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PMC:3585731 / 7129-7332 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T2872 149-153 Protein denotes TNFα
T2871 13-17 Protein denotes TNFα

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3583 197-202 NN denotes cells
T3582 192-196 NN denotes L929
T3581 189-191 IN denotes in
T3580 183-188 NN denotes death
T3579 171-182 JJ denotes necroptotic
T3578 167-170 IN denotes for
T3577 158-166 VB denotes required
T3576 154-157 VB denotes are
T3575 149-153 NN denotes TNFα
T3574 146-148 CC denotes or
T3573 137-145 NN denotes zVAD.fmk
T3572 133-136 CC denotes and
T3571 125-132 NN denotes factors
T3570 118-124 NN denotes growth
T3569 111-117 CC denotes either
T3568 106-110 IN denotes that
T3567 95-105 VB denotes suggesting
T3566 93-94 -COMMA- denotes ,
T3565 92-93 -RRB- denotes )
T3564 90-92 NN denotes 1A
T3563 85-89 NN denotes Fig.
T3562 84-85 -LRB- denotes (
T3561 78-83 NN denotes serum
T3560 75-77 IN denotes of
T3559 67-74 NN denotes absence
T3558 63-66 DT denotes the
T3557 60-62 IN denotes in
T3556 48-59 RB denotes efficiently
T3555 40-47 RB denotes equally
T3554 28-39 NN denotes necroptosis
T3553 18-27 VB denotes triggered
T3552 13-17 NN denotes TNFα
T3551 11-12 -COMMA- denotes ,
T3550 3-11 NN denotes contrast
T3549 0-2 IN denotes In
R2353 T3550 T3549 arg2Of contrast,In
R2354 T3552 T3553 arg1Of TNFα,triggered
R2355 T3553 T3549 arg1Of triggered,In
R2356 T3553 T3551 arg1Of triggered,","
R2357 T3553 T3556 arg1Of triggered,efficiently
R2358 T3553 T3557 arg1Of triggered,in
R2359 T3553 T3566 arg1Of triggered,","
R2360 T3553 T3567 modOf triggered,suggesting
R2361 T3554 T3553 arg2Of necroptosis,triggered
R2362 T3556 T3555 arg1Of efficiently,equally
R2363 T3559 T3557 arg2Of absence,in
R2364 T3559 T3558 arg1Of absence,the
R2365 T3559 T3560 arg1Of absence,of
R2366 T3561 T3560 arg2Of serum,of
R2367 T3561 T3562 arg1Of serum,(
R2368 T3564 T3562 arg2Of 1A,(
R2369 T3564 T3563 arg1Of 1A,Fig.
R2370 T3565 T3562 arg3Of ),(
R2371 T3571 T3570 arg1Of factors,growth
R2372 T3571 T3572 arg1Of factors,and
R2373 T3572 T3569 arg1Of and,either
R2374 T3572 T3576 arg1Of and,are
R2375 T3572 T3577 arg2Of and,required
R2376 T3573 T3574 arg1Of zVAD.fmk,or
R2377 T3574 T3572 arg2Of or,and
R2378 T3575 T3574 arg2Of TNFα,or
R2379 T3577 T3567 arg2Of required,suggesting
R2380 T3577 T3568 arg1Of required,that
R2381 T3577 T3576 arg2Of required,are
R2382 T3577 T3578 arg1Of required,for
R2383 T3580 T3578 arg2Of death,for
R2384 T3580 T3579 arg1Of death,necroptotic
R2385 T3580 T3581 arg1Of death,in
R2386 T3583 T3581 arg2Of cells,in
R2387 T3583 T3582 arg1Of cells,L929

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T3054 149-153 Protein denotes TNFα
T3053 13-17 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3954 13-17 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T3955 149-153 http://www.uniprot.org/uniprot/P01375 denotes TNFα

UBERON-AE

Id Subject Object Predicate Lexical cue
T2961 78-83 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

GO-BP

Id Subject Object Predicate Lexical cue
T3129 183-188 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T3107 28-39 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T3087 28-39 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T3073 118-124 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

GO-CC

Id Subject Object Predicate Lexical cue
T3168 197-202 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T2981 0-203 Sentence denotes In contrast, TNFα triggered necroptosis equally efficiently in the absence of serum (Fig. 1A), suggesting that either growth factors and zVAD.fmk or TNFα are required for necroptotic death in L929 cells.
T46 0-203 Sentence denotes In contrast, TNFα triggered necroptosis equally efficiently in the absence of serum (Fig. 1A), suggesting that either growth factors and zVAD.fmk or TNFα are required for necroptotic death in L929 cells.

simple1

Id Subject Object Predicate Lexical cue
T3186 149-153 Protein denotes TNFα
T3185 13-17 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T3932 149-153 Protein denotes TNFα
T3931 13-17 Protein denotes TNFα

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T4063 149-153 Protein denotes TNFα
T4062 13-17 Protein denotes TNFα

DLUT931

Id Subject Object Predicate Lexical cue
T4007 67-74 Negative_regulation denotes absence
T3989 149-153 Protein denotes TNFα
T3988 13-17 Protein denotes TNFα
R2731 T3988 T4007 themeOf TNFα,absence

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4923 13-17 Protein denotes TNFα
T4917 137-145 Entity denotes zVAD.fmk
T4938 149-153 Protein denotes TNFα

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4514 202-203 . denotes .
T4513 197-202 NNS denotes cells
T4512 192-196 CD denotes L929
T4511 189-191 IN denotes in
T4510 183-188 NN denotes death
T4509 171-182 JJ denotes necroptotic
T4508 167-170 IN denotes for
T4507 158-166 VBN denotes required
T4506 154-157 VBP denotes are
T4505 149-153 NNP denotes TNFα
T4504 146-148 CC denotes or
T4503 137-145 NNP denotes zVAD.fmk
T4502 133-136 CC denotes and
T4501 125-132 NNS denotes factors
T4500 118-124 NN denotes growth
T4499 111-117 CC denotes either
T4498 106-110 IN denotes that
T4497 95-105 VBG denotes suggesting
T4496 93-94 , denotes ,
T4495 92-93 -RRB- denotes )
T4494 90-92 NNP denotes 1A
T4493 85-89 NNP denotes Fig.
T4492 84-85 -LRB- denotes (
T4491 78-83 NN denotes serum
T4490 75-77 IN denotes of
T4489 67-74 NN denotes absence
T4488 63-66 DT denotes the
T4487 60-62 IN denotes in
T4486 48-59 RB denotes efficiently
T4485 40-47 RB denotes equally
T4484 28-39 NN denotes necroptosis
T4483 18-27 VBD denotes triggered
T4482 13-17 NNP denotes TNFα
T4481 11-12 , denotes ,
T4480 3-11 NN denotes contrast
T4479 0-2 IN denotes In
R3023 T4489 T4487 pobj absence,in
R3026 T4490 T4489 prep of,absence
R3029 T4491 T4490 pobj serum,of
R3033 T4492 T4491 punct (,serum
R3036 T4493 T4494 compound Fig.,1A
R3040 T4494 T4491 appos 1A,serum
R3044 T4495 T4491 punct ),serum
R3051 T4496 T4483 punct ",",triggered
R3055 T4497 T4483 advcl suggesting,triggered
R3058 T4498 T4507 mark that,required
R3062 T4499 T4501 preconj either,factors
R3066 T4500 T4501 compound growth,factors
R3071 T4501 T4507 nsubjpass factors,required
R3075 T4502 T4501 cc and,factors
R3078 T4503 T4501 conj zVAD.fmk,factors
R3083 T4504 T4503 cc or,zVAD.fmk
R3087 T4505 T4503 conj TNFα,zVAD.fmk
R3090 T4506 T4507 auxpass are,required
R3094 T4507 T4497 ccomp required,suggesting
R3102 T4508 T4507 prep for,required
R3105 T4509 T4510 amod necroptotic,death
R3109 T4510 T4508 pobj death,for
R3113 T4511 T4510 prep in,death
R3118 T4512 T4513 nummod L929,cells
R3121 T4513 T4511 pobj cells,in
R3124 T4479 T4483 prep In,triggered
R3125 T4514 T4483 punct .,triggered
R3126 T4480 T4479 pobj contrast,In
R3128 T4481 T4483 punct ",",triggered
R3130 T4482 T4483 nsubj TNFα,triggered
R3131 T4483 T4483 ROOT triggered,triggered
R3133 T4484 T4483 dobj necroptosis,triggered
R3134 T4485 T4486 advmod equally,efficiently
R3135 T4486 T4483 advmod efficiently,triggered
R3137 T4487 T4483 prep in,triggered
R3138 T4488 T4489 det the,absence

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T4109 149-153 Protein denotes TNFα
T4108 137-145 Protein denotes zVAD.fmk
T4107 13-17 Protein denotes TNFα

test3

Id Subject Object Predicate Lexical cue
T2909 149-153 Protein denotes TNFα
T2908 13-17 Protein denotes TNFα
T2939 149-153 Protein denotes TNFα
T2938 13-17 Protein denotes TNFα