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PMC:3585731 / 57304-57674 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T28276 297-312 Phosphorylation denotes Phosphorylation
T28275 123-130 Protein denotes Myr-Akt

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T28361 365-369 NN denotes blot
T28360 357-364 JJ denotes western
T28359 354-356 IN denotes by
T28358 343-353 VB denotes visualized
T28357 339-342 VB denotes was
T28356 331-338 NN denotes protein
T28355 324-330 NN denotes fusion
T28354 320-323 NN denotes GSK
T28353 316-319 DT denotes the
T28352 313-315 IN denotes of
T28351 297-312 NN denotes Phosphorylation
T28350 286-295 NN denotes substrate
T28349 278-285 NN denotes protein
T28348 271-277 NN denotes fusion
T28347 267-270 NN denotes GSK
T28346 265-266 DT denotes a
T28345 262-264 IN denotes of
T28344 253-261 NN denotes presence
T28343 249-252 DT denotes the
T28342 246-248 IN denotes in
T28341 236-245 VB denotes performed
T28340 232-235 VB denotes was
T28339 226-231 NN denotes assay
T28338 220-225 FW denotes vitro
T28337 217-219 FW denotes in
T28336 213-216 DT denotes The
T28335 210-211 -RRB- denotes )
T28334 205-210 NNP denotes Sigma
T28333 204-205 -LRB- denotes (
T28332 198-203 NN denotes beads
T28331 189-197 JJ denotes magnetic
T28330 186-188 NN denotes M2
T28329 176-185 JJ denotes anti-FLAG
T28328 170-175 VB denotes using
T28327 164-169 NN denotes cells
T28326 159-163 NN denotes L929
T28325 154-158 IN denotes from
T28324 135-153 VB denotes immunoprecipitated
T28323 131-134 VB denotes was
T28322 123-130 NN denotes Myr-Akt
T28321 121-122 -COMMA- denotes ,
T28320 116-121 NN denotes brief
T28319 113-115 IN denotes In
T28318 101-112 NNP denotes Technology.
T28317 91-100 NNP denotes Signaling
T28316 86-90 NNP denotes Cell
T28315 81-85 IN denotes from
T28314 79-80 -RRB- denotes )
T28313 65-79 JJ denotes nonradioactive
T28312 64-65 -LRB- denotes (
T28311 60-63 NN denotes kit
T28310 54-59 NN denotes assay
T28309 47-53 NN denotes kinase
T28308 43-46 NN denotes Akt
T28307 39-42 DT denotes the
T28306 33-38 VB denotes using
T28305 24-32 VB denotes measured
T28304 20-23 VB denotes was
T28303 11-19 NN denotes activity
T28302 4-10 NN denotes kinase
T28301 0-3 NN denotes Akt
R19616 T28303 T28301 arg1Of activity,Akt
R19617 T28303 T28302 arg1Of activity,kinase
R19618 T28303 T28304 arg1Of activity,was
R19619 T28303 T28305 arg2Of activity,measured
R19620 T28305 T28304 arg2Of measured,was
R19621 T28306 T28305 arg3Of using,measured
R19622 T28311 T28306 arg2Of kit,using
R19623 T28311 T28307 arg1Of kit,the
R19624 T28311 T28308 arg1Of kit,Akt
R19625 T28311 T28309 arg1Of kit,kinase
R19626 T28311 T28310 arg1Of kit,assay
R19627 T28311 T28312 arg1Of kit,(
R19628 T28311 T28315 arg1Of kit,from
R19629 T28313 T28312 arg2Of nonradioactive,(
R19630 T28314 T28312 arg3Of ),(
R19631 T28318 T28315 arg2Of Technology.,from
R19632 T28318 T28316 arg1Of Technology.,Cell
R19633 T28318 T28317 arg1Of Technology.,Signaling
R19634 T28318 T28319 arg1Of Technology.,In
R19635 T28320 T28319 arg2Of brief,In
R19636 T28322 T28323 arg1Of Myr-Akt,was
R19637 T28322 T28324 arg2Of Myr-Akt,immunoprecipitated
R19638 T28324 T28304 modOf immunoprecipitated,was
R19639 T28324 T28321 arg1Of immunoprecipitated,","
R19640 T28324 T28323 arg2Of immunoprecipitated,was
R19641 T28324 T28325 arg1Of immunoprecipitated,from
R19642 T28327 T28325 arg2Of cells,from
R19643 T28327 T28326 arg1Of cells,L929
R19644 T28327 T28328 arg1Of cells,using
R19645 T28332 T28328 arg2Of beads,using
R19646 T28332 T28329 arg1Of beads,anti-FLAG
R19647 T28332 T28330 arg1Of beads,M2
R19648 T28332 T28331 arg1Of beads,magnetic
R19649 T28332 T28333 arg1Of beads,(
R19650 T28334 T28333 arg2Of Sigma,(
R19651 T28335 T28333 arg3Of ),(
R19652 T28338 T28337 arg1Of vitro,in
R19653 T28339 T28336 arg1Of assay,The
R19654 T28339 T28338 arg1Of assay,vitro
R19655 T28339 T28340 arg1Of assay,was
R19656 T28339 T28341 arg2Of assay,performed
R19657 T28341 T28340 arg2Of performed,was
R19658 T28341 T28342 arg1Of performed,in
R19659 T28344 T28342 arg2Of presence,in
R19660 T28344 T28343 arg1Of presence,the
R19661 T28344 T28345 arg1Of presence,of
R19662 T28350 T28345 arg2Of substrate,of
R19663 T28350 T28346 arg1Of substrate,a
R19664 T28350 T28347 arg1Of substrate,GSK
R19665 T28350 T28348 arg1Of substrate,fusion
R19666 T28350 T28349 arg1Of substrate,protein
R19667 T28351 T28352 arg1Of Phosphorylation,of
R19668 T28351 T28357 arg1Of Phosphorylation,was
R19669 T28351 T28358 arg2Of Phosphorylation,visualized
R19670 T28356 T28352 arg2Of protein,of
R19671 T28356 T28353 arg1Of protein,the
R19672 T28356 T28354 arg1Of protein,GSK
R19673 T28356 T28355 arg1Of protein,fusion
R19674 T28358 T28357 arg2Of visualized,was
R19675 T28361 T28358 arg1Of blot,visualized
R19676 T28361 T28359 arg2Of blot,by
R19677 T28361 T28360 arg1Of blot,western

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T28284 123-130 Protein denotes Myr-Akt

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T28375 127-130 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T28374 43-46 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T28373 0-3 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T28371 127-130 http://www.uniprot.org/uniprot/P31751 denotes Akt
T28370 43-46 http://www.uniprot.org/uniprot/P31751 denotes Akt
T28369 0-3 http://www.uniprot.org/uniprot/P31751 denotes Akt
T28367 127-130 http://www.uniprot.org/uniprot/P31749 denotes Akt
T28366 43-46 http://www.uniprot.org/uniprot/P31749 denotes Akt
T28365 0-3 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T28288 297-312 http://purl.obolibrary.org/obo/GO_0016310 denotes Phosphorylation
T28287 320-323 http://purl.obolibrary.org/obo/GO_0050321 denotes GSK
T28286 267-270 http://purl.obolibrary.org/obo/GO_0050321 denotes GSK
T28285 4-19 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

GO-MF

Id Subject Object Predicate Lexical cue
T28291 320-323 http://purl.obolibrary.org/obo/GO_0050321 denotes GSK
T28290 267-270 http://purl.obolibrary.org/obo/GO_0050321 denotes GSK
T28289 4-19 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

GO-CC

Id Subject Object Predicate Lexical cue
T28293 164-169 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T28292 86-90 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell

sentences

Id Subject Object Predicate Lexical cue
T28282 297-370 Sentence denotes Phosphorylation of the GSK fusion protein was visualized by western blot.
T28281 213-296 Sentence denotes The in vitro assay was performed in the presence of a GSK fusion protein substrate.
T28280 0-212 Sentence denotes Akt kinase activity was measured using the Akt kinase assay kit (nonradioactive) from Cell Signaling Technology. In brief, Myr-Akt was immunoprecipitated from L929 cells using anti-FLAG M2 magnetic beads (Sigma).
T376 0-112 Sentence denotes Akt kinase activity was measured using the Akt kinase assay kit (nonradioactive) from Cell Signaling Technology.
T377 113-212 Sentence denotes In brief, Myr-Akt was immunoprecipitated from L929 cells using anti-FLAG M2 magnetic beads (Sigma).
T378 213-296 Sentence denotes The in vitro assay was performed in the presence of a GSK fusion protein substrate.
T379 297-370 Sentence denotes Phosphorylation of the GSK fusion protein was visualized by western blot.

simple1

Id Subject Object Predicate Lexical cue
T28295 123-130 Protein denotes Myr-Akt

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T28363 135-153 Binding denotes immunoprecipitated
T28362 123-130 Protein denotes Myr-Akt
R19678 T28362 T28363 themeOf Myr-Akt,immunoprecipitated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T28380 135-153 Binding denotes immunoprecipitated
T28379 123-130 Protein denotes Myr-Akt
R19680 T28379 T28380 themeOf Myr-Akt,immunoprecipitated

DLUT931

Id Subject Object Predicate Lexical cue
T28377 135-153 Binding denotes immunoprecipitated
T28376 123-130 Protein denotes Myr-Akt
R19679 T28376 T28377 themeOf Myr-Akt,immunoprecipitated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T28409 278-295 Protein denotes protein substrate
T28408 43-46 Protein denotes Akt
T28406 123-130 Protein denotes Myr-Akt
T28405 186-188 Entity denotes M2
T28404 313-338 Protein denotes of the GSK fusion protein
T28402 0-3 Protein denotes Akt
T28401 86-111 Entity denotes Cell Signaling Technology
T28400 47-53 Protein denotes kinase
T28399 205-210 Protein denotes Sigma
T28398 0-10 Protein denotes Akt kinase
T28397 278-295 Entity denotes protein substrate

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T28423 47-53 NN denotes kinase
T28479 369-370 . denotes .
T28478 365-369 NN denotes blot
T28477 357-364 JJ denotes western
T28476 354-356 IN denotes by
T28475 343-353 VBN denotes visualized
T28474 339-342 VBD denotes was
T28473 331-338 NN denotes protein
T28472 324-330 NN denotes fusion
T28471 320-323 NNP denotes GSK
T28470 316-319 DT denotes the
T28469 313-315 IN denotes of
T28468 297-312 NNP denotes Phosphorylation
T28467 295-296 . denotes .
T28466 286-295 NN denotes substrate
T28465 278-285 NN denotes protein
T28464 271-277 NN denotes fusion
T28463 267-270 NNP denotes GSK
T28462 265-266 DT denotes a
T28461 262-264 IN denotes of
T28460 253-261 NN denotes presence
T28459 249-252 DT denotes the
T28458 246-248 IN denotes in
T28457 236-245 VBN denotes performed
T28456 232-235 VBD denotes was
T28455 226-231 NN denotes assay
T28454 220-225 NN denotes vitro
T28453 217-219 IN denotes in
T28452 213-216 DT denotes The
T28451 211-212 . denotes .
T28450 210-211 -RRB- denotes )
T28449 205-210 NNP denotes Sigma
T28448 204-205 -LRB- denotes (
T28447 198-203 NNS denotes beads
T28446 189-197 JJ denotes magnetic
T28445 186-188 NN denotes M2
T28444 176-185 JJ denotes anti-FLAG
T28443 170-175 VBG denotes using
T28442 164-169 NNS denotes cells
T28441 159-163 CD denotes L929
T28440 154-158 IN denotes from
T28439 135-153 VBN denotes immunoprecipitated
T28438 131-134 VBD denotes was
T28437 123-130 NNP denotes Myr-Akt
T28436 121-122 , denotes ,
T28435 116-121 NN denotes brief
T28434 113-115 IN denotes In
T28433 111-112 . denotes .
T28432 101-111 NNP denotes Technology
T28431 91-100 NNP denotes Signaling
T28430 86-90 NNP denotes Cell
T28429 81-85 IN denotes from
T28428 79-80 -RRB- denotes )
T28427 65-79 JJ denotes nonradioactive
T28426 64-65 -LRB- denotes (
T28425 60-63 NN denotes kit
T28424 54-59 NN denotes assay
T28422 43-46 NNP denotes Akt
T28421 39-42 DT denotes the
T28420 33-38 VBG denotes using
T28419 24-32 VBN denotes measured
T28418 20-23 VBD denotes was
T28417 11-19 NN denotes activity
T28416 4-10 NN denotes kinase
T28415 0-3 NNP denotes Akt
R19688 T28415 T28417 compound Akt,activity
R19689 T28416 T28417 compound kinase,activity
R19691 T28418 T28419 auxpass was,measured
R19692 T28419 T28419 ROOT measured,measured
R19693 T28420 T28419 advcl using,measured
R19694 T28421 T28425 det the,kit
R19695 T28422 T28425 compound Akt,kit
R19696 T28423 T28424 compound kinase,assay
R19697 T28424 T28425 compound assay,kit
R19698 T28425 T28420 dobj kit,using
R19699 T28426 T28425 punct (,kit
R19700 T28427 T28425 appos nonradioactive,kit
R19701 T28428 T28425 punct ),kit
R19702 T28429 T28420 prep from,using
R19703 T28430 T28432 compound Cell,Technology
R19704 T28431 T28432 compound Signaling,Technology
R19705 T28432 T28429 pobj Technology,from
R19706 T28433 T28419 punct .,measured
R19707 T28434 T28439 prep In,immunoprecipitated
R19708 T28435 T28434 pobj brief,In
R19709 T28436 T28439 punct ",",immunoprecipitated
R19710 T28437 T28439 nsubjpass Myr-Akt,immunoprecipitated
R19711 T28438 T28439 auxpass was,immunoprecipitated
R19712 T28439 T28439 ROOT immunoprecipitated,immunoprecipitated
R19713 T28440 T28439 prep from,immunoprecipitated
R19714 T28441 T28442 nummod L929,cells
R19715 T28442 T28440 pobj cells,from
R19716 T28443 T28439 advcl using,immunoprecipitated
R19717 T28444 T28447 amod anti-FLAG,beads
R19718 T28445 T28447 nmod M2,beads
R19719 T28446 T28447 amod magnetic,beads
R19720 T28447 T28443 dobj beads,using
R19721 T28448 T28447 punct (,beads
R19722 T28449 T28447 appos Sigma,beads
R19723 T28450 T28447 punct ),beads
R19724 T28451 T28439 punct .,immunoprecipitated
R19725 T28452 T28455 det The,assay
R19726 T28453 T28455 nmod in,assay
R19727 T28454 T28455 amod vitro,assay
R19728 T28455 T28457 nsubjpass assay,performed
R19729 T28456 T28457 auxpass was,performed
R19730 T28457 T28457 ROOT performed,performed
R19731 T28458 T28457 prep in,performed
R19732 T28459 T28460 det the,presence
R19733 T28460 T28458 pobj presence,in
R19734 T28461 T28460 prep of,presence
R19735 T28462 T28466 det a,substrate
R19736 T28463 T28465 compound GSK,protein
R19737 T28464 T28465 compound fusion,protein
R19738 T28465 T28466 compound protein,substrate
R19739 T28466 T28461 pobj substrate,of
R19740 T28467 T28457 punct .,performed
R19741 T28468 T28475 nsubjpass Phosphorylation,visualized
R19742 T28469 T28468 prep of,Phosphorylation
R19743 T28470 T28473 det the,protein
R19744 T28471 T28473 compound GSK,protein
R19745 T28472 T28473 compound fusion,protein
R19746 T28473 T28469 pobj protein,of
R19747 T28474 T28475 auxpass was,visualized
R19748 T28475 T28475 ROOT visualized,visualized
R19749 T28476 T28475 agent by,visualized
R19750 T28477 T28478 amod western,blot
R19751 T28478 T28476 pobj blot,by
R19752 T28479 T28475 punct .,visualized

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T28388 297-312 Phosphorylation denotes Phosphorylation
T28387 320-338 Protein denotes GSK fusion protein
T28386 267-285 Protein denotes GSK fusion protein
T28385 127-130 Protein denotes Akt
T28384 123-126 Protein denotes Myr
T28383 43-53 Protein denotes Akt kinase
T28382 0-10 Protein denotes Akt kinase
R19681 T28387 T28388 themeOf GSK fusion protein,Phosphorylation

test3

Id Subject Object Predicate Lexical cue
T28278 123-130 Protein denotes Myr-Akt
T28277 123-130 Protein denotes Myr-Akt