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PMC:3585731 / 920-1029 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T27 90-100 Gene_expression denotes production
T19 104-108 Protein denotes TNFα
T18 53-57 Protein denotes RIP1
R3 T19 T27 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T302 104-108 NN denotes TNFα
T301 101-103 IN denotes of
T300 90-100 NN denotes production
T299 80-89 JJ denotes autocrine
T298 76-79 CC denotes and
T297 65-75 NN denotes activation
T296 61-64 NN denotes JNK
T295 58-60 TO denotes to
T294 53-57 NN denotes RIP1
T293 47-52 VB denotes links
T292 45-46 -COMMA- denotes ,
T291 39-45 NN denotes mTORC1
T290 31-38 IN denotes through
T289 26-30 NN denotes part
T288 23-25 IN denotes in
T287 14-22 VB denotes mediated
T286 12-13 -COMMA- denotes ,
T285 4-12 NN denotes activity
T284 0-3 NN denotes Akt
R144 T285 T284 arg1Of activity,Akt
R145 T285 T286 arg1Of activity,","
R146 T285 T287 arg2Of activity,mediated
R147 T285 T293 arg1Of activity,links
R148 T287 T288 arg1Of mediated,in
R149 T287 T290 arg1Of mediated,through
R150 T289 T288 arg2Of part,in
R151 T291 T290 arg2Of mTORC1,through
R152 T293 T292 arg1Of links,","
R153 T294 T293 arg2Of RIP1,links
R154 T294 T295 arg1Of RIP1,to
R155 T297 T296 arg1Of activation,JNK
R156 T297 T298 arg1Of activation,and
R157 T298 T295 arg2Of and,to
R158 T300 T298 arg2Of production,and
R159 T300 T299 arg1Of production,autocrine
R160 T300 T301 arg1Of production,of
R161 T302 T301 arg2Of TNFα,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T95 53-57 Protein denotes RIP1
T96 104-108 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T409 53-57 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T403 104-108 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T398 0-3 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T391 0-3 http://www.uniprot.org/uniprot/P31751 denotes Akt
T384 0-3 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T133 61-64 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-MF

Id Subject Object Predicate Lexical cue
T136 61-64 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T142 39-45 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1

sentences

Id Subject Object Predicate Lexical cue
T67 0-109 Sentence denotes Akt activity, mediated in part through mTORC1, links RIP1 to JNK activation and autocrine production of TNFα.
T10 0-109 Sentence denotes Akt activity, mediated in part through mTORC1, links RIP1 to JNK activation and autocrine production of TNFα.

simple1

Id Subject Object Predicate Lexical cue
T150 53-57 Protein denotes RIP1
T151 104-108 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T360 53-57 Protein denotes RIP1
T361 104-108 Protein denotes TNFα
T368 47-52 Positive_regulation denotes links
R453 T360 T368 themeOf RIP1,links

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T448 53-57 Protein denotes RIP1
T449 104-108 Protein denotes TNFα

DLUT931

Id Subject Object Predicate Lexical cue
T417 53-57 Protein denotes RIP1
T418 104-108 Protein denotes TNFα

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T763 39-108 Binding denotes mTORC1, links RIP1 to JNK activation and autocrine production of TNFα
T762 61-75 Positive_regulation denotes JNK activation
T761 80-108 Gene_expression denotes autocrine production of TNFα
T756 101-108 Protein denotes of TNFα
T752 53-57 Protein denotes RIP1
T751 39-45 Entity denotes mTORC1
T750 0-3 Protein denotes Akt
T740 61-64 Protein denotes JNK
R434 T740 T762 themeOf JNK,JNK activation
R437 T751 T763 themeOf mTORC1,"mTORC1, links RIP1 to JNK activation and autocrine production of TNFα"
R438 T752 T763 themeOf RIP1,"mTORC1, links RIP1 to JNK activation and autocrine production of TNFα"
R439 T756 T761 themeOf of TNFα,autocrine production of TNFα

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T643 108-109 . denotes .
T642 104-108 NNP denotes TNFα
T641 101-103 IN denotes of
T640 90-100 NN denotes production
T639 80-89 NN denotes autocrine
T638 76-79 CC denotes and
T637 65-75 NN denotes activation
T636 61-64 NNP denotes JNK
T635 58-60 TO denotes to
T634 53-57 VBP denotes RIP1
T633 47-52 NNS denotes links
T632 45-46 , denotes ,
T631 39-45 NNP denotes mTORC1
T630 31-38 IN denotes through
T629 26-30 NN denotes part
T628 23-25 IN denotes in
T627 14-22 VBN denotes mediated
T626 12-13 , denotes ,
T625 4-12 NN denotes activity
T624 0-3 JJ denotes Akt
R364 T624 T625 amod Akt,activity
R365 T625 T625 ROOT activity,activity
R366 T626 T625 punct ",",activity
R367 T627 T625 acl mediated,activity
R368 T628 T627 prep in,mediated
R369 T629 T628 pobj part,in
R370 T630 T627 prep through,mediated
R371 T631 T630 pobj mTORC1,through
R372 T632 T634 punct ",",RIP1
R373 T633 T634 nsubj links,RIP1
R374 T634 T625 conj RIP1,activity
R375 T635 T634 prep to,RIP1
R376 T636 T637 compound JNK,activation
R377 T637 T640 nmod activation,production
R378 T638 T637 cc and,activation
R379 T639 T637 conj autocrine,activation
R380 T640 T635 pobj production,to
R381 T641 T640 prep of,production
R382 T642 T641 pobj TNFα,of
R383 T643 T634 punct .,RIP1

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T481 65-75 Positive_regulation denotes activation
T480 65-75 Positive_regulation denotes activation
T479 104-108 Protein denotes TNFα
T478 61-64 Protein denotes JNK
T477 53-57 Protein denotes RIP1
T476 0-3 Protein denotes Akt
R222 T478 T480 themeOf JNK,activation
R223 T479 T481 themeOf TNFα,activation

test3

Id Subject Object Predicate Lexical cue
T55 104-108 Protein denotes TNFα
T54 90-100 Gene_expression denotes production
T53 53-57 Protein denotes RIP1
T37 104-108 Protein denotes TNFα
T36 53-57 Protein denotes RIP1
R13 T55 T54 themeOf TNFα,production