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PMC:3585731 / 57079-57276 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T28164 17-21 Protein denotes TNFα
T28163 0-4 Protein denotes TNFα

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T28216 192-196 NN denotes dish
T28215 188-191 NN denotes cm2
T28214 185-187 CD denotes 10
T28213 183-184 DT denotes a
T28212 180-182 IN denotes in
T28211 172-179 VB denotes treated
T28210 168-171 CC denotes and
T28209 161-167 VB denotes plated
T28208 155-160 NN denotes cells
T28207 149-154 CD denotes 3×106
T28206 144-148 IN denotes from
T28205 135-143 VB denotes prepared
T28204 130-134 VB denotes were
T28203 122-129 NN denotes lysates
T28202 117-121 NN denotes Cell
T28201 103-115 NN denotes descriptions
T28200 88-102 NN denotes manufacturer’s
T28199 85-87 TO denotes to
T28198 75-84 VB denotes according
T28197 65-74 VB denotes performed
T28196 60-64 VB denotes were
T28195 58-59 -RRB- denotes )
T28194 51-58 NNP denotes Systems
T28193 49-50 NNP denotes D
T28192 48-49 CC denotes &
T28191 47-48 NN denotes R
T28190 46-47 -LRB- denotes (
T28189 39-45 NN denotes assays
T28188 33-38 NN denotes ELISA
T28187 22-32 NN denotes Quantikine
T28186 17-21 NN denotes TNFα
T28185 11-16 NN denotes Mouse
T28184 5-10 NN denotes ELISA
T28183 0-4 NN denotes TNFα
R19542 T28184 T28183 arg1Of ELISA,TNFα
R19543 T28189 T28185 arg1Of assays,Mouse
R19544 T28189 T28186 arg1Of assays,TNFα
R19545 T28189 T28187 arg1Of assays,Quantikine
R19546 T28189 T28188 arg1Of assays,ELISA
R19547 T28189 T28190 arg1Of assays,(
R19548 T28189 T28196 arg1Of assays,were
R19549 T28189 T28197 arg2Of assays,performed
R19550 T28194 T28190 arg2Of Systems,(
R19551 T28194 T28191 arg1Of Systems,R
R19552 T28194 T28192 arg1Of Systems,&
R19553 T28194 T28193 arg1Of Systems,D
R19554 T28195 T28190 arg3Of ),(
R19555 T28197 T28196 arg2Of performed,were
R19556 T28197 T28198 arg1Of performed,according
R19557 T28199 T28198 arg2Of to,according
R19558 T28201 T28199 arg2Of descriptions,to
R19559 T28201 T28200 arg1Of descriptions,manufacturer’s
R19560 T28203 T28202 arg1Of lysates,Cell
R19561 T28203 T28204 arg1Of lysates,were
R19562 T28203 T28205 arg2Of lysates,prepared
R19563 T28203 T28211 arg2Of lysates,treated
R19564 T28205 T28206 arg1Of prepared,from
R19565 T28205 T28210 arg1Of prepared,and
R19566 T28208 T28206 arg2Of cells,from
R19567 T28208 T28207 arg1Of cells,3×106
R19568 T28208 T28209 arg2Of cells,plated
R19569 T28210 T28204 arg2Of and,were
R19570 T28211 T28210 arg2Of treated,and
R19571 T28211 T28212 arg1Of treated,in
R19572 T28216 T28212 arg2Of dish,in
R19573 T28216 T28213 arg1Of dish,a
R19574 T28216 T28214 arg1Of dish,10
R19575 T28216 T28215 arg1Of dish,cm2

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T28175 17-21 Protein denotes TNFα
T28174 0-4 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T28220 17-21 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T28219 0-4 http://www.uniprot.org/uniprot/P01375 denotes TNFα

GO-CC

Id Subject Object Predicate Lexical cue
T28178 155-167 http://purl.obolibrary.org/obo/GO_0009504 denotes cells plated
T28177 155-160 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T28176 117-121 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell

sentences

Id Subject Object Predicate Lexical cue
T28171 117-197 Sentence denotes Cell lysates were prepared from 3×106 cells plated and treated in a 10 cm2 dish.
T28170 11-116 Sentence denotes Mouse TNFα Quantikine ELISA assays (R&D Systems) were performed according to manufacturer’s descriptions.
T28169 0-10 Sentence denotes TNFα ELISA
T372 0-10 Sentence denotes TNFα ELISA
T373 11-116 Sentence denotes Mouse TNFα Quantikine ELISA assays (R&D Systems) were performed according to manufacturer’s descriptions.
T374 117-197 Sentence denotes Cell lysates were prepared from 3×106 cells plated and treated in a 10 cm2 dish.

simple1

Id Subject Object Predicate Lexical cue
T28182 17-21 Protein denotes TNFα
T28181 0-4 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T28218 17-21 Protein denotes TNFα
T28217 0-4 Protein denotes TNFα

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T28226 17-21 Protein denotes TNFα
T28225 0-4 Protein denotes TNFα

DLUT931

Id Subject Object Predicate Lexical cue
T28224 17-21 Protein denotes TNFα
T28223 0-4 Protein denotes TNFα

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T28271 183-196 Protein denotes a 10 cm2 dish
T28270 117-129 Entity denotes Cell lysates
T28269 0-4 Protein denotes TNFα
T28268 11-32 Protein denotes Mouse TNFα Quantikine
T28267 149-196 Entity denotes 3×106 cells plated and treated in a 10 cm2 dish

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T28244 88-100 NN denotes manufacturer
T28243 85-87 TO denotes to
T28242 75-84 VBG denotes according
T28241 65-74 VBN denotes performed
T28240 60-64 VBD denotes were
T28239 58-59 -RRB- denotes )
T28238 51-58 NNPS denotes Systems
T28237 47-50 NNP denotes R&D
T28236 46-47 -LRB- denotes (
T28235 39-45 NNS denotes assays
T28234 33-38 NNP denotes ELISA
T28233 22-32 NNP denotes Quantikine
T28232 17-21 NNP denotes TNFα
T28231 11-16 NNP denotes Mouse
T28230 5-10 NNP denotes ELISA
T28229 0-4 NNP denotes TNFα
T28264 196-197 . denotes .
T28263 192-196 NN denotes dish
T28262 188-191 NN denotes cm2
T28261 185-187 CD denotes 10
T28260 183-184 DT denotes a
T28259 180-182 IN denotes in
T28258 172-179 VBN denotes treated
T28257 168-171 CC denotes and
T28256 161-167 VBN denotes plated
T28255 155-160 NNS denotes cells
T28254 151-154 CD denotes 106
T28253 150-151 CD denotes ×
T28252 149-150 CD denotes 3
T28251 144-148 IN denotes from
T28250 135-143 VBN denotes prepared
T28249 130-134 VBD denotes were
T28248 122-129 NNS denotes lysates
T28247 117-121 NN denotes Cell
T28246 115-116 . denotes .
T28245 103-115 NNS denotes descriptions
R19576 T28229 T28234 compound TNFα,ELISA
R19577 T28230 T28234 compound ELISA,ELISA
R19578 T28231 T28234 compound Mouse,ELISA
R19579 T28232 T28234 compound TNFα,ELISA
R19580 T28233 T28234 compound Quantikine,ELISA
R19581 T28234 T28235 compound ELISA,assays
R19582 T28235 T28241 nsubjpass assays,performed
R19583 T28236 T28238 punct (,Systems
R19584 T28237 T28238 compound R&D,Systems
R19585 T28238 T28235 appos Systems,assays
R19586 T28239 T28235 punct ),assays
R19587 T28240 T28241 auxpass were,performed
R19588 T28241 T28241 ROOT performed,performed
R19589 T28242 T28241 prep according,performed
R19590 T28243 T28242 prep to,according
R19591 T28244 T28245 poss manufacturer,descriptions
R19592 T28245 T28243 pobj descriptions,to
R19593 T28246 T28241 punct .,performed
R19594 T28247 T28248 compound Cell,lysates
R19595 T28248 T28250 nsubjpass lysates,prepared
R19607 T28260 T28263 det a,dish
R19608 T28261 T28263 nummod 10,dish
R19609 T28262 T28263 compound cm2,dish
R19610 T28263 T28259 pobj dish,in
R19611 T28264 T28250 punct .,prepared
R19596 T28249 T28250 auxpass were,prepared
R19597 T28250 T28250 ROOT prepared,prepared
R19598 T28251 T28250 prep from,prepared
R19599 T28252 T28255 nummod 3,cells
R19600 T28253 T28255 nummod ×,cells
R19601 T28254 T28255 nummod 106,cells
R19602 T28255 T28251 pobj cells,from
R19603 T28256 T28255 acl plated,cells
R19604 T28257 T28256 cc and,plated
R19605 T28258 T28256 conj treated,plated
R19606 T28259 T28258 prep in,treated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T28228 11-38 Protein denotes Mouse TNFα Quantikine ELISA
T28227 0-10 Protein denotes TNFα ELISA

test3

Id Subject Object Predicate Lexical cue
T28168 17-21 Protein denotes TNFα
T28167 0-4 Protein denotes TNFα
T28166 17-21 Protein denotes TNFα
T28165 0-4 Protein denotes TNFα