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PMC:3585731 / 55708-56074 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T27675 299-308 NN denotes SYBRGreen
T27674 293-298 VB denotes using
T27673 284-292 NN denotes performs
T27672 279-283 VB denotes were
T27671 269-278 NN denotes Reactions
T27670 258-267 NN denotes reactions
T27669 253-257 NN denotes qPCR
T27668 250-252 IN denotes in
T27667 242-249 NN denotes primers
T27666 239-241 NN denotes pM
T27665 235-238 CD denotes 500
T27664 230-234 IN denotes with
T27663 225-229 VB denotes used
T27662 221-224 VB denotes was
T27661 216-220 NN denotes cDNA
T27660 213-215 IN denotes of
T27659 210-212 NN denotes µL
T27658 208-209 CD denotes 1
T27657 205-206 -RRB- denotes )
T27656 198-205 NNP denotes Biolabs
T27655 190-197 NNP denotes England
T27654 186-189 NNP denotes New
T27653 184-185 -COMMA- denotes ,
T27652 181-184 NN denotes kit
T27651 176-180 NN denotes cDNA
T27650 169-175 NN denotes M-MuLV
T27649 168-169 -LRB- denotes (
T27648 160-167 NN denotes primers
T27647 153-159 JJ denotes random
T27646 147-152 VB denotes using
T27645 142-146 NN denotes cDNA
T27644 139-141 TO denotes to
T27643 129-138 VB denotes converted
T27642 125-128 VB denotes was
T27641 121-124 NN denotes RNA
T27640 118-120 IN denotes of
T27639 115-117 NN denotes µg
T27638 113-114 CD denotes 1
T27637 110-111 -RRB- denotes )
T27636 102-110 NNP denotes Research
T27635 97-101 NNP denotes Zymo
T27634 96-97 -LRB- denotes (
T27633 92-95 NN denotes kit
T27632 83-91 NN denotes Miniprep
T27631 80-82 NN denotes ZR
T27630 74-79 VB denotes using
T27629 65-73 VB denotes isolated
T27628 61-64 VB denotes was
T27627 57-60 NN denotes RNA
T27626 51-56 JJ denotes Total
T27625 44-49 NN denotes blots
T27624 36-43 JJ denotes Western
T27623 32-35 IN denotes for
T27622 22-31 VB denotes described
T27621 19-21 IN denotes as
T27620 11-18 VB denotes treated
T27619 6-10 VB denotes were
T27618 0-5 NN denotes Cells
T27686 364-365 -RRB- denotes )
T27685 359-364 NN denotes Roche
T27684 358-359 -LRB- denotes (
T27683 343-357 NN denotes LightCycler480
T27682 341-342 DT denotes a
T27681 338-340 IN denotes in
T27680 336-337 -RRB- denotes )
T27679 323-336 NN denotes SABiosciences
T27678 322-323 -LRB- denotes (
T27677 318-321 NN denotes mix
T27676 309-317 NN denotes 2×Master
R19061 T27618 T27619 arg1Of Cells,were
R19062 T27618 T27620 arg2Of Cells,treated
R19063 T27620 T27619 arg2Of treated,were
R19064 T27620 T27621 arg1Of treated,as
R19065 T27622 T27621 arg2Of described,as
R19066 T27622 T27623 arg1Of described,for
R19067 T27625 T27623 arg2Of blots,for
R19068 T27625 T27624 arg1Of blots,Western
R19069 T27627 T27626 arg1Of RNA,Total
R19070 T27627 T27628 arg1Of RNA,was
R19071 T27627 T27629 arg2Of RNA,isolated
R19072 T27629 T27628 arg2Of isolated,was
R19073 T27630 T27629 arg3Of using,isolated
R19074 T27633 T27630 arg2Of kit,using
R19075 T27633 T27631 arg1Of kit,ZR
R19076 T27633 T27632 arg1Of kit,Miniprep
R19077 T27633 T27634 arg1Of kit,(
R19078 T27636 T27634 arg2Of Research,(
R19079 T27636 T27635 arg1Of Research,Zymo
R19080 T27637 T27634 arg3Of ),(
R19081 T27639 T27638 arg1Of µg,1
R19082 T27639 T27640 arg1Of µg,of
R19083 T27639 T27642 arg1Of µg,was
R19084 T27639 T27643 arg2Of µg,converted
R19085 T27641 T27640 arg2Of RNA,of
R19086 T27643 T27642 arg2Of converted,was
R19087 T27643 T27644 arg1Of converted,to
R19088 T27645 T27644 arg2Of cDNA,to
R19089 T27645 T27646 arg1Of cDNA,using
R19090 T27648 T27646 arg2Of primers,using
R19091 T27648 T27647 arg1Of primers,random
R19092 T27648 T27649 arg1Of primers,(
R19093 T27652 T27649 arg2Of kit,(
R19094 T27652 T27650 arg1Of kit,M-MuLV
R19095 T27652 T27651 arg1Of kit,cDNA
R19096 T27652 T27653 arg1Of kit,","
R19097 T27656 T27653 arg2Of Biolabs,","
R19098 T27656 T27654 arg1Of Biolabs,New
R19099 T27656 T27655 arg1Of Biolabs,England
R19100 T27657 T27649 arg3Of ),(
R19101 T27659 T27658 arg1Of µL,1
R19102 T27659 T27660 arg1Of µL,of
R19103 T27659 T27662 arg1Of µL,was
R19104 T27659 T27663 arg2Of µL,used
R19105 T27661 T27660 arg2Of cDNA,of
R19106 T27663 T27662 arg2Of used,was
R19107 T27663 T27664 arg1Of used,with
R19108 T27667 T27664 arg2Of primers,with
R19109 T27667 T27665 arg1Of primers,500
R19110 T27667 T27666 arg1Of primers,pM
R19111 T27667 T27668 arg1Of primers,in
R19112 T27670 T27668 arg2Of reactions,in
R19113 T27670 T27669 arg1Of reactions,qPCR
R19114 T27671 T27672 arg1Of Reactions,were
R19115 T27673 T27672 arg2Of performs,were
R19116 T27673 T27674 arg1Of performs,using
R19117 T27677 T27674 arg2Of mix,using
R19118 T27677 T27675 arg1Of mix,SYBRGreen
R19119 T27677 T27676 arg1Of mix,2×Master
R19120 T27677 T27678 arg1Of mix,(
R19121 T27677 T27681 arg1Of mix,in
R19122 T27679 T27678 arg2Of SABiosciences,(
R19123 T27680 T27678 arg3Of ),(
R19124 T27683 T27681 arg2Of LightCycler480,in
R19125 T27683 T27682 arg1Of LightCycler480,a
R19126 T27683 T27684 arg1Of LightCycler480,(
R19127 T27685 T27684 arg2Of Roche,(
R19128 T27686 T27684 arg3Of ),(

sentences

Id Subject Object Predicate Lexical cue
T27616 269-366 Sentence denotes Reactions were performs using SYBRGreen 2×Master mix (SABiosciences) in a LightCycler480 (Roche).
T27615 208-268 Sentence denotes 1 µL of cDNA was used with 500 pM primers in qPCR reactions.
T27614 113-207 Sentence denotes 1 µg of RNA was converted to cDNA using random primers (M-MuLV cDNA kit, New England Biolabs).
T27613 51-112 Sentence denotes Total RNA was isolated using ZR Miniprep kit (Zymo Research).
T27612 0-50 Sentence denotes Cells were treated as described for Western blots.
T356 0-50 Sentence denotes Cells were treated as described for Western blots.
T357 51-112 Sentence denotes Total RNA was isolated using ZR Miniprep kit (Zymo Research).
T358 113-207 Sentence denotes 1 µg of RNA was converted to cDNA using random primers (M-MuLV cDNA kit, New England Biolabs).
T359 208-268 Sentence denotes 1 µL of cDNA was used with 500 pM primers in qPCR reactions.
T360 269-366 Sentence denotes Reactions were performs using SYBRGreen 2×Master mix (SABiosciences) in a LightCycler480 (Roche).

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T27692 51-60 Protein denotes Total RNA
T27691 253-267 Protein denotes qPCR reactions
T27690 121-124 Protein denotes RNA
T27689 0-5 Entity denotes Cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T27770 365-366 . denotes .
T27769 364-365 -RRB- denotes )
T27768 359-364 NNP denotes Roche
T27767 358-359 -LRB- denotes (
T27766 343-357 NNP denotes LightCycler480
T27765 341-342 DT denotes a
T27764 338-340 IN denotes in
T27763 336-337 -RRB- denotes )
T27762 323-336 NNS denotes SABiosciences
T27761 322-323 -LRB- denotes (
T27760 318-321 NN denotes mix
T27759 311-317 NNP denotes Master
T27758 310-311 CD denotes ×
T27757 309-310 CD denotes 2
T27756 299-308 NNP denotes SYBRGreen
T27755 293-298 VBG denotes using
T27754 284-292 VBZ denotes performs
T27753 279-283 VBD denotes were
T27752 269-278 NNS denotes Reactions
T27751 267-268 . denotes .
T27750 258-267 NNS denotes reactions
T27749 253-257 NNP denotes qPCR
T27748 250-252 IN denotes in
T27747 242-249 NNS denotes primers
T27746 239-241 NN denotes pM
T27745 235-238 CD denotes 500
T27744 230-234 IN denotes with
T27743 225-229 VBN denotes used
T27742 221-224 VBD denotes was
T27741 216-220 NNP denotes cDNA
T27740 213-215 IN denotes of
T27739 210-212 NN denotes µL
T27738 208-209 CD denotes 1
T27737 206-207 . denotes .
T27736 205-206 -RRB- denotes )
T27735 198-205 NNPS denotes Biolabs
T27734 190-197 NNP denotes England
T27733 186-189 NNP denotes New
T27732 184-185 , denotes ,
T27731 181-184 NN denotes kit
T27730 176-180 NNP denotes cDNA
T27729 169-175 NNP denotes M-MuLV
T27728 168-169 -LRB- denotes (
T27727 160-167 NNS denotes primers
T27726 153-159 JJ denotes random
T27725 147-152 VBG denotes using
T27724 142-146 NNP denotes cDNA
T27723 139-141 TO denotes to
T27722 129-138 VBN denotes converted
T27721 125-128 VBD denotes was
T27720 121-124 NNP denotes RNA
T27719 118-120 IN denotes of
T27718 115-117 NN denotes µg
T27717 113-114 CD denotes 1
T27716 111-112 . denotes .
T27715 110-111 -RRB- denotes )
T27714 102-110 NNP denotes Research
T27713 97-101 NNP denotes Zymo
T27712 96-97 -LRB- denotes (
T27711 92-95 NN denotes kit
T27710 83-91 NNP denotes Miniprep
T27709 80-82 NNP denotes ZR
T27708 74-79 VBG denotes using
T27707 65-73 VBN denotes isolated
T27706 61-64 VBD denotes was
T27705 57-60 NNP denotes RNA
T27704 51-56 JJ denotes Total
T27703 49-50 . denotes .
T27702 44-49 NNS denotes blots
T27701 36-43 JJ denotes Western
T27700 32-35 IN denotes for
T27699 22-31 VBN denotes described
T27698 19-21 IN denotes as
T27697 11-18 VBN denotes treated
T27696 6-10 VBD denotes were
T27695 0-5 NNPS denotes Cells
R19130 T27695 T27697 nsubjpass Cells,treated
R19131 T27696 T27697 auxpass were,treated
R19132 T27697 T27697 ROOT treated,treated
R19133 T27698 T27699 mark as,described
R19134 T27699 T27697 advcl described,treated
R19135 T27700 T27699 prep for,described
R19136 T27701 T27702 amod Western,blots
R19137 T27702 T27700 pobj blots,for
R19138 T27703 T27697 punct .,treated
R19139 T27704 T27705 amod Total,RNA
R19140 T27705 T27707 nsubjpass RNA,isolated
R19141 T27706 T27707 auxpass was,isolated
R19142 T27707 T27707 ROOT isolated,isolated
R19143 T27708 T27707 advcl using,isolated
R19144 T27709 T27711 compound ZR,kit
R19145 T27710 T27711 compound Miniprep,kit
R19146 T27711 T27708 dobj kit,using
R19147 T27712 T27711 punct (,kit
R19148 T27713 T27714 compound Zymo,Research
R19149 T27714 T27711 appos Research,kit
R19150 T27715 T27711 punct ),kit
R19151 T27716 T27717 punct .,1
R19152 T27717 T27718 nummod 1,µg
R19153 T27718 T27722 nsubjpass µg,converted
R19154 T27719 T27718 prep of,µg
R19155 T27720 T27719 pobj RNA,of
R19156 T27721 T27722 auxpass was,converted
R19157 T27722 T27707 conj converted,isolated
R19158 T27723 T27722 prep to,converted
R19159 T27724 T27723 pobj cDNA,to
R19160 T27725 T27722 advcl using,converted
R19161 T27726 T27727 amod random,primers
R19162 T27727 T27725 dobj primers,using
R19163 T27728 T27727 punct (,primers
R19164 T27729 T27730 compound M-MuLV,cDNA
R19165 T27730 T27731 compound cDNA,kit
R19166 T27731 T27727 appos kit,primers
R19167 T27732 T27731 punct ",",kit
R19168 T27733 T27734 compound New,England
R19169 T27734 T27735 compound England,Biolabs
R19170 T27735 T27731 appos Biolabs,kit
R19171 T27736 T27727 punct ),primers
R19172 T27737 T27722 punct .,converted
R19173 T27738 T27739 nummod 1,µL
R19174 T27739 T27743 nsubjpass µL,used
R19175 T27740 T27739 prep of,µL
R19176 T27741 T27740 pobj cDNA,of
R19177 T27742 T27743 auxpass was,used
R19178 T27743 T27743 ROOT used,used
R19179 T27744 T27743 prep with,used
R19180 T27745 T27746 nummod 500,pM
R19181 T27746 T27747 compound pM,primers
R19182 T27747 T27744 pobj primers,with
R19183 T27748 T27747 prep in,primers
R19184 T27749 T27750 compound qPCR,reactions
R19185 T27750 T27748 pobj reactions,in
R19186 T27751 T27743 punct .,used
R19187 T27752 T27754 nsubj Reactions,performs
R19188 T27753 T27754 advmod were,performs
R19189 T27754 T27754 ROOT performs,performs
R19190 T27755 T27754 advcl using,performs
R19191 T27756 T27760 nmod SYBRGreen,mix
R19192 T27757 T27756 nummod 2,SYBRGreen
R19193 T27758 T27760 nummod ×,mix
R19194 T27759 T27760 compound Master,mix
R19195 T27760 T27755 dobj mix,using
R19196 T27761 T27760 punct (,mix
R19197 T27762 T27760 appos SABiosciences,mix
R19198 T27763 T27760 punct ),mix
R19199 T27764 T27755 prep in,using
R19200 T27765 T27766 det a,LightCycler480
R19201 T27766 T27764 pobj LightCycler480,in
R19202 T27767 T27766 punct (,LightCycler480
R19203 T27768 T27766 appos Roche,LightCycler480
R19204 T27769 T27766 punct ),LightCycler480
R19205 T27770 T27754 punct .,performs

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T27687 299-321 Protein denotes SYBRGreen 2×Master mix