PMC:3585731 / 53891-54464 JSONTXT

{"project":"testone","denotations":[{"id":"T26705","span":{"begin":511,"end":515},"obj":"Protein"},{"id":"T26704","span":{"begin":312,"end":317},"obj":"Protein"},{"id":"T26703","span":{"begin":285,"end":290},"obj":"Protein"},{"id":"T26702","span":{"begin":222,"end":226},"obj":"Protein"},{"id":"T26701","span":{"begin":170,"end":174},"obj":"Protein"},{"id":"T26700","span":{"begin":144,"end":148},"obj":"Protein"},{"id":"T26699","span":{"begin":118,"end":122},"obj":"Protein"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}

{"project":"pmc-enju-pas","denotations":[{"id":"T26858","span":{"begin":571,"end":572},"obj":"-RRB-"},{"id":"T26857","span":{"begin":562,"end":571},"obj":"NN"},{"id":"T26856","span":{"begin":557,"end":561},"obj":"NN"},{"id":"T26855","span":{"begin":556,"end":557},"obj":"-LRB-"},{"id":"T26854","span":{"begin":553,"end":555},"obj":"NN"},{"id":"T26853","span":{"begin":550,"end":552},"obj":"CD"},{"id":"T26852","span":{"begin":547,"end":549},"obj":"CC"},{"id":"T26851","span":{"begin":545,"end":546},"obj":"-RRB-"},{"id":"T26850","span":{"begin":541,"end":545},"obj":"NN"},{"id":"T26849","span":{"begin":533,"end":540},"obj":"JJ"},{"id":"T26848","span":{"begin":530,"end":532},"obj":"CC"},{"id":"T26847","span":{"begin":526,"end":529},"obj":"NN"},{"id":"T26846","span":{"begin":525,"end":526},"obj":"-LRB-"},{"id":"T26845","span":{"begin":522,"end":524},"obj":"NN"},{"id":"T26844","span":{"begin":520,"end":521},"obj":"CD"},{"id":"T26843","span":{"begin":516,"end":519},"obj":"IN"},{"id":"T26842","span":{"begin":511,"end":515},"obj":"NN"},{"id":"T26841","span":{"begin":508,"end":510},"obj":"CC"},{"id":"T26840","span":{"begin":499,"end":507},"obj":"NN"},{"id":"T26839","span":{"begin":494,"end":498},"obj":"IN"},{"id":"T26838","span":{"begin":486,"end":493},"obj":"VB"},{"id":"T26837","span":{"begin":481,"end":485},"obj":"VB"},{"id":"T26836","span":{"begin":475,"end":480},"obj":"NN"},{"id":"T26835","span":{"begin":473,"end":474},"obj":"-COMMA-"},{"id":"T26834","span":{"begin":471,"end":473},"obj":"NN"},{"id":"T26833","span":{"begin":468,"end":470},"obj":"CD"},{"id":"T26832","span":{"begin":462,"end":467},"obj":"IN"},{"id":"T26831","span":{"begin":433,"end":448},"obj":"NN"},{"id":"T26830","span":{"begin":419,"end":433},"obj":"NN"},{"id":"T26829","span":{"begin":417,"end":419},"obj":"TO"},{"id":"T26828","span":{"begin":408,"end":417},"obj":"VB"},{"id":"T26827","span":{"begin":407,"end":408},"obj":"-COMMA-"},{"id":"T26826","span":{"begin":406,"end":407},"obj":"-RRB-"},{"id":"T26825","span":{"begin":396,"end":406},"obj":"NN"},{"id":"T26824","span":{"begin":395,"end":396},"obj":"-LRB-"},{"id":"T26823","span":{"begin":388,"end":395},"obj":"NN"},{"id":"T26822","span":{"begin":381,"end":388},"obj":"NN"},{"id":"T26821","span":{"begin":376,"end":381},"obj":"VB"},{"id":"T26820","span":{"begin":365,"end":376},"obj":"VB"},{"id":"T26819","span":{"begin":361,"end":365},"obj":"VB"},{"id":"T26818","span":{"begin":356,"end":361},"obj":"NN"},{"id":"T26817","span":{"begin":355,"end":356},"obj":"-RRB-"},{"id":"T26816","span":{"begin":344,"end":355},"obj":"NN"},{"id":"T26815","span":{"begin":343,"end":344},"obj":"-LRB-"},{"id":"T26814","span":{"begin":339,"end":342},"obj":"NN"},{"id":"T26813","span":{"begin":333,"end":338},"obj":"NN"},{"id":"T26812","span":{"begin":331,"end":332},"obj":"-COMMA-"},{"id":"T26811","span":{"begin":330,"end":331},"obj":"-RRB-"},{"id":"T26810","span":{"begin":319,"end":330},"obj":"NN"},{"id":"T26809","span":{"begin":318,"end":319},"obj":"-LRB-"},{"id":"T26808","span":{"begin":312,"end":317},"obj":"NN"},{"id":"T26807","span":{"begin":306,"end":311},"obj":"NN"},{"id":"T26806","span":{"begin":304,"end":305},"obj":"-COMMA-"},{"id":"T26805","span":{"begin":303,"end":304},"obj":"-RRB-"},{"id":"T26804","span":{"begin":292,"end":303},"obj":"NN"},{"id":"T26803","span":{"begin":291,"end":292},"obj":"-LRB-"},{"id":"T26802","span":{"begin":285,"end":290},"obj":"NN"},{"id":"T26801","span":{"begin":279,"end":284},"obj":"NN"},{"id":"T26800","span":{"begin":277,"end":278},"obj":"-COMMA-"},{"id":"T26799","span":{"begin":276,"end":277},"obj":"-RRB-"},{"id":"T26798","span":{"begin":262,"end":276},"obj":"NN"},{"id":"T26797","span":{"begin":261,"end":262},"obj":"-LRB-"},{"id":"T26796","span":{"begin":253,"end":260},"obj":"NN"},{"id":"T26795","span":{"begin":242,"end":252},"obj":"JJ"},{"id":"T26794","span":{"begin":240,"end":241},"obj":"-COMMA-"},{"id":"T26793","span":{"begin":239,"end":240},"obj":"-RRB-"},{"id":"T26792","span":{"begin":228,"end":239},"obj":"NN"},{"id":"T26791","span":{"begin":227,"end":228},"obj":"-LRB-"},{"id":"T26790","span":{"begin":222,"end":226},"obj":"NN"},{"id":"T26789","span":{"begin":216,"end":221},"obj":"NN"},{"id":"T26788","span":{"begin":214,"end":215},"obj":"-COMMA-"},{"id":"T26787","span":{"begin":213,"end":214},"obj":"-RRB-"},{"id":"T26786","span":{"begin":202,"end":213},"obj":"NN"},{"id":"T26785","span":{"begin":201,"end":202},"obj":"-LRB-"},{"id":"T26784","span":{"begin":196,"end":200},"obj":"NN"},{"id":"T26783","span":{"begin":190,"end":195},"obj":"NN"},{"id":"T26782","span":{"begin":188,"end":189},"obj":"-COMMA-"},{"id":"T26781","span":{"begin":187,"end":188},"obj":"-RRB-"},{"id":"T26780","span":{"begin":176,"end":187},"obj":"NN"},{"id":"T26779","span":{"begin":175,"end":176},"obj":"-LRB-"},{"id":"T26778","span":{"begin":170,"end":174},"obj":"NN"},{"id":"T26777","span":{"begin":164,"end":169},"obj":"NN"},{"id":"T26776","span":{"begin":162,"end":163},"obj":"-COMMA-"},{"id":"T26775","span":{"begin":161,"end":162},"obj":"-RRB-"},{"id":"T26774","span":{"begin":150,"end":161},"obj":"NN"},{"id":"T26773","span":{"begin":149,"end":150},"obj":"-LRB-"},{"id":"T26772","span":{"begin":144,"end":148},"obj":"NN"},{"id":"T26771","span":{"begin":138,"end":143},"obj":"NN"},{"id":"T26770","span":{"begin":136,"end":137},"obj":"-COMMA-"},{"id":"T26769","span":{"begin":135,"end":136},"obj":"-RRB-"},{"id":"T26768","span":{"begin":124,"end":135},"obj":"NN"},{"id":"T26767","span":{"begin":123,"end":124},"obj":"-LRB-"},{"id":"T26766","span":{"begin":118,"end":122},"obj":"NN"},{"id":"T26765","span":{"begin":112,"end":117},"obj":"NN"},{"id":"T26764","span":{"begin":110,"end":111},"obj":"-COMMA-"},{"id":"T26763","span":{"begin":109,"end":110},"obj":"-RRB-"},{"id":"T26762","span":{"begin":98,"end":109},"obj":"NN"},{"id":"T26761","span":{"begin":94,"end":97},"obj":"CC"},{"id":"T26760","span":{"begin":82,"end":93},"obj":"NN"},{"id":"T26759","span":{"begin":81,"end":82},"obj":"-LRB-"},{"id":"T26758","span":{"begin":73,"end":80},"obj":"NN"},{"id":"T26757","span":{"begin":70,"end":72},"obj":"NN"},{"id":"T26756","span":{"begin":60,"end":69},"obj":"JJ"},{"id":"T26755","span":{"begin":54,"end":59},"obj":"NNP"},{"id":"T26754","span":{"begin":43,"end":53},"obj":"NNP"},{"id":"T26753","span":{"begin":38,"end":42},"obj":"IN"},{"id":"T26752","span":{"begin":28,"end":37},"obj":"VB"},{"id":"T26751","span":{"begin":23,"end":27},"obj":"VB"},{"id":"T26750","span":{"begin":16,"end":22},"obj":"NN"},{"id":"T26749","span":{"begin":6,"end":15},"obj":"NN"},{"id":"T26748","span":{"begin":0,"end":5},"obj":"NN"}],"relations":[{"id":"R18350","pred":"arg1Of","subj":"T26749","obj":"T26748"},{"id":"R18351","pred":"arg1Of","subj":"T26750","obj":"T26751"},{"id":"R18352","pred":"arg2Of","subj":"T26750","obj":"T26752"},{"id":"R18353","pred":"arg2Of","subj":"T26752","obj":"T26751"},{"id":"R18354","pred":"arg1Of","subj":"T26752","obj":"T26753"},{"id":"R18355","pred":"arg1Of","subj":"T26755","obj":"T26754"},{"id":"R18356","pred":"arg1Of","subj":"T26758","obj":"T26755"},{"id":"R18357","pred":"arg1Of","subj":"T26758","obj":"T26756"},{"id":"R18358","pred":"arg1Of","subj":"T26758","obj":"T26757"},{"id":"R18359","pred":"arg1Of","subj":"T26758","obj":"T26759"},{"id":"R18360","pred":"arg1Of","subj":"T26758","obj":"T26764"},{"id":"R18361","pred":"arg1Of","subj":"T26760","obj":"T26761"},{"id":"R18362","pred":"arg2Of","subj":"T26761","obj":"T26759"},{"id":"R18363","pred":"arg2Of","subj":"T26762","obj":"T26761"},{"id":"R18364","pred":"arg3Of","subj":"T26763","obj":"T26759"},{"id":"R18365","pred":"arg1Of","subj":"T26764","obj":"T26770"},{"id":"R18366","pred":"arg2Of","subj":"T26766","obj":"T26764"},{"id":"R18367","pred":"arg1Of","subj":"T26766","obj":"T26765"},{"id":"R18368","pred":"arg1Of","subj":"T26766","obj":"T26767"},{"id":"R18369","pred":"arg2Of","subj":"T26768","obj":"T26767"},{"id":"R18370","pred":"arg3Of","subj":"T26769","obj":"T26767"},{"id":"R18371","pred":"arg1Of","subj":"T26770","obj":"T26788"},{"id":"R18372","pred":"arg1Of","subj":"T26772","obj":"T26771"},{"id":"R18373","pred":"arg1Of","subj":"T26772","obj":"T26773"},{"id":"R18374","pred":"arg1Of","subj":"T26772","obj":"T26776"},{"id":"R18375","pred":"arg2Of","subj":"T26774","obj":"T26773"},{"id":"R18376","pred":"arg3Of","subj":"T26775","obj":"T26773"},{"id":"R18377","pred":"arg1Of","subj":"T26776","obj":"T26782"},{"id":"R18378","pred":"arg2Of","subj":"T26778","obj":"T26776"},{"id":"R18379","pred":"arg1Of","subj":"T26778","obj":"T26777"},{"id":"R18380","pred":"arg1Of","subj":"T26778","obj":"T26779"},{"id":"R18381","pred":"arg2Of","subj":"T26780","obj":"T26779"},{"id":"R18382","pred":"arg3Of","subj":"T26781","obj":"T26779"},{"id":"R18383","pred":"arg2Of","subj":"T26782","obj":"T26770"},{"id":"R18384","pred":"arg2Of","subj":"T26784","obj":"T26782"},{"id":"R18385","pred":"arg1Of","subj":"T26784","obj":"T26783"},{"id":"R18386","pred":"arg1Of","subj":"T26784","obj":"T26785"},{"id":"R18387","pred":"arg2Of","subj":"T26786","obj":"T26785"},{"id":"R18388","pred":"arg3Of","subj":"T26787","obj":"T26785"},{"id":"R18389","pred":"arg2Of","subj":"T26788","obj":"T26753"},{"id":"R18390","pred":"arg1Of","subj":"T26788","obj":"T26794"},{"id":"R18391","pred":"arg2Of","subj":"T26790","obj":"T26788"},{"id":"R18392","pred":"arg1Of","subj":"T26790","obj":"T26789"},{"id":"R18393","pred":"arg1Of","subj":"T26790","obj":"T26791"},{"id":"R18394","pred":"arg2Of","subj":"T26792","obj":"T26791"},{"id":"R18395","pred":"arg3Of","subj":"T26793","obj":"T26791"},{"id":"R18396","pred":"arg1Of","subj":"T26796","obj":"T26795"},{"id":"R18397","pred":"arg1Of","subj":"T26796","obj":"T26797"},{"id":"R18398","pred":"arg1Of","subj":"T26796","obj":"T26800"},{"id":"R18399","pred":"arg2Of","subj":"T26798","obj":"T26797"},{"id":"R18400","pred":"arg3Of","subj":"T26799","obj":"T26797"},{"id":"R18401","pred":"arg1Of","subj":"T26800","obj":"T26806"},{"id":"R18402","pred":"arg2Of","subj":"T26802","obj":"T26800"},{"id":"R18403","pred":"arg1Of","subj":"T26802","obj":"T26801"},{"id":"R18404","pred":"arg1Of","subj":"T26802","obj":"T26803"},{"id":"R18405","pred":"arg2Of","subj":"T26804","obj":"T26803"},{"id":"R18406","pred":"arg3Of","subj":"T26805","obj":"T26803"},{"id":"R18407","pred":"arg2Of","subj":"T26806","obj":"T26794"},{"id":"R18408","pred":"modOf","subj":"T26806","obj":"T26819"},{"id":"R18409","pred":"arg2Of","subj":"T26808","obj":"T26806"},{"id":"R18410","pred":"arg1Of","subj":"T26808","obj":"T26807"},{"id":"R18411","pred":"arg1Of","subj":"T26808","obj":"T26809"},{"id":"R18412","pred":"arg2Of","subj":"T26810","obj":"T26809"},{"id":"R18413","pred":"arg3Of","subj":"T26811","obj":"T26809"},{"id":"R18414","pred":"arg2Of","subj":"T26816","obj":"T26815"},{"id":"R18415","pred":"arg3Of","subj":"T26817","obj":"T26815"},{"id":"R18416","pred":"arg1Of","subj":"T26818","obj":"T26813"},{"id":"R18417","pred":"arg1Of","subj":"T26818","obj":"T26814"},{"id":"R18418","pred":"arg1Of","subj":"T26818","obj":"T26815"},{"id":"R18419","pred":"arg1Of","subj":"T26818","obj":"T26819"},{"id":"R18420","pred":"arg2Of","subj":"T26818","obj":"T26820"},{"id":"R18421","pred":"arg1Of","subj":"T26820","obj":"T26812"},{"id":"R18422","pred":"arg2Of","subj":"T26820","obj":"T26819"},{"id":"R18423","pred":"modOf","subj":"T26820","obj":"T26821"},{"id":"R18424","pred":"arg1Of","subj":"T26820","obj":"T26827"},{"id":"R18425","pred":"arg1Of","subj":"T26820","obj":"T26828"},{"id":"R18426","pred":"arg2Of","subj":"T26823","obj":"T26821"},{"id":"R18427","pred":"arg1Of","subj":"T26823","obj":"T26822"},{"id":"R18428","pred":"arg1Of","subj":"T26823","obj":"T26824"},{"id":"R18429","pred":"arg2Of","subj":"T26825","obj":"T26824"},{"id":"R18430","pred":"arg3Of","subj":"T26826","obj":"T26824"},{"id":"R18431","pred":"arg2Of","subj":"T26829","obj":"T26828"},{"id":"R18432","pred":"arg2Of","subj":"T26831","obj":"T26829"},{"id":"R18433","pred":"arg1Of","subj":"T26831","obj":"T26830"},{"id":"R18434","pred":"arg2Of","subj":"T26834","obj":"T26832"},{"id":"R18435","pred":"arg1Of","subj":"T26834","obj":"T26833"},{"id":"R18436","pred":"arg1Of","subj":"T26836","obj":"T26837"},{"id":"R18437","pred":"arg2Of","subj":"T26836","obj":"T26838"},{"id":"R18438","pred":"arg1Of","subj":"T26838","obj":"T26832"},{"id":"R18439","pred":"arg1Of","subj":"T26838","obj":"T26835"},{"id":"R18440","pred":"arg2Of","subj":"T26838","obj":"T26837"},{"id":"R18441","pred":"arg1Of","subj":"T26838","obj":"T26839"},{"id":"R18442","pred":"arg1Of","subj":"T26838","obj":"T26843"},{"id":"R18443","pred":"arg1Of","subj":"T26840","obj":"T26841"},{"id":"R18444","pred":"arg2Of","subj":"T26841","obj":"T26839"},{"id":"R18445","pred":"arg2Of","subj":"T26842","obj":"T26841"},{"id":"R18446","pred":"arg1Of","subj":"T26845","obj":"T26844"},{"id":"R18447","pred":"arg1Of","subj":"T26845","obj":"T26846"},{"id":"R18448","pred":"arg1Of","subj":"T26845","obj":"T26852"},{"id":"R18449","pred":"arg1Of","subj":"T26847","obj":"T26848"},{"id":"R18450","pred":"arg2Of","subj":"T26848","obj":"T26846"},{"id":"R18451","pred":"arg2Of","subj":"T26850","obj":"T26848"},{"id":"R18452","pred":"arg1Of","subj":"T26850","obj":"T26849"},{"id":"R18453","pred":"arg3Of","subj":"T26851","obj":"T26846"},{"id":"R18454","pred":"arg2Of","subj":"T26852","obj":"T26843"},{"id":"R18455","pred":"arg2Of","subj":"T26854","obj":"T26852"},{"id":"R18456","pred":"arg1Of","subj":"T26854","obj":"T26853"},{"id":"R18457","pred":"arg1Of","subj":"T26854","obj":"T26855"},{"id":"R18458","pred":"arg2Of","subj":"T26857","obj":"T26855"},{"id":"R18459","pred":"arg1Of","subj":"T26857","obj":"T26856"},{"id":"R18460","pred":"arg3Of","subj":"T26858","obj":"T26855"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}

{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T26736","span":{"begin":511,"end":515},"obj":"Protein"},{"id":"T26735","span":{"begin":312,"end":317},"obj":"Protein"},{"id":"T26734","span":{"begin":285,"end":290},"obj":"Protein"},{"id":"T26733","span":{"begin":222,"end":226},"obj":"Protein"},{"id":"T26732","span":{"begin":170,"end":174},"obj":"Protein"},{"id":"T26731","span":{"begin":144,"end":148},"obj":"Protein"},{"id":"T26730","span":{"begin":118,"end":122},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}

{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T26874","span":{"begin":511,"end":515},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T26873","span":{"begin":196,"end":200},"obj":"http://www.uniprot.org/uniprot/P42345"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}

{"project":"GO-BP","denotations":[{"id":"T26737","span":{"begin":222,"end":226},"obj":"http://purl.obolibrary.org/obo/GO_0004740"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}

{"project":"GO-MF","denotations":[{"id":"T26738","span":{"begin":222,"end":226},"obj":"http://purl.obolibrary.org/obo/GO_0004740"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}

{"project":"GO-CC","denotations":[{"id":"T26740","span":{"begin":557,"end":561},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T26739","span":{"begin":475,"end":480},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}

{"project":"sentences","denotations":[{"id":"T26722","span":{"begin":462,"end":573},"obj":"Sentence"},{"id":"T26721","span":{"begin":16,"end":461},"obj":"Sentence"},{"id":"T26720","span":{"begin":0,"end":15},"obj":"Sentence"},{"id":"T337","span":{"begin":0,"end":15},"obj":"Sentence"},{"id":"T338","span":{"begin":16,"end":53},"obj":"Sentence"},{"id":"T339","span":{"begin":54,"end":461},"obj":"Sentence"},{"id":"T340","span":{"begin":462,"end":573},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}

{"project":"simple1","denotations":[{"id":"T26747","span":{"begin":511,"end":515},"obj":"Protein"},{"id":"T26746","span":{"begin":312,"end":317},"obj":"Protein"},{"id":"T26745","span":{"begin":285,"end":290},"obj":"Protein"},{"id":"T26744","span":{"begin":222,"end":226},"obj":"Protein"},{"id":"T26743","span":{"begin":170,"end":174},"obj":"Protein"},{"id":"T26742","span":{"begin":144,"end":148},"obj":"Protein"},{"id":"T26741","span":{"begin":118,"end":122},"obj":"Protein"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}

{"project":"BioNLP16_DUT","denotations":[{"id":"T26872","span":{"begin":511,"end":515},"obj":"Protein"},{"id":"T26871","span":{"begin":312,"end":317},"obj":"Protein"},{"id":"T26870","span":{"begin":285,"end":290},"obj":"Protein"},{"id":"T26869","span":{"begin":222,"end":226},"obj":"Protein"},{"id":"T26868","span":{"begin":170,"end":174},"obj":"Protein"},{"id":"T26867","span":{"begin":144,"end":148},"obj":"Protein"},{"id":"T26866","span":{"begin":118,"end":122},"obj":"Protein"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}

{"project":"BioNLP16_Messiy","denotations":[{"id":"T26893","span":{"begin":285,"end":290},"obj":"Protein"},{"id":"T26892","span":{"begin":222,"end":226},"obj":"Protein"},{"id":"T26891","span":{"begin":170,"end":174},"obj":"Protein"},{"id":"T26890","span":{"begin":144,"end":148},"obj":"Protein"},{"id":"T26889","span":{"begin":118,"end":122},"obj":"Protein"},{"id":"T26895","span":{"begin":511,"end":515},"obj":"Protein"},{"id":"T26894","span":{"begin":312,"end":317},"obj":"Protein"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}

{"project":"DLUT931","denotations":[{"id":"T26881","span":{"begin":511,"end":515},"obj":"Protein"},{"id":"T26880","span":{"begin":312,"end":317},"obj":"Protein"},{"id":"T26879","span":{"begin":285,"end":290},"obj":"Protein"},{"id":"T26878","span":{"begin":222,"end":226},"obj":"Protein"},{"id":"T26877","span":{"begin":170,"end":174},"obj":"Protein"},{"id":"T26876","span":{"begin":144,"end":148},"obj":"Protein"},{"id":"T26875","span":{"begin":118,"end":122},"obj":"Protein"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}

{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T26928","span":{"begin":112,"end":136},"obj":"Protein"},{"id":"T26927","span":{"begin":70,"end":72},"obj":"Entity"},{"id":"T26926","span":{"begin":475,"end":480},"obj":"Entity"},{"id":"T26925","span":{"begin":387,"end":416},"obj":"Entity"},{"id":"T26924","span":{"begin":54,"end":110},"obj":"Protein"},{"id":"T26923","span":{"begin":511,"end":546},"obj":"Protein"},{"id":"T26922","span":{"begin":387,"end":416},"obj":"Protein"},{"id":"T26921","span":{"begin":557,"end":571},"obj":"Entity"},{"id":"T26920","span":{"begin":499,"end":507},"obj":"Entity"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}

{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T27043","span":{"begin":572,"end":573},"obj":"."},{"id":"T27042","span":{"begin":571,"end":572},"obj":"-RRB-"},{"id":"T27041","span":{"begin":562,"end":571},"obj":"NN"},{"id":"T27040","span":{"begin":557,"end":561},"obj":"NN"},{"id":"T27039","span":{"begin":556,"end":557},"obj":"-LRB-"},{"id":"T27038","span":{"begin":553,"end":555},"obj":"NN"},{"id":"T27037","span":{"begin":550,"end":552},"obj":"CD"},{"id":"T27036","span":{"begin":547,"end":549},"obj":"CC"},{"id":"T27035","span":{"begin":545,"end":546},"obj":"-RRB-"},{"id":"T27034","span":{"begin":541,"end":545},"obj":"NN"},{"id":"T27033","span":{"begin":533,"end":540},"obj":"NNP"},{"id":"T27032","span":{"begin":530,"end":532},"obj":"CC"},{"id":"T27031","span":{"begin":526,"end":529},"obj":"NNP"},{"id":"T27030","span":{"begin":525,"end":526},"obj":"-LRB-"},{"id":"T27029","span":{"begin":522,"end":524},"obj":"NN"},{"id":"T27028","span":{"begin":520,"end":521},"obj":"CD"},{"id":"T27027","span":{"begin":516,"end":519},"obj":"IN"},{"id":"T27026","span":{"begin":511,"end":515},"obj":"NNP"},{"id":"T27025","span":{"begin":508,"end":510},"obj":"CC"},{"id":"T27024","span":{"begin":499,"end":507},"obj":"NNP"},{"id":"T27023","span":{"begin":494,"end":498},"obj":"IN"},{"id":"T27022","span":{"begin":486,"end":493},"obj":"VBN"},{"id":"T27021","span":{"begin":481,"end":485},"obj":"VBD"},{"id":"T27020","span":{"begin":475,"end":480},"obj":"NNS"},{"id":"T27019","span":{"begin":473,"end":474},"obj":","},{"id":"T27018","span":{"begin":471,"end":473},"obj":"NN"},{"id":"T27017","span":{"begin":468,"end":470},"obj":"CD"},{"id":"T27016","span":{"begin":462,"end":467},"obj":"IN"},{"id":"T27015","span":{"begin":460,"end":461},"obj":"."},{"id":"T27014","span":{"begin":445,"end":460},"obj":"NNS"},{"id":"T27013","span":{"begin":430,"end":442},"obj":"NN"},{"id":"T27012","span":{"begin":427,"end":429},"obj":"TO"},{"id":"T27011","span":{"begin":417,"end":426},"obj":"VBG"},{"id":"T27010","span":{"begin":415,"end":416},"obj":","},{"id":"T27009","span":{"begin":414,"end":415},"obj":"-RRB-"},{"id":"T27008","span":{"begin":404,"end":414},"obj":"NNP"},{"id":"T27007","span":{"begin":403,"end":404},"obj":"-LRB-"},{"id":"T27006","span":{"begin":395,"end":402},"obj":"NN"},{"id":"T27005","span":{"begin":387,"end":394},"obj":"NNP"},{"id":"T27004","span":{"begin":381,"end":386},"obj":"VBG"},{"id":"T27003","span":{"begin":369,"end":380},"obj":"VBN"},{"id":"T27002","span":{"begin":364,"end":368},"obj":"VBD"},{"id":"T27001","span":{"begin":358,"end":363},"obj":"NN"},{"id":"T27000","span":{"begin":356,"end":357},"obj":"."},{"id":"T26999","span":{"begin":355,"end":356},"obj":"-RRB-"},{"id":"T26998","span":{"begin":344,"end":355},"obj":"NN"},{"id":"T26997","span":{"begin":343,"end":344},"obj":"-LRB-"},{"id":"T26996","span":{"begin":339,"end":342},"obj":"NN"},{"id":"T26995","span":{"begin":333,"end":338},"obj":"NN"},{"id":"T26994","span":{"begin":331,"end":332},"obj":","},{"id":"T26993","span":{"begin":330,"end":331},"obj":"-RRB-"},{"id":"T26992","span":{"begin":319,"end":330},"obj":"NNP"},{"id":"T26991","span":{"begin":318,"end":319},"obj":"-LRB-"},{"id":"T26990","span":{"begin":312,"end":317},"obj":"NNP"},{"id":"T26989","span":{"begin":306,"end":311},"obj":"NN"},{"id":"T26988","span":{"begin":304,"end":305},"obj":","},{"id":"T26987","span":{"begin":303,"end":304},"obj":"-RRB-"},{"id":"T26986","span":{"begin":292,"end":303},"obj":"NNP"},{"id":"T26985","span":{"begin":291,"end":292},"obj":"-LRB-"},{"id":"T26984","span":{"begin":285,"end":290},"obj":"NNP"},{"id":"T26983","span":{"begin":279,"end":284},"obj":"NN"},{"id":"T26982","span":{"begin":277,"end":278},"obj":","},{"id":"T26981","span":{"begin":276,"end":277},"obj":"-RRB-"},{"id":"T26980","span":{"begin":262,"end":276},"obj":"NNP"},{"id":"T26979","span":{"begin":261,"end":262},"obj":"-LRB-"},{"id":"T26978","span":{"begin":253,"end":260},"obj":"NN"},{"id":"T26977","span":{"begin":242,"end":252},"obj":"JJ"},{"id":"T26976","span":{"begin":240,"end":241},"obj":","},{"id":"T26975","span":{"begin":239,"end":240},"obj":"-RRB-"},{"id":"T26974","span":{"begin":228,"end":239},"obj":"NNP"},{"id":"T26973","span":{"begin":227,"end":228},"obj":"-LRB-"},{"id":"T26972","span":{"begin":222,"end":226},"obj":"NNP"},{"id":"T26971","span":{"begin":216,"end":221},"obj":"NN"},{"id":"T26970","span":{"begin":214,"end":215},"obj":","},{"id":"T26969","span":{"begin":213,"end":214},"obj":"-RRB-"},{"id":"T26968","span":{"begin":202,"end":213},"obj":"NNP"},{"id":"T26967","span":{"begin":201,"end":202},"obj":"-LRB-"},{"id":"T26966","span":{"begin":196,"end":200},"obj":"NNP"},{"id":"T26965","span":{"begin":190,"end":195},"obj":"NN"},{"id":"T26964","span":{"begin":188,"end":189},"obj":","},{"id":"T26963","span":{"begin":187,"end":188},"obj":"-RRB-"},{"id":"T26962","span":{"begin":176,"end":187},"obj":"NNP"},{"id":"T26961","span":{"begin":175,"end":176},"obj":"-LRB-"},{"id":"T26960","span":{"begin":170,"end":174},"obj":"NNP"},{"id":"T26959","span":{"begin":164,"end":169},"obj":"NN"},{"id":"T26958","span":{"begin":162,"end":163},"obj":","},{"id":"T26957","span":{"begin":161,"end":162},"obj":"-RRB-"},{"id":"T26956","span":{"begin":150,"end":161},"obj":"NNP"},{"id":"T26955","span":{"begin":149,"end":150},"obj":"-LRB-"},{"id":"T26954","span":{"begin":144,"end":148},"obj":"NNP"},{"id":"T26953","span":{"begin":138,"end":143},"obj":"NN"},{"id":"T26952","span":{"begin":136,"end":137},"obj":","},{"id":"T26951","span":{"begin":135,"end":136},"obj":"-RRB-"},{"id":"T26950","span":{"begin":124,"end":135},"obj":"NNP"},{"id":"T26949","span":{"begin":123,"end":124},"obj":"-LRB-"},{"id":"T26948","span":{"begin":118,"end":122},"obj":"NNP"},{"id":"T26947","span":{"begin":112,"end":117},"obj":"NN"},{"id":"T26946","span":{"begin":110,"end":111},"obj":","},{"id":"T26945","span":{"begin":109,"end":110},"obj":"-RRB-"},{"id":"T26944","span":{"begin":98,"end":109},"obj":"NN"},{"id":"T26943","span":{"begin":94,"end":97},"obj":"CC"},{"id":"T26942","span":{"begin":82,"end":93},"obj":"NN"},{"id":"T26941","span":{"begin":81,"end":82},"obj":"-LRB-"},{"id":"T26940","span":{"begin":73,"end":80},"obj":"NN"},{"id":"T26939","span":{"begin":70,"end":72},"obj":"NNP"},{"id":"T26938","span":{"begin":60,"end":69},"obj":"JJ"},{"id":"T26937","span":{"begin":54,"end":59},"obj":"NNP"},{"id":"T26936","span":{"begin":52,"end":53},"obj":"."},{"id":"T26935","span":{"begin":43,"end":52},"obj":"NNP"},{"id":"T26934","span":{"begin":38,"end":42},"obj":"IN"},{"id":"T26933","span":{"begin":28,"end":37},"obj":"VBN"},{"id":"T26932","span":{"begin":23,"end":27},"obj":"VBD"},{"id":"T26931","span":{"begin":16,"end":22},"obj":"NNPS"},{"id":"T26930","span":{"begin":6,"end":15},"obj":"NNP"},{"id":"T26929","span":{"begin":0,"end":5},"obj":"NNP"}],"relations":[{"id":"R18486","pred":"compound","subj":"T26929","obj":"T26931"},{"id":"R18487","pred":"compound","subj":"T26930","obj":"T26931"},{"id":"R18488","pred":"nsubjpass","subj":"T26931","obj":"T26933"},{"id":"R18489","pred":"auxpass","subj":"T26932","obj":"T26933"},{"id":"R18490","pred":"ROOT","subj":"T26933","obj":"T26933"},{"id":"R18491","pred":"prep","subj":"T26934","obj":"T26933"},{"id":"R18492","pred":"pobj","subj":"T26935","obj":"T26934"},{"id":"R18493","pred":"punct","subj":"T26936","obj":"T26933"},{"id":"R18494","pred":"nmod","subj":"T26937","obj":"T26940"},{"id":"R18495","pred":"amod","subj":"T26938","obj":"T26940"},{"id":"R18496","pred":"compound","subj":"T26939","obj":"T26940"},{"id":"R18497","pred":"ROOT","subj":"T26940","obj":"T26940"},{"id":"R18498","pred":"punct","subj":"T26941","obj":"T26942"},{"id":"R18499","pred":"appos","subj":"T26942","obj":"T26940"},{"id":"R18500","pred":"cc","subj":"T26943","obj":"T26942"},{"id":"R18501","pred":"conj","subj":"T26944","obj":"T26942"},{"id":"R18502","pred":"punct","subj":"T26945","obj":"T26944"},{"id":"R18503","pred":"punct","subj":"T26946","obj":"T26942"},{"id":"R18504","pred":"compound","subj":"T26947","obj":"T26948"},{"id":"R18505","pred":"appos","subj":"T26948","obj":"T26942"},{"id":"R18506","pred":"punct","subj":"T26949","obj":"T26950"},{"id":"R18507","pred":"appos","subj":"T26950","obj":"T26948"},{"id":"R18508","pred":"punct","subj":"T26951","obj":"T26950"},{"id":"R18509","pred":"punct","subj":"T26952","obj":"T26948"},{"id":"R18510","pred":"compound","subj":"T26953","obj":"T26954"},{"id":"R18511","pred":"appos","subj":"T26954","obj":"T26948"},{"id":"R18512","pred":"punct","subj":"T26955","obj":"T26956"},{"id":"R18513","pred":"appos","subj":"T26956","obj":"T26954"},{"id":"R18514","pred":"punct","subj":"T26957","obj":"T26956"},{"id":"R18515","pred":"punct","subj":"T26958","obj":"T26954"},{"id":"R18516","pred":"compound","subj":"T26959","obj":"T26960"},{"id":"R18517","pred":"conj","subj":"T26960","obj":"T26954"},{"id":"R18518","pred":"punct","subj":"T26961","obj":"T26962"},{"id":"R18519","pred":"appos","subj":"T26962","obj":"T26960"},{"id":"R18520","pred":"punct","subj":"T26963","obj":"T26962"},{"id":"R18521","pred":"punct","subj":"T26964","obj":"T26960"},{"id":"R18522","pred":"compound","subj":"T26965","obj":"T26966"},{"id":"R18523","pred":"conj","subj":"T26966","obj":"T26960"},{"id":"R18524","pred":"punct","subj":"T26967","obj":"T26968"},{"id":"R18525","pred":"appos","subj":"T26968","obj":"T26966"},{"id":"R18526","pred":"punct","subj":"T26969","obj":"T26966"},{"id":"R18527","pred":"punct","subj":"T26970","obj":"T26966"},{"id":"R18528","pred":"compound","subj":"T26971","obj":"T26972"},{"id":"R18529","pred":"conj","subj":"T26972","obj":"T26966"},{"id":"R18530","pred":"punct","subj":"T26973","obj":"T26974"},{"id":"R18531","pred":"appos","subj":"T26974","obj":"T26972"},{"id":"R18532","pred":"punct","subj":"T26975","obj":"T26972"},{"id":"R18533","pred":"punct","subj":"T26976","obj":"T26972"},{"id":"R18534","pred":"amod","subj":"T26977","obj":"T26978"},{"id":"R18535","pred":"appos","subj":"T26978","obj":"T26972"},{"id":"R18536","pred":"punct","subj":"T26979","obj":"T26980"},{"id":"R18537","pred":"appos","subj":"T26980","obj":"T26972"},{"id":"R18538","pred":"punct","subj":"T26981","obj":"T26980"},{"id":"R18539","pred":"punct","subj":"T26982","obj":"T26972"},{"id":"R18540","pred":"compound","subj":"T26983","obj":"T26984"},{"id":"R18541","pred":"conj","subj":"T26984","obj":"T26972"},{"id":"R18570","pred":"poss","subj":"T27013","obj":"T27014"},{"id":"R18571","pred":"pobj","subj":"T27014","obj":"T27012"},{"id":"R18572","pred":"punct","subj":"T27015","obj":"T27003"},{"id":"R18573","pred":"prep","subj":"T27016","obj":"T27022"},{"id":"R18574","pred":"nummod","subj":"T27017","obj":"T27018"},{"id":"R18575","pred":"pobj","subj":"T27018","obj":"T27016"},{"id":"R18576","pred":"punct","subj":"T27019","obj":"T27022"},{"id":"R18577","pred":"nsubjpass","subj":"T27020","obj":"T27022"},{"id":"R18578","pred":"auxpass","subj":"T27021","obj":"T27022"},{"id":"R18579","pred":"ROOT","subj":"T27022","obj":"T27022"},{"id":"R18580","pred":"prep","subj":"T27023","obj":"T27022"},{"id":"R18581","pred":"pobj","subj":"T27024","obj":"T27023"},{"id":"R18582","pred":"cc","subj":"T27025","obj":"T27024"},{"id":"R18583","pred":"conj","subj":"T27026","obj":"T27024"},{"id":"R18584","pred":"prep","subj":"T27027","obj":"T27022"},{"id":"R18585","pred":"nummod","subj":"T27028","obj":"T27029"},{"id":"R18586","pred":"pobj","subj":"T27029","obj":"T27027"},{"id":"R18587","pred":"punct","subj":"T27030","obj":"T27029"},{"id":"R18588","pred":"appos","subj":"T27031","obj":"T27029"},{"id":"R18589","pred":"cc","subj":"T27032","obj":"T27031"},{"id":"R18590","pred":"compound","subj":"T27033","obj":"T27034"},{"id":"R18591","pred":"conj","subj":"T27034","obj":"T27031"},{"id":"R18592","pred":"punct","subj":"T27035","obj":"T27034"},{"id":"R18593","pred":"cc","subj":"T27036","obj":"T27034"},{"id":"R18594","pred":"nummod","subj":"T27037","obj":"T27038"},{"id":"R18595","pred":"conj","subj":"T27038","obj":"T27034"},{"id":"R18596","pred":"punct","subj":"T27039","obj":"T27041"},{"id":"R18597","pred":"compound","subj":"T27040","obj":"T27041"},{"id":"R18598","pred":"appos","subj":"T27041","obj":"T27038"},{"id":"R18599","pred":"punct","subj":"T27042","obj":"T27038"},{"id":"R18600","pred":"punct","subj":"T27043","obj":"T27022"},{"id":"R18567","pred":"punct","subj":"T27010","obj":"T27003"},{"id":"R18568","pred":"prep","subj":"T27011","obj":"T27003"},{"id":"R18569","pred":"prep","subj":"T27012","obj":"T27011"},{"id":"R18542","pred":"punct","subj":"T26985","obj":"T26986"},{"id":"R18543","pred":"appos","subj":"T26986","obj":"T26984"},{"id":"R18544","pred":"punct","subj":"T26987","obj":"T26984"},{"id":"R18545","pred":"punct","subj":"T26988","obj":"T26984"},{"id":"R18546","pred":"compound","subj":"T26989","obj":"T26990"},{"id":"R18547","pred":"conj","subj":"T26990","obj":"T26984"},{"id":"R18548","pred":"punct","subj":"T26991","obj":"T26992"},{"id":"R18549","pred":"appos","subj":"T26992","obj":"T26990"},{"id":"R18550","pred":"punct","subj":"T26993","obj":"T26992"},{"id":"R18551","pred":"punct","subj":"T26994","obj":"T26990"},{"id":"R18552","pred":"compound","subj":"T26995","obj":"T26996"},{"id":"R18553","pred":"appos","subj":"T26996","obj":"T26990"},{"id":"R18554","pred":"punct","subj":"T26997","obj":"T26998"},{"id":"R18555","pred":"parataxis","subj":"T26998","obj":"T26996"},{"id":"R18556","pred":"punct","subj":"T26999","obj":"T26998"},{"id":"R18557","pred":"punct","subj":"T27000","obj":"T26940"},{"id":"R18558","pred":"nsubjpass","subj":"T27001","obj":"T27003"},{"id":"R18559","pred":"auxpass","subj":"T27002","obj":"T27003"},{"id":"R18560","pred":"ROOT","subj":"T27003","obj":"T27003"},{"id":"R18561","pred":"advcl","subj":"T27004","obj":"T27003"},{"id":"R18562","pred":"compound","subj":"T27005","obj":"T27006"},{"id":"R18563","pred":"dobj","subj":"T27006","obj":"T27004"},{"id":"R18564","pred":"punct","subj":"T27007","obj":"T27006"},{"id":"R18565","pred":"appos","subj":"T27008","obj":"T27006"},{"id":"R18566","pred":"punct","subj":"T27009","obj":"T27008"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}

{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T26907","span":{"begin":499,"end":515},"obj":"Protein"},{"id":"T26906","span":{"begin":344,"end":355},"obj":"Entity"},{"id":"T26905","span":{"begin":253,"end":260},"obj":"Regulation"},{"id":"T26904","span":{"begin":202,"end":213},"obj":"Entity"},{"id":"T26903","span":{"begin":82,"end":93},"obj":"Entity"},{"id":"T26902","span":{"begin":312,"end":317},"obj":"Protein"},{"id":"T26901","span":{"begin":285,"end":290},"obj":"Protein"},{"id":"T26900","span":{"begin":222,"end":226},"obj":"Protein"},{"id":"T26899","span":{"begin":170,"end":174},"obj":"Protein"},{"id":"T26898","span":{"begin":144,"end":148},"obj":"Protein"},{"id":"T26897","span":{"begin":118,"end":122},"obj":"Protein"},{"id":"T26896","span":{"begin":54,"end":80},"obj":"Protein"}],"relations":[{"id":"R18476","pred":"partOf","subj":"T26896","obj":"T26903"},{"id":"R18477","pred":"themeOf","subj":"T26897","obj":"T26905"},{"id":"R18478","pred":"partOf","subj":"T26897","obj":"T26903"},{"id":"R18479","pred":"partOf","subj":"T26897","obj":"T26904"},{"id":"R18480","pred":"partOf","subj":"T26897","obj":"T26906"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}

{"project":"test3","denotations":[{"id":"T26719","span":{"begin":511,"end":515},"obj":"Protein"},{"id":"T26718","span":{"begin":312,"end":317},"obj":"Protein"},{"id":"T26717","span":{"begin":285,"end":290},"obj":"Protein"},{"id":"T26716","span":{"begin":222,"end":226},"obj":"Protein"},{"id":"T26715","span":{"begin":170,"end":174},"obj":"Protein"},{"id":"T26714","span":{"begin":144,"end":148},"obj":"Protein"},{"id":"T26713","span":{"begin":118,"end":122},"obj":"Protein"},{"id":"T26712","span":{"begin":511,"end":515},"obj":"Protein"},{"id":"T26711","span":{"begin":312,"end":317},"obj":"Protein"},{"id":"T26710","span":{"begin":285,"end":290},"obj":"Protein"},{"id":"T26709","span":{"begin":222,"end":226},"obj":"Protein"},{"id":"T26708","span":{"begin":170,"end":174},"obj":"Protein"},{"id":"T26707","span":{"begin":144,"end":148},"obj":"Protein"},{"id":"T26706","span":{"begin":118,"end":122},"obj":"Protein"}],"text":"siRNA Knockdown\nsiRNAs were purchased from Dharmacon. Mouse ribosomal S6 protein (L-040893-00 and L-045791-00), mouse Akt1 (L-040709-00), mouse Akt2 (L-040782-00), mouse Akt3 (L-040891-00), mouse mTOR (L-065427-00), mouse PDK1 (L-040658-00), non-coding control (D-001810-10-05), mouse Mapk8 (J-040128-05), mouse Mapk9 (J-040134-05), mouse Jun (L-043776-00). siRNA were transfected using RNAiMAX reagent (Invitrogen), according to manufacturer’s recommendations. After 72 hr, cells were treated with zVAD.fmk or TNFα for 9 hr (RNA or Western blot) or 24 hr (cell viability)."}