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PMC:3585731 / 885-1041 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T27 125-135 Gene_expression denotes production
T19 139-143 Protein denotes TNFα
T18 88-92 Protein denotes RIP1
R3 T19 T27 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T304 148-153 JJ denotes other
T303 145-147 IN denotes In
T302 139-143 NN denotes TNFα
T301 136-138 IN denotes of
T300 125-135 NN denotes production
T299 115-124 JJ denotes autocrine
T298 111-114 CC denotes and
T297 100-110 NN denotes activation
T296 96-99 NN denotes JNK
T295 93-95 TO denotes to
T294 88-92 NN denotes RIP1
T293 82-87 VB denotes links
T292 80-81 -COMMA- denotes ,
T291 74-80 NN denotes mTORC1
T290 66-73 IN denotes through
T289 61-65 NN denotes part
T288 58-60 IN denotes in
T287 49-57 VB denotes mediated
T286 47-48 -COMMA- denotes ,
T285 39-47 NN denotes activity
T284 35-38 NN denotes Akt
T283 32-33 -RRB- denotes )
T282 26-32 NN denotes mTORC1
T281 25-26 -LRB- denotes (
T280 23-24 CD denotes 1
T279 15-22 NN denotes complex
T278 5-14 NN denotes Rapamycin
T277 2-4 IN denotes of
R138 T279 T277 arg2Of complex,of
R139 T279 T278 arg1Of complex,Rapamycin
R140 T279 T280 arg1Of complex,1
R141 T279 T281 arg1Of complex,(
R142 T282 T281 arg2Of mTORC1,(
R143 T283 T281 arg3Of ),(
R144 T285 T284 arg1Of activity,Akt
R145 T285 T286 arg1Of activity,","
R146 T285 T287 arg2Of activity,mediated
R147 T285 T293 arg1Of activity,links
R148 T287 T288 arg1Of mediated,in
R149 T287 T290 arg1Of mediated,through
R150 T289 T288 arg2Of part,in
R151 T291 T290 arg2Of mTORC1,through
R152 T293 T292 arg1Of links,","
R153 T294 T293 arg2Of RIP1,links
R154 T294 T295 arg1Of RIP1,to
R155 T297 T296 arg1Of activation,JNK
R156 T297 T298 arg1Of activation,and
R157 T298 T295 arg2Of and,to
R158 T300 T298 arg2Of production,and
R159 T300 T299 arg1Of production,autocrine
R160 T300 T301 arg1Of production,of
R161 T302 T301 arg2Of TNFα,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T95 88-92 Protein denotes RIP1
T96 139-143 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T409 88-92 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T403 139-143 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T398 35-38 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T391 35-38 http://www.uniprot.org/uniprot/P31751 denotes Akt
T384 35-38 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T133 96-99 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-MF

Id Subject Object Predicate Lexical cue
T136 96-99 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T142 74-80 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1
T141 26-32 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1

sentences

Id Subject Object Predicate Lexical cue
T67 35-144 Sentence denotes Akt activity, mediated in part through mTORC1, links RIP1 to JNK activation and autocrine production of TNFα.
T10 35-144 Sentence denotes Akt activity, mediated in part through mTORC1, links RIP1 to JNK activation and autocrine production of TNFα.

simple1

Id Subject Object Predicate Lexical cue
T150 88-92 Protein denotes RIP1
T151 139-143 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T360 88-92 Protein denotes RIP1
T361 139-143 Protein denotes TNFα
T368 82-87 Positive_regulation denotes links
R453 T360 T368 themeOf RIP1,links

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T448 88-92 Protein denotes RIP1
T449 139-143 Protein denotes TNFα

DLUT931

Id Subject Object Predicate Lexical cue
T417 88-92 Protein denotes RIP1
T418 139-143 Protein denotes TNFα

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T763 74-143 Binding denotes mTORC1, links RIP1 to JNK activation and autocrine production of TNFα
T762 96-110 Positive_regulation denotes JNK activation
T761 115-143 Gene_expression denotes autocrine production of TNFα
T756 136-143 Protein denotes of TNFα
T752 88-92 Protein denotes RIP1
T751 74-80 Entity denotes mTORC1
T750 35-38 Protein denotes Akt
T740 96-99 Protein denotes JNK
T738 26-32 Entity denotes mTORC1
T730 15-33 Entity denotes complex 1 (mTORC1)
R434 T740 T762 themeOf JNK,JNK activation
R437 T751 T763 themeOf mTORC1,"mTORC1, links RIP1 to JNK activation and autocrine production of TNFα"
R438 T752 T763 themeOf RIP1,"mTORC1, links RIP1 to JNK activation and autocrine production of TNFα"
R439 T756 T761 themeOf of TNFα,autocrine production of TNFα

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T645 148-153 JJ denotes other
T644 145-147 IN denotes In
T643 143-144 . denotes .
T642 139-143 NNP denotes TNFα
T641 136-138 IN denotes of
T640 125-135 NN denotes production
T639 115-124 NN denotes autocrine
T638 111-114 CC denotes and
T637 100-110 NN denotes activation
T636 96-99 NNP denotes JNK
T635 93-95 TO denotes to
T634 88-92 VBP denotes RIP1
T633 82-87 NNS denotes links
T632 80-81 , denotes ,
T631 74-80 NNP denotes mTORC1
T630 66-73 IN denotes through
T629 61-65 NN denotes part
T628 58-60 IN denotes in
T627 49-57 VBN denotes mediated
T626 47-48 , denotes ,
T625 39-47 NN denotes activity
T624 35-38 JJ denotes Akt
T623 33-34 . denotes .
T622 32-33 -RRB- denotes )
T621 26-32 NN denotes mTORC1
T620 25-26 -LRB- denotes (
T619 23-24 CD denotes 1
T618 15-22 JJ denotes complex
T617 5-14 NNP denotes Rapamycin
T616 2-4 IN denotes of
R357 T617 T616 pobj Rapamycin,of
R358 T618 T621 nmod complex,mTORC1
R359 T619 T618 nummod 1,complex
R360 T620 T621 punct (,mTORC1
R362 T622 T621 punct ),mTORC1
R364 T624 T625 amod Akt,activity
R365 T625 T625 ROOT activity,activity
R366 T626 T625 punct ",",activity
R367 T627 T625 acl mediated,activity
R368 T628 T627 prep in,mediated
R369 T629 T628 pobj part,in
R370 T630 T627 prep through,mediated
R371 T631 T630 pobj mTORC1,through
R372 T632 T634 punct ",",RIP1
R373 T633 T634 nsubj links,RIP1
R374 T634 T625 conj RIP1,activity
R375 T635 T634 prep to,RIP1
R376 T636 T637 compound JNK,activation
R377 T637 T640 nmod activation,production
R378 T638 T637 cc and,activation
R379 T639 T637 conj autocrine,activation
R380 T640 T635 pobj production,to
R381 T641 T640 prep of,production
R382 T642 T641 pobj TNFα,of
R383 T643 T634 punct .,RIP1

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T481 100-110 Positive_regulation denotes activation
T480 100-110 Positive_regulation denotes activation
T479 139-143 Protein denotes TNFα
T478 96-99 Protein denotes JNK
T477 88-92 Protein denotes RIP1
T476 35-38 Protein denotes Akt
R222 T478 T480 themeOf JNK,activation
R223 T479 T481 themeOf TNFα,activation

test3

Id Subject Object Predicate Lexical cue
T55 139-143 Protein denotes TNFα
T54 125-135 Gene_expression denotes production
T53 88-92 Protein denotes RIP1
T37 139-143 Protein denotes TNFα
T36 88-92 Protein denotes RIP1
R13 T55 T54 themeOf TNFα,production