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PMC:3585731 / 53302-53889 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T26582 577-586 NN denotes molecules
T26581 571-576 JJ denotes small
T26580 567-570 DT denotes the
T26579 564-566 IN denotes of
T26578 555-563 NN denotes toxicity
T26577 542-554 JJ denotes non-specific
T26576 539-541 IN denotes of
T26575 531-538 NN denotes effects
T26574 522-530 JJ denotes possible
T26573 518-521 DT denotes the
T26572 510-517 VB denotes exclude
T26571 507-509 TO denotes to
T26570 499-506 VB denotes plotted
T26569 495-498 CC denotes and
T26568 484-494 VB denotes determined
T26567 480-483 VB denotes was
T26566 478-479 -COMMA- denotes ,
T26565 473-478 NN denotes cells
T26564 456-472 JJ denotes compound-treated
T26563 448-455 NN denotes control
T26562 444-447 DT denotes the
T26561 441-443 TO denotes to
T26560 432-440 JJ denotes relative
T26559 423-431 NN denotes compound
T26558 419-422 DT denotes the
T26557 414-418 IN denotes with
T26556 406-413 VB denotes treated
T26555 402-405 CC denotes and
T26554 390-401 NN denotes necroptosis
T26553 382-389 VB denotes undergo
T26552 379-381 TO denotes to
T26551 371-378 VB denotes induced
T26550 369-370 -COMMA- denotes ,
T26549 364-369 NN denotes cells
T26548 361-363 IN denotes of
T26547 351-360 NN denotes viability
T26546 342-350 JJ denotes Relative
T26545 339-340 NN denotes %
T26544 336-339 CD denotes 100
T26543 333-335 IN denotes as
T26542 329-332 VB denotes set
T26541 325-328 VB denotes was
T26540 319-324 NN denotes cells
T26539 309-318 JJ denotes untreated
T26538 301-308 NN denotes control
T26537 297-300 DT denotes the
T26536 294-296 IN denotes of
T26535 284-293 NN denotes Viability
T26534 272-282 VB denotes triplicate
T26533 269-271 CC denotes or
T26532 259-268 NN denotes duplicate
T26531 256-258 IN denotes in
T26530 246-255 VB denotes performed
T26529 241-245 VB denotes were
T26528 229-240 NN denotes Experiments
T26527 226-227 -RRB- denotes )
T26526 219-226 NNP denotes Promega
T26525 218-219 -LRB- denotes (
T26524 212-217 NNP denotes Assay
T26523 202-211 NNP denotes Viability
T26522 197-201 NNP denotes Cell
T26521 183-196 NNP denotes CellTiter-Glo
T26520 177-182 VB denotes using
T26519 166-176 VB denotes determined
T26518 162-165 VB denotes was
T26517 152-161 NN denotes viability
T26516 147-151 NN denotes Cell
T26515 134-145 NN denotes experiments
T26514 129-133 NN denotes blot
T26513 121-128 JJ denotes western
T26512 117-120 IN denotes for
T26511 107-116 VB denotes described
T26510 104-106 IN denotes as
T26509 96-103 VB denotes treated
T26508 92-95 CC denotes and
T26507 81-91 NN denotes cells/well
T26506 75-80 CD denotes 1×104
T26505 72-74 IN denotes of
T26504 64-71 NN denotes density
T26503 60-63 DT denotes the
T26502 57-59 IN denotes at
T26501 50-56 VB denotes plates
T26500 45-49 RB denotes well
T26499 42-44 CD denotes 96
T26498 35-41 NN denotes bottom
T26497 29-34 JJ denotes clear
T26496 23-28 JJ denotes white
T26495 18-22 IN denotes into
T26494 11-17 VB denotes seeded
T26493 6-10 VB denotes were
T26492 0-5 NN denotes Cells
R18151 T26492 T26493 arg1Of Cells,were
R18152 T26492 T26494 arg2Of Cells,seeded
R18153 T26492 T26509 arg2Of Cells,treated
R18154 T26494 T26495 arg1Of seeded,into
R18155 T26494 T26502 arg1Of seeded,at
R18156 T26494 T26508 arg1Of seeded,and
R18157 T26498 T26495 arg2Of bottom,into
R18158 T26498 T26496 arg1Of bottom,white
R18159 T26498 T26497 arg1Of bottom,clear
R18160 T26498 T26501 arg2Of bottom,plates
R18161 T26499 T26501 arg1Of 96,plates
R18162 T26501 T26500 arg1Of plates,well
R18163 T26504 T26502 arg2Of density,at
R18164 T26504 T26503 arg1Of density,the
R18165 T26504 T26505 arg1Of density,of
R18166 T26507 T26505 arg2Of cells/well,of
R18167 T26507 T26506 arg1Of cells/well,1×104
R18168 T26508 T26493 arg2Of and,were
R18169 T26509 T26508 arg2Of treated,and
R18170 T26509 T26510 arg1Of treated,as
R18171 T26511 T26510 arg2Of described,as
R18172 T26511 T26512 arg1Of described,for
R18173 T26515 T26512 arg2Of experiments,for
R18174 T26515 T26513 arg1Of experiments,western
R18175 T26515 T26514 arg1Of experiments,blot
R18176 T26517 T26516 arg1Of viability,Cell
R18177 T26517 T26518 arg1Of viability,was
R18178 T26517 T26519 arg2Of viability,determined
R18179 T26519 T26518 arg2Of determined,was
R18180 T26520 T26519 arg3Of using,determined
R18181 T26524 T26520 arg2Of Assay,using
R18182 T26524 T26521 arg1Of Assay,CellTiter-Glo
R18183 T26524 T26522 arg1Of Assay,Cell
R18184 T26524 T26523 arg1Of Assay,Viability
R18185 T26524 T26525 arg1Of Assay,(
R18186 T26526 T26525 arg2Of Promega,(
R18187 T26527 T26525 arg3Of ),(
R18188 T26528 T26529 arg1Of Experiments,were
R18189 T26528 T26530 arg2Of Experiments,performed
R18190 T26528 T26534 arg1Of Experiments,triplicate
R18191 T26530 T26529 arg2Of performed,were
R18192 T26530 T26531 arg1Of performed,in
R18193 T26530 T26533 arg1Of performed,or
R18194 T26532 T26531 arg2Of duplicate,in
R18195 T26534 T26533 arg2Of triplicate,or
R18196 T26535 T26536 arg1Of Viability,of
R18197 T26535 T26541 arg1Of Viability,was
R18198 T26535 T26542 arg2Of Viability,set
R18199 T26540 T26536 arg2Of cells,of
R18200 T26540 T26537 arg1Of cells,the
R18201 T26540 T26538 arg1Of cells,control
R18202 T26540 T26539 arg1Of cells,untreated
R18203 T26542 T26541 arg2Of set,was
R18204 T26542 T26543 arg1Of set,as
R18205 T26545 T26543 arg2Of %,as
R18206 T26545 T26544 arg1Of %,100
R18207 T26547 T26546 arg1Of viability,Relative
R18208 T26547 T26548 arg1Of viability,of
R18209 T26547 T26551 arg1Of viability,induced
R18210 T26547 T26553 arg1Of viability,undergo
R18211 T26547 T26556 arg2Of viability,treated
R18212 T26547 T26567 arg1Of viability,was
R18213 T26547 T26568 arg2Of viability,determined
R18214 T26547 T26570 arg2Of viability,plotted
R18215 T26547 T26572 arg1Of viability,exclude
R18216 T26549 T26548 arg2Of cells,of
R18217 T26551 T26552 modOf induced,to
R18218 T26551 T26566 arg1Of induced,","
R18219 T26553 T26555 arg1Of undergo,and
R18220 T26554 T26553 arg2Of necroptosis,undergo
R18221 T26555 T26552 arg1Of and,to
R18222 T26556 T26555 arg2Of treated,and
R18223 T26556 T26557 arg1Of treated,with
R18224 T26559 T26557 arg2Of compound,with
R18225 T26559 T26558 arg1Of compound,the
R18226 T26559 T26560 arg1Of compound,relative
R18227 T26560 T26561 arg1Of relative,to
R18228 T26565 T26561 arg2Of cells,to
R18229 T26565 T26562 arg1Of cells,the
R18230 T26565 T26563 arg1Of cells,control
R18231 T26565 T26564 arg1Of cells,compound-treated
R18232 T26566 T26550 arg1Of ",",","
R18233 T26568 T26569 arg1Of determined,and
R18234 T26569 T26566 arg2Of and,","
R18235 T26569 T26567 arg2Of and,was
R18236 T26570 T26569 arg2Of plotted,and
R18237 T26572 T26570 arg3Of exclude,plotted
R18238 T26572 T26571 arg1Of exclude,to
R18239 T26575 T26572 arg2Of effects,exclude
R18240 T26575 T26573 arg1Of effects,the
R18241 T26575 T26574 arg1Of effects,possible
R18242 T26575 T26576 arg1Of effects,of
R18243 T26578 T26576 arg2Of toxicity,of
R18244 T26578 T26577 arg1Of toxicity,non-specific
R18245 T26578 T26579 arg1Of toxicity,of
R18246 T26582 T26579 arg2Of molecules,of
R18247 T26582 T26580 arg1Of molecules,the
R18248 T26582 T26581 arg1Of molecules,small

GO-BP

Id Subject Object Predicate Lexical cue
T26482 390-401 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T26481 390-401 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-CC

Id Subject Object Predicate Lexical cue
T26488 473-478 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T26487 364-369 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T26486 319-324 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T26485 197-201 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T26484 147-151 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell

sentences

Id Subject Object Predicate Lexical cue
T26480 342-587 Sentence denotes Relative viability of cells, induced to undergo necroptosis and treated with the compound relative to the control compound-treated cells, was determined and plotted to exclude the possible effects of non-specific toxicity of the small molecules.
T26479 284-341 Sentence denotes Viability of the control untreated cells was set as 100%.
T26478 229-283 Sentence denotes Experiments were performed in duplicate or triplicate.
T26477 147-228 Sentence denotes Cell viability was determined using CellTiter-Glo Cell Viability Assay (Promega).
T26476 0-146 Sentence denotes Cells were seeded into white clear bottom 96 well plates at the density of 1×104 cells/well and treated as described for western blot experiments.
T332 0-146 Sentence denotes Cells were seeded into white clear bottom 96 well plates at the density of 1×104 cells/well and treated as described for western blot experiments.
T333 147-228 Sentence denotes Cell viability was determined using CellTiter-Glo Cell Viability Assay (Promega).
T334 229-283 Sentence denotes Experiments were performed in duplicate or triplicate.
T335 284-341 Sentence denotes Viability of the control untreated cells was set as 100%.
T336 342-587 Sentence denotes Relative viability of cells, induced to undergo necroptosis and treated with the compound relative to the control compound-treated cells, was determined and plotted to exclude the possible effects of non-specific toxicity of the small molecules.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T26691 567-586 Entity denotes the small molecules
T26690 147-161 Entity denotes Cell viability
T26689 183-227 Entity denotes CellTiter-Glo Cell Viability Assay (Promega)
T26688 473-478 Entity denotes cells
T26687 361-369 Entity denotes of cells
T26686 294-324 Entity denotes of the control untreated cells
T26684 542-586 Entity denotes non-specific toxicity of the small molecules

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T26683 586-587 . denotes .
T26682 577-586 NNS denotes molecules
T26681 571-576 JJ denotes small
T26680 567-570 DT denotes the
T26679 564-566 IN denotes of
T26678 555-563 NN denotes toxicity
T26677 542-554 JJ denotes non-specific
T26676 539-541 IN denotes of
T26675 531-538 NNS denotes effects
T26674 522-530 JJ denotes possible
T26673 518-521 DT denotes the
T26672 510-517 VB denotes exclude
T26671 507-509 TO denotes to
T26670 499-506 VBN denotes plotted
T26669 495-498 CC denotes and
T26668 484-494 VBN denotes determined
T26667 480-483 VBD denotes was
T26666 478-479 , denotes ,
T26665 473-478 NNS denotes cells
T26664 456-472 JJ denotes compound-treated
T26663 448-455 NN denotes control
T26662 444-447 DT denotes the
T26661 441-443 TO denotes to
T26660 432-440 JJ denotes relative
T26659 423-431 NN denotes compound
T26658 419-422 DT denotes the
T26657 414-418 IN denotes with
T26656 406-413 VBN denotes treated
T26655 402-405 CC denotes and
T26654 390-401 NN denotes necroptosis
T26653 382-389 VB denotes undergo
T26652 379-381 TO denotes to
T26651 371-378 VBD denotes induced
T26650 369-370 , denotes ,
T26649 364-369 NNS denotes cells
T26648 361-363 IN denotes of
T26647 351-360 NN denotes viability
T26646 342-350 JJ denotes Relative
T26645 340-341 . denotes .
T26644 339-340 NN denotes %
T26643 336-339 CD denotes 100
T26630 259-268 VBP denotes duplicate
T26629 256-258 IN denotes in
T26628 246-255 VBN denotes performed
T26627 241-245 VBD denotes were
T26626 229-240 NNS denotes Experiments
T26625 227-228 . denotes .
T26624 226-227 -RRB- denotes )
T26623 219-226 NNP denotes Promega
T26622 218-219 -LRB- denotes (
T26621 212-217 NNP denotes Assay
T26620 202-211 NNP denotes Viability
T26619 197-201 NNP denotes Cell
T26618 183-196 NNP denotes CellTiter-Glo
T26617 177-182 VBG denotes using
T26616 166-176 VBN denotes determined
T26615 162-165 VBD denotes was
T26614 152-161 NN denotes viability
T26613 147-151 NNP denotes Cell
T26612 145-146 . denotes .
T26611 134-145 NNS denotes experiments
T26610 129-133 NN denotes blot
T26609 121-128 JJ denotes western
T26608 117-120 IN denotes for
T26607 107-116 VBN denotes described
T26606 104-106 IN denotes as
T26605 96-103 VBN denotes treated
T26604 92-95 CC denotes and
T26603 81-91 NN denotes cells/well
T26602 77-80 CD denotes 104
T26601 76-77 CD denotes ×
T26600 75-76 CD denotes 1
T26599 72-74 IN denotes of
T26598 64-71 NN denotes density
T26597 60-63 DT denotes the
T26596 57-59 IN denotes at
T26595 50-56 VBZ denotes plates
T26594 45-49 RB denotes well
T26593 42-44 CD denotes 96
T26592 35-41 NN denotes bottom
T26591 29-34 JJ denotes clear
T26590 23-28 JJ denotes white
T26589 18-22 IN denotes into
T26588 11-17 VBN denotes seeded
T26587 6-10 VBD denotes were
T26586 0-5 NNS denotes Cells
T26642 333-335 IN denotes as
T26641 329-332 VBN denotes set
T26640 325-328 VBD denotes was
T26639 319-324 NNS denotes cells
T26638 309-318 JJ denotes untreated
T26637 301-308 NN denotes control
T26636 297-300 DT denotes the
T26635 294-296 IN denotes of
T26634 284-293 NN denotes Viability
T26633 282-283 . denotes .
T26632 272-282 VBP denotes triplicate
T26631 269-271 CC denotes or
R18252 T26586 T26588 nsubjpass Cells,seeded
R18253 T26587 T26588 auxpass were,seeded
R18254 T26588 T26588 ROOT seeded,seeded
R18255 T26589 T26588 prep into,seeded
R18256 T26590 T26592 amod white,bottom
R18257 T26591 T26592 amod clear,bottom
R18258 T26592 T26589 pobj bottom,into
R18259 T26593 T26592 nummod 96,bottom
R18260 T26594 T26595 intj well,plates
R18261 T26595 T26588 conj plates,seeded
R18262 T26596 T26595 prep at,plates
R18263 T26597 T26598 det the,density
R18264 T26598 T26596 pobj density,at
R18265 T26599 T26598 prep of,density
R18266 T26600 T26603 nummod 1,cells/well
R18267 T26601 T26603 nummod ×,cells/well
R18268 T26602 T26603 nummod 104,cells/well
R18269 T26603 T26599 pobj cells/well,of
R18270 T26604 T26595 cc and,plates
R18271 T26605 T26595 conj treated,plates
R18272 T26606 T26607 mark as,described
R18273 T26607 T26595 advcl described,plates
R18274 T26608 T26607 prep for,described
R18275 T26609 T26611 amod western,experiments
R18276 T26610 T26611 compound blot,experiments
R18277 T26611 T26608 pobj experiments,for
R18278 T26612 T26588 punct .,seeded
R18279 T26613 T26614 compound Cell,viability
R18280 T26614 T26616 nsubjpass viability,determined
R18281 T26615 T26616 auxpass was,determined
R18282 T26616 T26616 ROOT determined,determined
R18283 T26617 T26616 advcl using,determined
R18284 T26618 T26621 compound CellTiter-Glo,Assay
R18285 T26619 T26621 compound Cell,Assay
R18286 T26620 T26621 compound Viability,Assay
R18287 T26621 T26617 dobj Assay,using
R18288 T26622 T26621 punct (,Assay
R18289 T26623 T26621 appos Promega,Assay
R18290 T26624 T26621 punct ),Assay
R18291 T26625 T26616 punct .,determined
R18293 T26627 T26628 auxpass were,performed
R18294 T26628 T26628 ROOT performed,performed
R18295 T26629 T26628 prep in,performed
R18296 T26630 T26629 pobj duplicate,in
R18297 T26631 T26630 cc or,duplicate
R18298 T26632 T26630 conj triplicate,duplicate
R18299 T26633 T26628 punct .,performed
R18300 T26634 T26641 nsubjpass Viability,set
R18301 T26635 T26634 prep of,Viability
R18302 T26636 T26637 det the,control
R18303 T26637 T26639 amod control,cells
R18304 T26638 T26639 amod untreated,cells
R18305 T26639 T26635 pobj cells,of
R18306 T26640 T26641 auxpass was,set
R18307 T26641 T26641 ROOT set,set
R18308 T26642 T26641 prep as,set
R18309 T26643 T26644 nummod 100,%
R18310 T26644 T26642 pobj %,as
R18311 T26645 T26641 punct .,set
R18312 T26646 T26647 amod Relative,viability
R18313 T26647 T26651 nsubj viability,induced
R18314 T26648 T26647 prep of,viability
R18315 T26649 T26648 pobj cells,of
R18316 T26650 T26651 punct ",",induced
R18317 T26651 T26651 ROOT induced,induced
R18318 T26652 T26653 aux to,undergo
R18319 T26653 T26651 xcomp undergo,induced
R18320 T26654 T26653 dobj necroptosis,undergo
R18321 T26655 T26651 cc and,induced
R18322 T26656 T26651 conj treated,induced
R18323 T26657 T26656 prep with,treated
R18324 T26658 T26659 det the,compound
R18325 T26659 T26657 pobj compound,with
R18326 T26660 T26659 amod relative,compound
R18327 T26661 T26660 prep to,relative
R18328 T26662 T26663 det the,control
R18329 T26663 T26661 pobj control,to
R18330 T26664 T26665 amod compound-treated,cells
R18331 T26665 T26659 appos cells,compound
R18332 T26666 T26668 punct ",",determined
R18333 T26667 T26668 auxpass was,determined
R18334 T26668 T26651 conj determined,induced
R18335 T26669 T26668 cc and,determined
R18336 T26670 T26668 conj plotted,determined
R18337 T26671 T26672 aux to,exclude
R18338 T26672 T26670 xcomp exclude,plotted
R18339 T26673 T26675 det the,effects
R18340 T26674 T26675 amod possible,effects
R18341 T26675 T26672 dobj effects,exclude
R18342 T26676 T26675 prep of,effects
R18343 T26677 T26678 amod non-specific,toxicity
R18344 T26678 T26676 pobj toxicity,of
R18345 T26679 T26678 prep of,toxicity
R18346 T26680 T26682 det the,molecules
R18347 T26681 T26682 amod small,molecules
R18348 T26682 T26679 pobj molecules,of
R18349 T26683 T26651 punct .,induced
R18292 T26626 T26628 nsubjpass Experiments,performed