878 65-68 NN denotes DNA
T6877 63-64 -COMMA- denotes ,
T6876 53-63 NN denotes senescence
T6875 51-52 -COMMA- denotes ,
T6874 45-51 NN denotes arrest
T6873 39-44 NN denotes cycle
T6872 34-38 NN denotes cell
T6871 32-33 -COMMA- denotes ,
T6870 23-32 NN denotes apoptosis
T6869 14-22 VB denotes mediates
T6868 10-13 NN denotes p53
T7026 828-834 NN denotes others
T7025 823-827 JJ denotes many
T7024 819-822 CC denotes and
T7023 817-818 -COMMA- denotes ,
T7022 816-817 -RRB- denotes )
T7021 812-816 CD denotes 1999
T7020 810-811 -COMMA- denotes ,
T7019 807-810 FW denotes al.
T7018 804-806 FW denotes et
T7017 800-803 NNP denotes Sun
T7016 799-800 -LRB- denotes (
T7015 794-798 NN denotes VIα1
T7014 790-793 CC denotes and
T7013 785-789 NN denotes IIα1
T7012 775-784 NN denotes collagens
T7011 773-774 -COMMA- denotes ,
T7010 772-773 -RRB- denotes )
T7009 768-772 CD denotes 1998
T7008 766-767 -COMMA- denotes ,
T7007 763-766 FW denotes al.
T7006 760-762 FW denotes et
T7005 754-759 NNP denotes Comer
T7004 753-754 -LRB- denotes (
T7003 745-752 NN denotes α-actin
T7002 738-744 NN denotes muscle
T7001 731-737 JJ denotes smooth
T7000 728-730 IN denotes of
T6999 717-727 NN denotes expression
T6998 713-716 DT denotes the
T6997 702-712 VB denotes regulating
T6996 698-701 IN denotes via
T6995 689-697 NN denotes motility
T6994 684-688 NN denotes cell
T6993 672-683 VB denotes controlling
T6992 669-671 IN denotes in
T6991 664-668 NN denotes role
T6990 662-663 DT denotes a
T6989 656-661 VB denotes plays
T6988 652-655 NN denotes p53
T6987 650-651 -COMMA- denotes ,
T6986 646-650 RB denotes Also
T6985 583-584 -RRB- denotes a
T6984 579-583 CD denotes sign
T6983 577-578 -COMMA- denotes s
T6982 574-577 FW denotes res
T6981 572-574 FW denotes st
T6980 563-571 NNP denotes y of the
T6979 562-563 -LRB- denotes t
T6978 556-562 NN denotes ntensi
T6977 548-556 JJ denotes s, the i
T6976 546-548 IN denotes pe
T6975 540-546 NN denotes ell ty
T6974 537-540 DT denotes n c
T6973 534-537 CC denotes upo
T6972 532-533 -COMMA- denotes g
T6971 526-532 NN denotes pendin
T6970 520-526 NN denotes se, de
T6969 517-520 DT denotes pon
T6968 515-517 IN denotes es
T6967 506-515 NN denotes l death r
T6966 503-506 DT denotes cel
T6965 501-502 -COMMA- denotes r
T6964 496-501 NN denotes val o
T6963 492-496 NN denotes urvi
T6962 488-492 IN denotes ro-s
T6961 479-488 VB denotes riggers p
T6960 478-479 -COMMA- denotes t
T6959 470-478 NN denotes 0). p53
T6958 465-470 NN denotes , 201
T6957 461-465 NN denotes vine
T6956 459-461 CC denotes Le
T6955 447-459 JJ denotes 2 (Lane and
T6954 439-447 VB denotes ene BCL-
T6953 436-439 NN denotes c g
T6952 435-436 -RRB- denotes i
T6951 431-435 CD denotes ptot
T6950 430-431 -COMMA- denotes o
T6949 424-430 NNP denotes antiap
T6948 420-423 CC denotes the
T6947 416-420 NNP denotes ing
T6946 415-416 -LRB- denotes t
T6945 410-415 NN denotes nhibi
T6944 406-410 NN denotes nd i
T6943 393-406 JJ denotes N, and FAS, a
T6942 390-393 DT denotes OTI
T6941 380-390 VB denotes , PUMA, SC
T6940 377-380 CC denotes BAX
T6939 375-376 -COMMA- denotes s
T6938 372-375 NN denotes h a
T6937 369-372 CC denotes suc
T6936 367-368 -COMMA- denotes s
T6867 0-9 VB denotes Activated
R4805 T6868 T6867 arg2Of p53,Activated
R4806 T6868 T6869 arg1Of p53,mediates
R4807 T6870 T6871 arg1Of apoptosis,","
R4808 T6871 T6875 arg1Of ",",","
R4809 T6874 T6871 arg2Of arrest,","
R4810 T6874 T6872 arg1Of arrest,cell
R4811 T6874 T6873 arg1Of arrest,cycle
R4812 T6875 T6877 arg1Of ",",","
R4813 T6876 T6875 arg2Of senescence,","
R4814 T6877 T6881 arg1Of ",",or
R4815 T6879 T6877 arg2Of repair,","
R4816 T6879 T6878 arg1Of repair,DNA
R4817 T6881 T6869 arg2Of or,mediates
R4818 T6881 T6880 arg1Of or,","
R4819 T6882 T6881 arg2Of metabolism,or
R4820 T6882 T6883 arg1Of metabolism,(
R4821 T6884 T6885 arg1Of Lane,and
R4822 T6885 T6883 arg2Of and,(
R4823 T6885 T6887 arg1Of and,","
R4824 T6886 T6885 arg2Of Levine,and
R4825 T6888 T6887 arg2Of 2010,","
R4826 T6889 T6883 arg3Of ),(
R4827 T6892 T6890 arg1Of structures,The
R4828 T6892 T6891 arg1Of structures,primary
R4829 T6892 T6893 arg1Of structures,of
R4830 T6894 T6893 arg2Of p53,of
R4831 T6897 T6896 arg1Of isoforms,its
R4832 T6897 T6898 arg1Of isoforms,are
R4833 T6897 T6899 arg2Of isoforms,depicted
R4834 T6899 T6898 arg2Of depicted,are
R4835 T6901 T6900 arg2Of Figure,(
R4836 T6901 T6902 arg1Of Figure,2
R4837 T6903 T6900 arg3Of ),(
R4838 T6904 T6899 arg3Of . p,depicted
R4839 T6904 T6900 arg1Of . p,(
R4840 T6905 T6909 arg1Of 53 indu,ar
R4841 T6908 T6905 arg2Of cycle ,53 indu
R4842 T6908 T6906 arg1Of cycle ,ces
R4843 T6908 T6907 arg1Of cycle ,cell
R4844 T6910 T6909 arg2Of rest by transac,ar
R4845 T6911 T6910 arg2Of tivat,rest by transac
R4846 T6911 T6913 arg1Of tivat,ge
R4847 T6913 T6912 arg1Of ge,ing
R4848 T6917 T6913 arg2Of nas,ge
R4849 T6917 T6914 arg1Of nas,nes such as cycl
R4850 T6917 T6915 arg1Of nas,in-dep
R4851 T6917 T6916 arg1Of nas,endent ki
R4852 T6919 T6918 arg1Of in,e
R4853 T6922 T6920 arg1Of r m,hibitor
R4854 T6922 T6921 arg1Of r m,"p21, o"
R4855 T6922 T6923 arg1Of r m,icroRNA
R4856 T6922 T6926 arg1Of r m,induces apoptos
R4857 T6922 T6941 arg1Of r m,", PUMA, SC"
R4858 T6923 T6925 arg1Of icroRNA,3
R4859 T6924 T6923 arg2Of miR34. p5,icroRNA
R4860 T6926 T6940 arg1Of induces apoptos,BAX
R4861 T6928 T6926 arg2Of ctiva,induces apoptos
R4862 T6928 T6927 arg1Of ctiva,is by transa
R4863 T6928 T6930 arg1Of ctiva,pr
R4864 T6930 T6929 arg1Of pr,ting
R4865 T6931 T6932 arg1Of oap,o
R4866 T6932 T6934 arg1Of o,i
R4867 T6933 T6932 arg2Of ptot,o
R4868 T6934 T6937 arg1Of i,suc
R4869 T6935 T6934 arg2Of c gene,i
R4870 T6937 T6930 arg2Of suc,pr
R4871 T6937 T6936 arg1Of suc,s
R4872 T6938 T6937 arg2Of h a,suc
R4873 T6940 T6925 arg2Of BAX,3
R4874 T6940 T6939 arg1Of BAX,s
R4875 T6941 T6940 arg2Of ", PUMA, SC",BAX
R4876 T6945 T6941 arg2Of nhibi,", PUMA, SC"
R4877 T6945 T6942 arg1Of nhibi,OTI
R4878 T6945 T6943 arg1Of nhibi,"N, and FAS, a"
R4879 T6945 T6944 arg1Of nhibi,nd i
R4880 T6947 T6948 arg1Of ing ,the
R4881 T6948 T6946 arg2Of the,t
R4882 T6948 T6950 arg1Of the,o
R4883 T6949 T6948 arg2Of antiap,the
R4884 T6951 T6950 arg2Of ptot,o
R4885 T6952 T6946 arg3Of i,t
R4886 T6953 T6954 arg1Of c g,ene BCL-
R4887 T6954 T6960 arg1Of ene BCL-,t
R4888 T6954 T6961 arg1Of ene BCL-,riggers p
R4889 T6959 T6954 arg2Of 0). p53 ,ene BCL-
R4890 T6959 T6955 arg1Of 0). p53 ,2 (Lane and
R4891 T6959 T6956 arg1Of 0). p53 ,Le
R4892 T6959 T6957 arg1Of 0). p53 ,vine
R4893 T6959 T6958 arg1Of 0). p53 ,", 201"
R4894 T6962 T6961 arg2Of ro-s,riggers p
R4895 T6964 T6962 arg2Of val o,ro-s
R4896 T6964 T6963 arg1Of val o,urvi
R4897 T6967 T6966 arg1Of l death r,cel
R4898 T6967 T6968 arg1Of l death r,es
R4899 T6971 T6968 arg2Of pendin,es
R4900 T6971 T6969 arg1Of pendin,pon
R4901 T6971 T6970 arg1Of pendin,"se, de"
R4902 T6973 T6972 arg1Of upo,g
R4903 T6975 T6974 arg1Of ell ty,n c
R4904 T6975 T6976 arg1Of ell ty,pe
R4905 T6978 T6976 arg2Of ntensi,pe
R4906 T6978 T6977 arg1Of ntensi,"s, the i"
R4907 T6980 T6979 arg2Of y of the,t
R4908 T6980 T6981 arg1Of y of the,st
R4909 T6980 T6982 arg1Of y of the,res
R4910 T6980 T6983 arg1Of y of the,s
R4911 T6984 T6983 arg2Of sign,s
R4912 T6985 T6979 arg3Of a,t
R4913 T6988 T6989 arg1Of p53,plays
R4914 T6988 T6993 arg1Of p53,controlling
R4915 T6989 T6986 arg1Of plays,Also
R4916 T6989 T6987 arg1Of plays,","
R4917 T6989 T6992 arg1Of plays,in
R4918 T6991 T6989 arg2Of role,plays
R4919 T6991 T6990 arg1Of role,a
R4920 T6993 T6992 arg2Of controlling,in
R4921 T6993 T6996 arg1Of controlling,via
R4922 T6995 T6993 arg2Of motility,controlling
R4923 T6995 T6994 arg1Of motility,cell
R4924 T6997 T7016 arg1Of regulating,(
R4925 T6997 T7024 arg1Of regulating,and
R4926 T6999 T6997 arg2Of expression,regulating
R4927 T6999 T6998 arg1Of expression,the
R4928 T6999 T7000 arg1Of expression,of
R4929 T7003 T7001 arg1Of α-actin,smooth
R4930 T7003 T7002 arg1Of α-actin,muscle
R4931 T7003 T7004 arg1Of α-actin,(
R4932 T7003 T7011 arg1Of α-actin,","
R4933 T7005 T7004 arg2Of Comer,(
R4934 T7005 T7006 arg1Of Comer,et
R4935 T7005 T7007 arg1Of Comer,al.
R4936 T7005 T7008 arg1Of Comer,","
R4937 T7009 T7008 arg2Of 1998,","
R4938 T7010 T7004 arg3Of ),(
R4939 T7011 T7000 arg2Of ",",of
R4940 T7013 T7014 arg1Of IIα1,and
R4941 T7014 T7011 arg2Of and,","
R4942 T7014 T7012 arg1Of and,collagens
R4943 T7015 T7014 arg2Of VIα1,and
R4944 T7017 T7016 arg2Of Sun,(
R4945 T7017 T7018 arg1Of Sun,et
R4946 T7017 T7019 arg1Of Sun,al.
R4947 T7017 T7020 arg1Of Sun,","
R4948 T7021 T7020 arg2Of 1999,","
R4949 T7022 T7016 arg3Of ),(
R4950 T7024 T6996 arg2Of and,via
R4951 T7024 T7023 arg1Of and,","
R4952 T7026 T7024 arg2Of others,and
R4953 T7026 T7025 arg1Of others,many

2_test

Id Subject Object Predicate Lexical cue
23459853-20463001-38778571 109-113 20463001 denotes 2010
23459853-20463001-38778572 467-471 20463001 denotes 2010
23459853-19776742-38778573 639-643 19776742 denotes 2009
23459853-9546431-38778574 768-772 9546431 denotes 1998
23459853-10206959-38778575 812-816 10206959 denotes 1999

GO-BP

Id Subject Object Predicate Lexical cue
T6844 684-697 http://purl.obolibrary.org/obo/GO_0048870 denotes cell motility
T6843 605-613 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular
T6842 579-585 http://purl.obolibrary.org/obo/GO_0023052 denotes signal
T6841 508-513 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T6840 503-522 http://purl.obolibrary.org/obo/GO_0036474 denotes cell death response
T6839 503-513 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T6838 487-499 http://purl.obolibrary.org/obo/GO_0043066 denotes pro-survival
T6837 268-284 http://purl.obolibrary.org/obo/GO_0033673 denotes kinase inhibitor
T6836 251-257 http://purl.obolibrary.org/obo/GO_0016538 denotes cyclin
T6835 80-90 http://purl.obolibrary.org/obo/GO_0008152 denotes metabolism
T6834 65-75 http://purl.obolibrary.org/obo/GO_0006281 denotes DNA repair
T6833 200-217 http://purl.obolibrary.org/obo/GO_0007050 denotes cell cycle arrest
T6832 34-51 http://purl.obolibrary.org/obo/GO_0007050 denotes cell cycle arrest
T6831 200-217 http://purl.obolibrary.org/obo/GO_0071850 denotes cell cycle arrest
T6830 34-51 http://purl.obolibrary.org/obo/GO_0071850 denotes cell cycle arrest
T6829 200-217 http://purl.obolibrary.org/obo/GO_0071156 denotes cell cycle arrest
T6828 34-51 http://purl.obolibrary.org/obo/GO_0071156 denotes cell cycle arrest
T6827 200-210 http://purl.obolibrary.org/obo/GO_0007049 denotes cell cycle
T6826 34-44 http://purl.obolibrary.org/obo/GO_0007049 denotes cell cycle
T6825 321-330 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T6824 23-32 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T6823 321-330 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T6822 23-32 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis

GO-MF

Id Subject Object Predicate Lexical cue
T6845 251-257 http://purl.obolibrary.org/obo/GO_0016538 denotes cyclin

GO-CC

Id Subject Object Predicate Lexical cue
T6850 684-688 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T6849 539-543 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T6848 503-507 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T6847 200-204 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T6846 34-38 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T6775 646-835 Sentence denotes Also, p53 plays a role in controlling cell motility via regulating the expression of smooth muscle α-actin (Comer et al., 1998), collagens IIα1 and VIα1 (Sun et al., 1999), and many others.
T6774 116-645 Sentence denotes The primary structures of p53 and its isoforms are depicted (Figure 2). p53 induces cell cycle arrest by transactivating genes such as cyclin-dependent kinase inhibitor p21, or microRNA miR34. p53 induces apoptosis by transactivating proapoptotic genes such as BAX, PUMA, SCOTIN, and FAS, and inhibiting the antiapoptotic gene BCL-2 (Lane and Levine, 2010). p53 triggers pro-survival or cell death response, depending upon cell types, the intensity of the stress signal, and the extent of cellular damage (Menendez et al., 2009).
T6773 0-115 Sentence denotes Activated p53 mediates apoptosis, cell cycle arrest, senescence, DNA repair, or metabolism (Lane and Levine, 2010).
T91 0-115 Sentence denotes Activated p53 mediates apoptosis, cell cycle arrest, senescence, DNA repair, or metabolism (Lane and Levine, 2010).
T92 116-645 Sentence denotes The primary structures of p53 and its isoforms are depicted (Figure 2). p53 induces cell cycle arrest by transactivating genes such as cyclin-dependent kinase inhibitor p21, or microRNA miR34. p53 induces apoptosis by transactivating proapoptotic genes such as BAX, PUMA, SCOTIN, and FAS, and inhibiting the antiapoptotic gene BCL-2 (Lane and Levine, 2010). p53 triggers pro-survival or cell death response, depending upon cell types, the intensity of the stress signal, and the extent of cellular damage (Menendez et al., 2009).
T93 646-835 Sentence denotes Also, p53 plays a role in controlling cell motility via regulating the expression of smooth muscle α-actin (Comer et al., 1998), collagens IIα1 and VIα1 (Sun et al., 1999), and many others.

simple1

Id Subject Object Predicate Lexical cue
T6866 794-798 Protein denotes VIα1
T6865 775-789 Protein denotes collagens IIα1
T6864 731-752 Protein denotes smooth muscle α-actin
T6863 652-655 Protein denotes p53
T6862 474-477 Protein denotes p53
T6861 443-448 Protein denotes BCL-2
T6860 400-403 Protein denotes FAS
T6859 388-394 Protein denotes SCOTIN
T6858 382-386 Protein denotes PUMA
T6857 377-380 Protein denotes BAX
T6856 309-312 Protein denotes p53
T6855 302-307 Protein denotes miR34
T6854 285-288 Protein denotes p21
T6853 188-191 Protein denotes p53
T6852 142-145 Protein denotes p53
T6851 10-13 Protein denotes p53