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PMC:3585731 / 766-1229 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T28 388-398 Gene_expression denotes production
T27 244-254 Gene_expression denotes production
T20 383-387 Protein denotes TNFα
T19 258-262 Protein denotes TNFα
T18 207-211 Protein denotes RIP1
T17 41-45 Protein denotes RIP1
R3 T19 T27 themeOf TNFα,production
R4 T20 T28 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T332 456-463 VB denotes provide
T331 448-455 NN denotes results
T330 444-447 PRP-DOLLAR- denotes our
T329 442-443 -COMMA- denotes ,
T328 435-442 RB denotes Overall
T327 428-433 NN denotes death
T326 423-427 NN denotes cell
T325 420-422 TO denotes to
T324 407-419 VB denotes contributing
T323 399-406 IN denotes without
T322 388-398 NN denotes production
T321 383-387 NN denotes TNFα
T320 360-382 JJ denotes necroptosis-associated
T319 355-359 IN denotes over
T318 347-354 NN denotes control
T317 337-346 VB denotes exhibited
T316 333-336 NN denotes Akt
T315 331-332 -COMMA- denotes ,
T314 320-331 NN denotes macrophages
T313 316-319 CC denotes and
T312 304-315 NN denotes fibroblasts
T311 299-303 NN denotes lung
T310 293-298 NN denotes mouse
T309 290-292 IN denotes as
T308 285-289 JJ denotes such
T307 283-284 -COMMA- denotes ,
T306 278-283 NN denotes types
T305 273-277 NN denotes cell
T304 267-272 JJ denotes other
T303 264-266 IN denotes In
T302 258-262 NN denotes TNFα
T301 255-257 IN denotes of
T300 244-254 NN denotes production
T299 234-243 JJ denotes autocrine
T298 230-233 CC denotes and
T297 219-229 NN denotes activation
T296 215-218 NN denotes JNK
T295 212-214 TO denotes to
T294 207-211 NN denotes RIP1
T293 201-206 VB denotes links
T292 199-200 -COMMA- denotes ,
T291 193-199 NN denotes mTORC1
T290 185-192 IN denotes through
T289 180-184 NN denotes part
T288 177-179 IN denotes in
T287 168-176 VB denotes mediated
T286 166-167 -COMMA- denotes ,
T285 158-166 NN denotes activity
T284 154-157 NN denotes Akt
T283 151-152 -RRB- denotes )
T282 145-151 NN denotes mTORC1
T281 144-145 -LRB- denotes (
T280 142-143 CD denotes 1
T279 134-141 NN denotes complex
T278 124-133 NN denotes Rapamycin
T277 121-123 IN denotes of
T276 114-120 NN denotes Target
T275 104-113 JJ denotes mammalian
T274 101-103 IN denotes of
T273 91-100 NN denotes targeting
T272 80-90 JJ denotes downstream
T271 72-79 IN denotes through
T270 60-71 NN denotes necroptosis
T269 51-59 VB denotes controls
T268 47-50 NN denotes Akt
T267 41-45 NN denotes RIP1
T266 37-40 CC denotes and
T265 29-36 NN denotes factors
T264 22-28 NN denotes growth
T263 17-21 DT denotes both
T262 12-16 IN denotes from
T261 5-11 NN denotes inputs
R123 T261 T262 arg1Of inputs,from
R124 T265 T264 arg1Of factors,growth
R125 T265 T266 arg1Of factors,and
R126 T266 T262 arg2Of and,from
R127 T266 T263 arg1Of and,both
R128 T267 T266 arg2Of RIP1,and
R129 T268 T269 arg1Of Akt,controls
R130 T269 T271 arg1Of controls,through
R131 T270 T269 arg2Of necroptosis,controls
R132 T273 T271 arg2Of targeting,through
R133 T273 T272 arg1Of targeting,downstream
R134 T273 T274 arg1Of targeting,of
R135 T276 T274 arg2Of Target,of
R136 T276 T275 arg1Of Target,mammalian
R137 T276 T277 arg1Of Target,of
R138 T279 T277 arg2Of complex,of
R139 T279 T278 arg1Of complex,Rapamycin
R140 T279 T280 arg1Of complex,1
R141 T279 T281 arg1Of complex,(
R142 T282 T281 arg2Of mTORC1,(
R143 T283 T281 arg3Of ),(
R144 T285 T284 arg1Of activity,Akt
R145 T285 T286 arg1Of activity,","
R146 T285 T287 arg2Of activity,mediated
R147 T285 T293 arg1Of activity,links
R148 T287 T288 arg1Of mediated,in
R149 T287 T290 arg1Of mediated,through
R150 T289 T288 arg2Of part,in
R151 T291 T290 arg2Of mTORC1,through
R152 T293 T292 arg1Of links,","
R153 T294 T293 arg2Of RIP1,links
R154 T294 T295 arg1Of RIP1,to
R155 T297 T296 arg1Of activation,JNK
R156 T297 T298 arg1Of activation,and
R157 T298 T295 arg2Of and,to
R158 T300 T298 arg2Of production,and
R159 T300 T299 arg1Of production,autocrine
R160 T300 T301 arg1Of production,of
R161 T302 T301 arg2Of TNFα,of
R162 T306 T303 arg2Of types,In
R163 T306 T304 arg1Of types,other
R164 T306 T305 arg1Of types,cell
R165 T306 T307 arg1Of types,","
R166 T306 T309 arg1Of types,as
R167 T309 T308 arg1Of as,such
R168 T312 T310 arg1Of fibroblasts,mouse
R169 T312 T311 arg1Of fibroblasts,lung
R170 T312 T313 arg1Of fibroblasts,and
R171 T313 T309 arg2Of and,as
R172 T314 T313 arg2Of macrophages,and
R173 T316 T317 arg1Of Akt,exhibited
R174 T316 T324 arg1Of Akt,contributing
R175 T317 T303 arg1Of exhibited,In
R176 T317 T315 arg1Of exhibited,","
R177 T317 T319 arg1Of exhibited,over
R178 T317 T323 arg1Of exhibited,without
R179 T318 T317 arg2Of control,exhibited
R180 T322 T319 arg2Of production,over
R181 T322 T320 arg1Of production,necroptosis-associated
R182 T322 T321 arg1Of production,TNFα
R183 T324 T323 arg2Of contributing,without
R184 T324 T325 arg1Of contributing,to
R185 T327 T325 arg2Of death,to
R186 T327 T326 arg1Of death,cell
R187 T331 T330 arg1Of results,our
R188 T331 T332 arg1Of results,provide
R189 T332 T328 arg1Of provide,Overall
R190 T332 T329 arg1Of provide,","

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T94 41-45 Protein denotes RIP1
T95 207-211 Protein denotes RIP1
T96 258-262 Protein denotes TNFα
T97 383-387 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T409 207-211 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T408 41-45 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T404 383-387 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T403 258-262 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T399 333-336 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T398 154-157 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T397 47-50 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T392 333-336 http://www.uniprot.org/uniprot/P31751 denotes Akt
T391 154-157 http://www.uniprot.org/uniprot/P31751 denotes Akt
T390 47-50 http://www.uniprot.org/uniprot/P31751 denotes Akt
T383 47-50 http://www.uniprot.org/uniprot/P31749 denotes Akt
T384 154-157 http://www.uniprot.org/uniprot/P31749 denotes Akt
T385 333-336 http://www.uniprot.org/uniprot/P31749 denotes Akt

UBERON-AE

Id Subject Object Predicate Lexical cue
T59 299-303 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung

GO-BP

Id Subject Object Predicate Lexical cue
T133 215-218 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T132 22-28 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T122 428-433 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T119 423-433 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T113 360-371 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T112 60-71 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T105 360-371 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T104 60-71 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T136 215-218 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T142 193-199 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1
T141 145-151 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1
T139 423-427 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T138 273-277 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T66 47-153 Sentence denotes Akt controls necroptosis through downstream targeting of mammalian Target of Rapamycin complex 1 (mTORC1).
T67 154-263 Sentence denotes Akt activity, mediated in part through mTORC1, links RIP1 to JNK activation and autocrine production of TNFα.
T68 264-434 Sentence denotes In other cell types, such as mouse lung fibroblasts and macrophages, Akt exhibited control over necroptosis-associated TNFα production without contributing to cell death.
T9 47-153 Sentence denotes Akt controls necroptosis through downstream targeting of mammalian Target of Rapamycin complex 1 (mTORC1).
T10 154-263 Sentence denotes Akt activity, mediated in part through mTORC1, links RIP1 to JNK activation and autocrine production of TNFα.
T11 264-434 Sentence denotes In other cell types, such as mouse lung fibroblasts and macrophages, Akt exhibited control over necroptosis-associated TNFα production without contributing to cell death.

simple1

Id Subject Object Predicate Lexical cue
T149 41-45 Protein denotes RIP1
T150 207-211 Protein denotes RIP1
T151 258-262 Protein denotes TNFα
T152 383-387 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T359 41-45 Protein denotes RIP1
T360 207-211 Protein denotes RIP1
T361 258-262 Protein denotes TNFα
T362 383-387 Protein denotes TNFα
T368 201-206 Positive_regulation denotes links
T369 388-398 Gene_expression denotes production
R453 T360 T368 themeOf RIP1,links
R454 T362 T369 themeOf TNFα,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T447 41-45 Protein denotes RIP1
T448 207-211 Protein denotes RIP1
T449 258-262 Protein denotes TNFα
T450 383-387 Protein denotes TNFα
T455 388-398 Gene_expression denotes production
R472 T450 T455 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T427 360-382 Positive_regulation denotes necroptosis-associated
T426 388-398 Gene_expression denotes production
T416 41-45 Protein denotes RIP1
T417 207-211 Protein denotes RIP1
T418 258-262 Protein denotes TNFα
T419 383-387 Protein denotes TNFα
R211 T426 T427 themeOf production,necroptosis-associated
R461 T419 T426 themeOf TNFα,production

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T763 193-262 Binding denotes mTORC1, links RIP1 to JNK activation and autocrine production of TNFα
T762 215-229 Positive_regulation denotes JNK activation
T761 234-262 Gene_expression denotes autocrine production of TNFα
T759 360-398 Gene_expression denotes necroptosis-associated TNFα production
T756 255-262 Protein denotes of TNFα
T755 320-332 Entity denotes macrophages,
T752 207-211 Protein denotes RIP1
T751 193-199 Entity denotes mTORC1
T750 154-157 Protein denotes Akt
T749 333-336 Protein denotes Akt
T747 383-387 Protein denotes TNFα
T740 215-218 Protein denotes JNK
T739 267-315 Entity denotes other cell types, such as mouse lung fibroblasts
T738 145-151 Entity denotes mTORC1
T735 104-133 Protein denotes mammalian Target of Rapamycin
T733 47-50 Protein denotes Akt
T732 41-45 Protein denotes RIP1
T731 267-292 Entity denotes other cell types, such as
T730 134-152 Entity denotes complex 1 (mTORC1)
R434 T740 T762 themeOf JNK,JNK activation
R436 T747 T759 themeOf TNFα,necroptosis-associated TNFα production
R437 T751 T763 themeOf mTORC1,"mTORC1, links RIP1 to JNK activation and autocrine production of TNFα"
R438 T752 T763 themeOf RIP1,"mTORC1, links RIP1 to JNK activation and autocrine production of TNFα"
R439 T756 T761 themeOf of TNFα,autocrine production of TNFα

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T674 456-463 VB denotes provide
T673 448-455 NNS denotes results
T672 444-447 PRP$ denotes our
T671 442-443 , denotes ,
T670 435-442 RB denotes Overall
T669 433-434 . denotes .
T668 428-433 NN denotes death
T667 423-427 NN denotes cell
T666 420-422 TO denotes to
T665 407-419 VBG denotes contributing
T664 399-406 IN denotes without
T663 388-398 NN denotes production
T662 383-387 JJ denotes TNFα
T661 360-382 JJ denotes necroptosis-associated
T660 355-359 IN denotes over
T659 347-354 NN denotes control
T658 337-346 VBD denotes exhibited
T657 333-336 NNP denotes Akt
T656 331-332 , denotes ,
T655 320-331 NNS denotes macrophages
T654 316-319 CC denotes and
T653 304-315 NNS denotes fibroblasts
T652 299-303 NN denotes lung
T651 293-298 NN denotes mouse
T650 290-292 IN denotes as
T649 285-289 JJ denotes such
T648 283-284 , denotes ,
T647 278-283 NNS denotes types
T646 273-277 NN denotes cell
T645 267-272 JJ denotes other
T644 264-266 IN denotes In
T643 262-263 . denotes .
T642 258-262 NNP denotes TNFα
T641 255-257 IN denotes of
T640 244-254 NN denotes production
T639 234-243 NN denotes autocrine
T638 230-233 CC denotes and
T637 219-229 NN denotes activation
T636 215-218 NNP denotes JNK
T635 212-214 TO denotes to
T634 207-211 VBP denotes RIP1
T633 201-206 NNS denotes links
T632 199-200 , denotes ,
T631 193-199 NNP denotes mTORC1
T630 185-192 IN denotes through
T629 180-184 NN denotes part
T628 177-179 IN denotes in
T627 168-176 VBN denotes mediated
T626 166-167 , denotes ,
T625 158-166 NN denotes activity
T624 154-157 JJ denotes Akt
T623 152-153 . denotes .
T622 151-152 -RRB- denotes )
T621 145-151 NN denotes mTORC1
T620 144-145 -LRB- denotes (
T619 142-143 CD denotes 1
T618 134-141 JJ denotes complex
T617 124-133 NNP denotes Rapamycin
T616 121-123 IN denotes of
T615 114-120 NNP denotes Target
T614 104-113 JJ denotes mammalian
T613 101-103 IN denotes of
T612 91-100 VBG denotes targeting
T611 80-90 JJ denotes downstream
T610 72-79 IN denotes through
T609 60-71 NN denotes necroptosis
T608 51-59 VBZ denotes controls
T607 47-50 NNP denotes Akt
T606 45-46 . denotes .
T605 41-45 NNP denotes RIP1
T604 37-40 CC denotes and
T603 29-36 NNS denotes factors
T602 22-28 NN denotes growth
T601 17-21 DT denotes both
T600 12-16 IN denotes from
T599 5-11 NNS denotes inputs
R340 T600 T599 prep from,inputs
R341 T601 T603 det both,factors
R342 T602 T603 compound growth,factors
R343 T603 T600 pobj factors,from
R344 T604 T603 cc and,factors
R345 T605 T603 conj RIP1,factors
R347 T607 T608 nsubj Akt,controls
R348 T608 T608 ROOT controls,controls
R349 T609 T608 dobj necroptosis,controls
R350 T610 T608 prep through,controls
R351 T611 T612 amod downstream,targeting
R352 T612 T610 pobj targeting,through
R353 T613 T612 prep of,targeting
R354 T614 T615 amod mammalian,Target
R355 T615 T613 pobj Target,of
R356 T616 T615 prep of,Target
R357 T617 T616 pobj Rapamycin,of
R358 T618 T621 nmod complex,mTORC1
R359 T619 T618 nummod 1,complex
R360 T620 T621 punct (,mTORC1
R361 T621 T612 conj mTORC1,targeting
R362 T622 T621 punct ),mTORC1
R363 T623 T608 punct .,controls
R364 T624 T625 amod Akt,activity
R365 T625 T625 ROOT activity,activity
R366 T626 T625 punct ",",activity
R367 T627 T625 acl mediated,activity
R368 T628 T627 prep in,mediated
R369 T629 T628 pobj part,in
R370 T630 T627 prep through,mediated
R371 T631 T630 pobj mTORC1,through
R372 T632 T634 punct ",",RIP1
R373 T633 T634 nsubj links,RIP1
R374 T634 T625 conj RIP1,activity
R375 T635 T634 prep to,RIP1
R376 T636 T637 compound JNK,activation
R377 T637 T640 nmod activation,production
R378 T638 T637 cc and,activation
R379 T639 T637 conj autocrine,activation
R380 T640 T635 pobj production,to
R381 T641 T640 prep of,production
R382 T642 T641 pobj TNFα,of
R383 T643 T634 punct .,RIP1
R384 T644 T658 prep In,exhibited
R385 T645 T647 amod other,types
R386 T646 T647 compound cell,types
R387 T647 T644 pobj types,In
R388 T648 T647 punct ",",types
R389 T649 T650 amod such,as
R390 T650 T647 prep as,types
R391 T651 T653 compound mouse,fibroblasts
R392 T652 T653 compound lung,fibroblasts
R393 T653 T650 pobj fibroblasts,as
R394 T654 T653 cc and,fibroblasts
R395 T655 T653 conj macrophages,fibroblasts
R396 T656 T658 punct ",",exhibited
R397 T657 T658 nsubj Akt,exhibited
R398 T658 T658 ROOT exhibited,exhibited
R399 T659 T658 dobj control,exhibited
R400 T660 T659 prep over,control
R401 T661 T663 amod necroptosis-associated,production
R402 T662 T663 compound TNFα,production
R403 T663 T660 pobj production,over
R404 T664 T658 prep without,exhibited
R405 T665 T664 pcomp contributing,without
R406 T666 T665 prep to,contributing
R407 T667 T668 compound cell,death
R408 T668 T666 pobj death,to
R409 T669 T658 punct .,exhibited
R410 T670 T674 advmod Overall,provide
R411 T671 T674 punct ",",provide
R412 T672 T673 poss our,results
R413 T673 T674 nsubj results,provide
R414 T674 T674 ROOT provide,provide

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T484 347-354 Regulation denotes control
T483 388-398 Gene_expression denotes production
T482 383-387 Protein denotes TNFα
T481 219-229 Positive_regulation denotes activation
T480 219-229 Positive_regulation denotes activation
T479 258-262 Protein denotes TNFα
T478 215-218 Protein denotes JNK
T477 207-211 Protein denotes RIP1
T476 154-157 Protein denotes Akt
T475 41-45 Protein denotes RIP1
R222 T478 T480 themeOf JNK,activation
R223 T479 T481 themeOf TNFα,activation
R224 T482 T483 themeOf TNFα,production
R225 T483 T484 themeOf production,control

test3

Id Subject Object Predicate Lexical cue
T57 388-398 Gene_expression denotes production
T56 383-387 Protein denotes TNFα
T55 258-262 Protein denotes TNFα
T54 244-254 Gene_expression denotes production
T53 207-211 Protein denotes RIP1
T52 41-45 Protein denotes RIP1
T38 383-387 Protein denotes TNFα
T37 258-262 Protein denotes TNFα
T36 207-211 Protein denotes RIP1
T35 41-45 Protein denotes RIP1
R13 T55 T54 themeOf TNFα,production
R14 T56 T57 themeOf TNFα,production