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PMC:3585731 / 532-808 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T26 150-165 Phosphorylation denotes phosphorylation
T25 120-129 Regulation denotes dependent
T24 100-109 Positive_regulation denotes activated
T23 61-71 Gene_expression denotes production
T22 48-52 Regulation denotes role
T16 115-119 Protein denotes RIP1
T15 56-60 Protein denotes TNFα
R5 T23 T22 themeOf production,role
R2 T15 T23 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T266 271-274 CC denotes and
T265 263-270 NN denotes factors
T264 256-262 NN denotes growth
T263 251-255 DT denotes both
T262 246-250 IN denotes from
T261 239-245 NN denotes inputs
T260 229-238 NN denotes signaling
T259 217-228 JJ denotes independent
T258 208-216 VB denotes requires
T257 197-207 NN denotes activation
T256 192-196 DT denotes this
T255 190-191 -COMMA- denotes ,
T254 185-190 NN denotes cells
T253 180-184 NN denotes L929
T252 177-179 IN denotes In
T251 169-175 NN denotes Thr308
T250 166-168 IN denotes on
T249 150-165 NN denotes phosphorylation
T248 146-149 PRP-DOLLAR- denotes its
T247 138-145 IN denotes through
T246 130-137 NN denotes fashion
T245 120-129 JJ denotes dependent
T244 115-119 NN denotes RIP1
T243 113-114 DT denotes a
T242 110-112 IN denotes in
T241 100-109 VB denotes activated
T240 97-99 VB denotes is
T239 93-96 NN denotes Akt
T238 91-92 -COMMA- denotes ,
T237 80-91 NN denotes necroptosis
T236 73-79 IN denotes During
T235 61-71 NN denotes production
T234 56-60 NN denotes TNFα
T233 53-55 IN denotes in
T232 48-52 NN denotes role
T231 44-47 JJ denotes key
T230 42-43 DT denotes a
T229 36-41 VB denotes plays
T228 32-35 CC denotes and
T227 26-31 NN denotes cells
T226 21-25 NN denotes L929
T225 18-20 IN denotes in
T224 6-17 NN denotes necroptosis
T223 2-5 IN denotes for
R86 T224 T223 arg2Of necroptosis,for
R87 T227 T225 arg2Of cells,in
R88 T227 T226 arg1Of cells,L929
R91 T229 T228 arg2Of plays,and
R92 T229 T233 arg1Of plays,in
R93 T232 T229 arg2Of role,plays
R94 T232 T230 arg1Of role,a
R95 T232 T231 arg1Of role,key
R96 T235 T233 arg2Of production,in
R97 T235 T234 arg1Of production,TNFα
R98 T237 T236 arg2Of necroptosis,During
R99 T239 T240 arg1Of Akt,is
R100 T239 T241 arg2Of Akt,activated
R101 T241 T236 arg1Of activated,During
R102 T241 T238 arg1Of activated,","
R103 T241 T240 arg2Of activated,is
R104 T241 T242 arg1Of activated,in
R105 T241 T247 arg1Of activated,through
R106 T245 T244 arg1Of dependent,RIP1
R107 T246 T242 arg2Of fashion,in
R108 T246 T243 arg1Of fashion,a
R109 T246 T245 arg1Of fashion,dependent
R110 T249 T247 arg2Of phosphorylation,through
R111 T249 T248 arg1Of phosphorylation,its
R112 T249 T250 arg1Of phosphorylation,on
R113 T251 T250 arg2Of Thr308,on
R114 T254 T252 arg2Of cells,In
R115 T254 T253 arg1Of cells,L929
R116 T257 T256 arg1Of activation,this
R117 T257 T258 arg1Of activation,requires
R118 T258 T252 arg1Of requires,In
R119 T258 T255 arg1Of requires,","
R120 T261 T258 arg2Of inputs,requires
R121 T261 T259 arg1Of inputs,independent
R122 T261 T260 arg1Of inputs,signaling
R123 T261 T262 arg1Of inputs,from
R124 T265 T264 arg1Of factors,growth
R125 T265 T266 arg1Of factors,and
R126 T266 T262 arg2Of and,from
R127 T266 T263 arg1Of and,both

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T92 56-60 Protein denotes TNFα
T93 115-119 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T407 115-119 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T402 56-60 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T396 93-96 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T389 93-96 http://www.uniprot.org/uniprot/P31751 denotes Akt
T382 93-96 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T132 256-262 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T131 185-207 http://purl.obolibrary.org/obo/GO_0001775 denotes cells, this activation
T130 150-165 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T128 229-238 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T111 80-91 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T110 6-17 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T103 80-91 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T102 6-17 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

sentences

Id Subject Object Predicate Lexical cue
T64 73-176 Sentence denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308.
T7 73-176 Sentence denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308.

simple1

Id Subject Object Predicate Lexical cue
T147 56-60 Protein denotes TNFα
T148 115-119 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T357 56-60 Protein denotes TNFα
T358 115-119 Protein denotes RIP1
T366 48-52 Regulation denotes role
T367 61-71 Gene_expression denotes production
R452 T357 T367 themeOf TNFα,production
R456 T367 T366 themeOf production,role

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T445 56-60 Protein denotes TNFα
T446 115-119 Protein denotes RIP1
T454 61-71 Gene_expression denotes production
R471 T445 T454 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T425 208-216 Positive_regulation denotes requires
T424 48-52 Regulation denotes role
T414 56-60 Protein denotes TNFα
T415 115-119 Protein denotes RIP1
T423 61-71 Gene_expression denotes production
R459 T414 T423 themeOf TNFα,production
R463 T423 T424 themeOf production,role

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T764 56-71 Gene_expression denotes TNFα production
T758 73-175 Phosphorylation denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308
T757 73-175 Positive_regulation denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308
T745 115-129 Protein denotes RIP1 dependent
T737 166-175 Entity denotes on Thr308
T734 56-60 Protein denotes TNFα
T729 93-96 Protein denotes Akt
R433 T737 T758 siteOf on Thr308,"During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308"
R429 T729 T757 themeOf Akt,"During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308"
R430 T729 T758 themeOf Akt,"During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308"
R431 T734 T764 themeOf TNFα,TNFα production
R432 T737 T729 partOf on Thr308,Akt

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T604 271-274 CC denotes and
T603 263-270 NNS denotes factors
T602 256-262 NN denotes growth
T601 251-255 DT denotes both
T600 246-250 IN denotes from
T599 239-245 NNS denotes inputs
T598 229-238 VBG denotes signaling
T597 217-228 JJ denotes independent
T596 208-216 VBZ denotes requires
T595 197-207 NN denotes activation
T594 192-196 DT denotes this
T573 73-79 IN denotes During
T572 71-72 . denotes .
T571 61-71 NN denotes production
T570 56-60 JJ denotes TNFα
T569 53-55 IN denotes in
T568 48-52 NN denotes role
T567 44-47 JJ denotes key
T566 42-43 DT denotes a
T565 36-41 VBZ denotes plays
T564 32-35 CC denotes and
T563 26-31 NNS denotes cells
T562 21-25 CD denotes L929
T561 18-20 IN denotes in
T560 6-17 NN denotes necroptosis
T559 2-5 IN denotes for
T593 190-191 , denotes ,
T592 185-190 NNS denotes cells
T591 180-184 CD denotes L929
T590 177-179 IN denotes In
T589 175-176 . denotes .
T588 169-175 NNP denotes Thr308
T587 166-168 IN denotes on
T586 150-165 NN denotes phosphorylation
T585 146-149 PRP$ denotes its
T584 138-145 IN denotes through
T583 130-137 NN denotes fashion
T582 120-129 JJ denotes dependent
T581 115-119 NNP denotes RIP1
T580 113-114 DT denotes a
T579 110-112 IN denotes in
T578 100-109 VBN denotes activated
T577 97-99 VBZ denotes is
T576 93-96 NNP denotes Akt
T575 91-92 , denotes ,
T574 80-91 NN denotes necroptosis
R300 T560 T559 pobj necroptosis,for
R302 T562 T563 nummod L929,cells
R303 T563 T561 pobj cells,in
R306 T566 T568 det a,role
R307 T567 T568 amod key,role
R308 T568 T565 dobj role,plays
R309 T569 T568 prep in,role
R310 T570 T571 amod TNFα,production
R311 T571 T569 pobj production,in
R313 T573 T578 prep During,activated
R314 T574 T573 pobj necroptosis,During
R315 T575 T578 punct ",",activated
R316 T576 T578 nsubjpass Akt,activated
R317 T577 T578 auxpass is,activated
R318 T578 T578 ROOT activated,activated
R319 T579 T578 prep in,activated
R320 T580 T583 det a,fashion
R321 T581 T583 nmod RIP1,fashion
R322 T582 T583 amod dependent,fashion
R323 T583 T579 pobj fashion,in
R324 T584 T578 prep through,activated
R325 T585 T586 poss its,phosphorylation
R326 T586 T584 pobj phosphorylation,through
R327 T587 T586 prep on,phosphorylation
R328 T588 T587 pobj Thr308,on
R329 T589 T578 punct .,activated
R330 T590 T596 prep In,requires
R331 T591 T592 nummod L929,cells
R332 T592 T590 pobj cells,In
R333 T593 T596 punct ",",requires
R334 T594 T595 det this,activation
R335 T595 T596 nsubj activation,requires
R336 T596 T596 ROOT requires,requires
R337 T597 T599 amod independent,inputs
R338 T598 T599 amod signaling,inputs
R339 T599 T596 dobj inputs,requires
R340 T600 T599 prep from,inputs
R341 T601 T603 det both,factors
R342 T602 T603 compound growth,factors
R343 T603 T600 pobj factors,from
R344 T604 T603 cc and,factors

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T474 100-109 Positive_regulation denotes activated
T473 150-165 Phosphorylation denotes phosphorylation
T472 100-109 Positive_regulation denotes activated
T471 169-175 Protein denotes Thr308
T470 115-119 Protein denotes RIP1
T469 93-96 Protein denotes Akt
T468 61-71 Gene_expression denotes production
T467 56-60 Protein denotes TNFα
R218 T467 T468 themeOf TNFα,production
R219 T469 T472 themeOf Akt,activated
R220 T471 T473 themeOf Thr308,phosphorylation
R221 T473 T474 themeOf phosphorylation,activated

test3

Id Subject Object Predicate Lexical cue
T51 150-165 Phosphorylation denotes phosphorylation
T50 115-119 Protein denotes RIP1
T49 100-109 Positive_regulation denotes activated
T48 61-71 Gene_expression denotes production
T47 56-60 Protein denotes TNFα
T46 48-52 Regulation denotes role
T34 115-119 Protein denotes RIP1
T33 56-60 Protein denotes TNFα
R10 T47 T48 themeOf TNFα,production
R11 T48 T46 themeOf production,role
R12 T50 T49 themeOf RIP1,activated