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PMC:3585731 / 876-1206 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T28 278-288 Gene_expression denotes production
T27 134-144 Gene_expression denotes production
T20 273-277 Protein denotes TNFα
T19 148-152 Protein denotes TNFα
T18 97-101 Protein denotes RIP1
R3 T19 T27 themeOf TNFα,production
R4 T20 T28 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T327 318-323 NN denotes death
T326 313-317 NN denotes cell
T325 310-312 TO denotes to
T324 297-309 VB denotes contributing
T323 289-296 IN denotes without
T322 278-288 NN denotes production
T321 273-277 NN denotes TNFα
T320 250-272 JJ denotes necroptosis-associated
T319 245-249 IN denotes over
T318 237-244 NN denotes control
T317 227-236 VB denotes exhibited
T316 223-226 NN denotes Akt
T315 221-222 -COMMA- denotes ,
T314 210-221 NN denotes macrophages
T313 206-209 CC denotes and
T312 194-205 NN denotes fibroblasts
T311 189-193 NN denotes lung
T310 183-188 NN denotes mouse
T309 180-182 IN denotes as
T308 175-179 JJ denotes such
T307 173-174 -COMMA- denotes ,
T306 168-173 NN denotes types
T305 163-167 NN denotes cell
T304 157-162 JJ denotes other
T303 154-156 IN denotes In
T302 148-152 NN denotes TNFα
T301 145-147 IN denotes of
T300 134-144 NN denotes production
T299 124-133 JJ denotes autocrine
T298 120-123 CC denotes and
T297 109-119 NN denotes activation
T296 105-108 NN denotes JNK
T295 102-104 TO denotes to
T294 97-101 NN denotes RIP1
T293 91-96 VB denotes links
T292 89-90 -COMMA- denotes ,
T291 83-89 NN denotes mTORC1
T290 75-82 IN denotes through
T289 70-74 NN denotes part
T288 67-69 IN denotes in
T287 58-66 VB denotes mediated
T286 56-57 -COMMA- denotes ,
T285 48-56 NN denotes activity
T284 44-47 NN denotes Akt
T283 41-42 -RRB- denotes )
T282 35-41 NN denotes mTORC1
T281 34-35 -LRB- denotes (
T280 32-33 CD denotes 1
T279 24-31 NN denotes complex
T278 14-23 NN denotes Rapamycin
T277 11-13 IN denotes of
T276 4-10 NN denotes Target
R137 T276 T277 arg1Of Target,of
R138 T279 T277 arg2Of complex,of
R139 T279 T278 arg1Of complex,Rapamycin
R140 T279 T280 arg1Of complex,1
R141 T279 T281 arg1Of complex,(
R142 T282 T281 arg2Of mTORC1,(
R143 T283 T281 arg3Of ),(
R144 T285 T284 arg1Of activity,Akt
R145 T285 T286 arg1Of activity,","
R146 T285 T287 arg2Of activity,mediated
R147 T285 T293 arg1Of activity,links
R148 T287 T288 arg1Of mediated,in
R149 T287 T290 arg1Of mediated,through
R150 T289 T288 arg2Of part,in
R151 T291 T290 arg2Of mTORC1,through
R152 T293 T292 arg1Of links,","
R153 T294 T293 arg2Of RIP1,links
R154 T294 T295 arg1Of RIP1,to
R155 T297 T296 arg1Of activation,JNK
R156 T297 T298 arg1Of activation,and
R157 T298 T295 arg2Of and,to
R158 T300 T298 arg2Of production,and
R159 T300 T299 arg1Of production,autocrine
R160 T300 T301 arg1Of production,of
R161 T302 T301 arg2Of TNFα,of
R162 T306 T303 arg2Of types,In
R163 T306 T304 arg1Of types,other
R164 T306 T305 arg1Of types,cell
R165 T306 T307 arg1Of types,","
R166 T306 T309 arg1Of types,as
R167 T309 T308 arg1Of as,such
R168 T312 T310 arg1Of fibroblasts,mouse
R169 T312 T311 arg1Of fibroblasts,lung
R170 T312 T313 arg1Of fibroblasts,and
R171 T313 T309 arg2Of and,as
R172 T314 T313 arg2Of macrophages,and
R173 T316 T317 arg1Of Akt,exhibited
R174 T316 T324 arg1Of Akt,contributing
R175 T317 T303 arg1Of exhibited,In
R176 T317 T315 arg1Of exhibited,","
R177 T317 T319 arg1Of exhibited,over
R178 T317 T323 arg1Of exhibited,without
R179 T318 T317 arg2Of control,exhibited
R180 T322 T319 arg2Of production,over
R181 T322 T320 arg1Of production,necroptosis-associated
R182 T322 T321 arg1Of production,TNFα
R183 T324 T323 arg2Of contributing,without
R184 T324 T325 arg1Of contributing,to
R185 T327 T325 arg2Of death,to
R186 T327 T326 arg1Of death,cell

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T95 97-101 Protein denotes RIP1
T96 148-152 Protein denotes TNFα
T97 273-277 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T409 97-101 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T404 273-277 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T403 148-152 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T399 223-226 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T398 44-47 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T392 223-226 http://www.uniprot.org/uniprot/P31751 denotes Akt
T391 44-47 http://www.uniprot.org/uniprot/P31751 denotes Akt
T384 44-47 http://www.uniprot.org/uniprot/P31749 denotes Akt
T385 223-226 http://www.uniprot.org/uniprot/P31749 denotes Akt

UBERON-AE

Id Subject Object Predicate Lexical cue
T59 189-193 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung

GO-BP

Id Subject Object Predicate Lexical cue
T133 105-108 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T122 318-323 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T119 313-323 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T113 250-261 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T105 250-261 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T136 105-108 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T142 83-89 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1
T141 35-41 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1
T139 313-317 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T138 163-167 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T67 44-153 Sentence denotes Akt activity, mediated in part through mTORC1, links RIP1 to JNK activation and autocrine production of TNFα.
T68 154-324 Sentence denotes In other cell types, such as mouse lung fibroblasts and macrophages, Akt exhibited control over necroptosis-associated TNFα production without contributing to cell death.
T10 44-153 Sentence denotes Akt activity, mediated in part through mTORC1, links RIP1 to JNK activation and autocrine production of TNFα.
T11 154-324 Sentence denotes In other cell types, such as mouse lung fibroblasts and macrophages, Akt exhibited control over necroptosis-associated TNFα production without contributing to cell death.

simple1

Id Subject Object Predicate Lexical cue
T150 97-101 Protein denotes RIP1
T151 148-152 Protein denotes TNFα
T152 273-277 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T360 97-101 Protein denotes RIP1
T361 148-152 Protein denotes TNFα
T362 273-277 Protein denotes TNFα
T368 91-96 Positive_regulation denotes links
T369 278-288 Gene_expression denotes production
R453 T360 T368 themeOf RIP1,links
R454 T362 T369 themeOf TNFα,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T448 97-101 Protein denotes RIP1
T449 148-152 Protein denotes TNFα
T450 273-277 Protein denotes TNFα
T455 278-288 Gene_expression denotes production
R472 T450 T455 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T427 250-272 Positive_regulation denotes necroptosis-associated
T426 278-288 Gene_expression denotes production
T417 97-101 Protein denotes RIP1
T418 148-152 Protein denotes TNFα
T419 273-277 Protein denotes TNFα
R211 T426 T427 themeOf production,necroptosis-associated
R461 T419 T426 themeOf TNFα,production

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T763 83-152 Binding denotes mTORC1, links RIP1 to JNK activation and autocrine production of TNFα
T762 105-119 Positive_regulation denotes JNK activation
T761 124-152 Gene_expression denotes autocrine production of TNFα
T759 250-288 Gene_expression denotes necroptosis-associated TNFα production
T756 145-152 Protein denotes of TNFα
T755 210-222 Entity denotes macrophages,
T752 97-101 Protein denotes RIP1
T751 83-89 Entity denotes mTORC1
T750 44-47 Protein denotes Akt
T749 223-226 Protein denotes Akt
T747 273-277 Protein denotes TNFα
T740 105-108 Protein denotes JNK
T739 157-205 Entity denotes other cell types, such as mouse lung fibroblasts
T738 35-41 Entity denotes mTORC1
T731 157-182 Entity denotes other cell types, such as
T730 24-42 Entity denotes complex 1 (mTORC1)
R434 T740 T762 themeOf JNK,JNK activation
R436 T747 T759 themeOf TNFα,necroptosis-associated TNFα production
R437 T751 T763 themeOf mTORC1,"mTORC1, links RIP1 to JNK activation and autocrine production of TNFα"
R438 T752 T763 themeOf RIP1,"mTORC1, links RIP1 to JNK activation and autocrine production of TNFα"
R439 T756 T761 themeOf of TNFα,autocrine production of TNFα

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T669 323-324 . denotes .
T668 318-323 NN denotes death
T667 313-317 NN denotes cell
T666 310-312 TO denotes to
T665 297-309 VBG denotes contributing
T664 289-296 IN denotes without
T663 278-288 NN denotes production
T662 273-277 JJ denotes TNFα
T661 250-272 JJ denotes necroptosis-associated
T660 245-249 IN denotes over
T659 237-244 NN denotes control
T658 227-236 VBD denotes exhibited
T657 223-226 NNP denotes Akt
T656 221-222 , denotes ,
T655 210-221 NNS denotes macrophages
T654 206-209 CC denotes and
T653 194-205 NNS denotes fibroblasts
T652 189-193 NN denotes lung
T651 183-188 NN denotes mouse
T650 180-182 IN denotes as
T649 175-179 JJ denotes such
T648 173-174 , denotes ,
T647 168-173 NNS denotes types
T646 163-167 NN denotes cell
T645 157-162 JJ denotes other
T644 154-156 IN denotes In
T643 152-153 . denotes .
T642 148-152 NNP denotes TNFα
T641 145-147 IN denotes of
T640 134-144 NN denotes production
T639 124-133 NN denotes autocrine
T638 120-123 CC denotes and
T637 109-119 NN denotes activation
T636 105-108 NNP denotes JNK
T635 102-104 TO denotes to
T634 97-101 VBP denotes RIP1
T633 91-96 NNS denotes links
T632 89-90 , denotes ,
T631 83-89 NNP denotes mTORC1
T630 75-82 IN denotes through
T629 70-74 NN denotes part
T628 67-69 IN denotes in
T627 58-66 VBN denotes mediated
T626 56-57 , denotes ,
T625 48-56 NN denotes activity
T624 44-47 JJ denotes Akt
T623 42-43 . denotes .
T622 41-42 -RRB- denotes )
T621 35-41 NN denotes mTORC1
T620 34-35 -LRB- denotes (
T619 32-33 CD denotes 1
T618 24-31 JJ denotes complex
T617 14-23 NNP denotes Rapamycin
T616 11-13 IN denotes of
T615 4-10 NNP denotes Target
R356 T616 T615 prep of,Target
R357 T617 T616 pobj Rapamycin,of
R358 T618 T621 nmod complex,mTORC1
R359 T619 T618 nummod 1,complex
R360 T620 T621 punct (,mTORC1
R362 T622 T621 punct ),mTORC1
R364 T624 T625 amod Akt,activity
R365 T625 T625 ROOT activity,activity
R366 T626 T625 punct ",",activity
R367 T627 T625 acl mediated,activity
R368 T628 T627 prep in,mediated
R369 T629 T628 pobj part,in
R370 T630 T627 prep through,mediated
R371 T631 T630 pobj mTORC1,through
R372 T632 T634 punct ",",RIP1
R373 T633 T634 nsubj links,RIP1
R374 T634 T625 conj RIP1,activity
R375 T635 T634 prep to,RIP1
R376 T636 T637 compound JNK,activation
R377 T637 T640 nmod activation,production
R378 T638 T637 cc and,activation
R379 T639 T637 conj autocrine,activation
R380 T640 T635 pobj production,to
R381 T641 T640 prep of,production
R382 T642 T641 pobj TNFα,of
R383 T643 T634 punct .,RIP1
R384 T644 T658 prep In,exhibited
R385 T645 T647 amod other,types
R386 T646 T647 compound cell,types
R387 T647 T644 pobj types,In
R388 T648 T647 punct ",",types
R389 T649 T650 amod such,as
R390 T650 T647 prep as,types
R391 T651 T653 compound mouse,fibroblasts
R392 T652 T653 compound lung,fibroblasts
R393 T653 T650 pobj fibroblasts,as
R394 T654 T653 cc and,fibroblasts
R395 T655 T653 conj macrophages,fibroblasts
R396 T656 T658 punct ",",exhibited
R397 T657 T658 nsubj Akt,exhibited
R398 T658 T658 ROOT exhibited,exhibited
R399 T659 T658 dobj control,exhibited
R400 T660 T659 prep over,control
R401 T661 T663 amod necroptosis-associated,production
R402 T662 T663 compound TNFα,production
R403 T663 T660 pobj production,over
R404 T664 T658 prep without,exhibited
R405 T665 T664 pcomp contributing,without
R406 T666 T665 prep to,contributing
R407 T667 T668 compound cell,death
R408 T668 T666 pobj death,to
R409 T669 T658 punct .,exhibited

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T484 237-244 Regulation denotes control
T483 278-288 Gene_expression denotes production
T482 273-277 Protein denotes TNFα
T481 109-119 Positive_regulation denotes activation
T480 109-119 Positive_regulation denotes activation
T479 148-152 Protein denotes TNFα
T478 105-108 Protein denotes JNK
T477 97-101 Protein denotes RIP1
T476 44-47 Protein denotes Akt
R222 T478 T480 themeOf JNK,activation
R223 T479 T481 themeOf TNFα,activation
R224 T482 T483 themeOf TNFα,production
R225 T483 T484 themeOf production,control

test3

Id Subject Object Predicate Lexical cue
T57 278-288 Gene_expression denotes production
T56 273-277 Protein denotes TNFα
T55 148-152 Protein denotes TNFα
T54 134-144 Gene_expression denotes production
T53 97-101 Protein denotes RIP1
T38 273-277 Protein denotes TNFα
T37 148-152 Protein denotes TNFα
T36 97-101 Protein denotes RIP1
R13 T55 T54 themeOf TNFα,production
R14 T56 T57 themeOf TNFα,production