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PMC:3585731 / 52211-52581 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T25976 330-333 Protein denotes 18S
T25975 282-285 Protein denotes 18S
T25974 232-236 Protein denotes TNFα
T25973 181-185 Protein denotes TNFα
T25972 91-94 Protein denotes 18S
T25971 6-10 Protein denotes TNFα

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T26061 343-369 NN denotes 5′-TAGTAGCGACGGGCGGTGTG-3′
T26060 335-342 JJ denotes reverse
T26059 333-334 -COLON- denotes :
T26058 330-333 NN denotes 18S
T26057 324-329 JJ denotes human
T26056 322-323 -COMMA- denotes ,
T26055 320-322 CD denotes -3
T26054 299-319 NN denotes CAGCCACCCGAGATTGAGCA
T26053 295-298 CD denotes 5′-
T26052 287-294 RB denotes forward
T26051 285-286 -COLON- denotes :
T26050 282-285 NN denotes 18S
T26049 276-281 JJ denotes human
T26048 274-275 -COLON- denotes ;
T26047 246-274 NN denotes 5′-GAGGGCTGATTAGAGAGAGGTC-3′
T26046 238-245 JJ denotes reverse
T26045 236-237 -COLON- denotes :
T26044 232-236 NN denotes TNFα
T26043 226-231 JJ denotes human
T26042 224-225 -COMMA- denotes ,
T26041 199-224 NN denotes ATGAGCACTGAAAGCATGATCC-3′
T26040 195-198 CD denotes 5′-
T26039 187-194 RB denotes forward
T26038 185-186 -COLON- denotes :
T26037 181-185 NN denotes TNFα
T26036 175-180 JJ denotes human
T26035 174-175 -COLON- denotes ;
T26034 144-174 NN denotes 5′-CTAAACCATCCAATCGGTAGTAGC-3′
T26033 136-143 JJ denotes reverse
T26032 134-135 -COMMA- denotes ,
T26031 108-134 NN denotes ATAACAGGTCTGTGATGCCCTTAG-3
T26030 104-107 JJ denotes 5-′
T26029 96-103 RB denotes forward
T26028 94-95 -COLON- denotes :
T26027 91-94 NN denotes 18S
T26026 85-90 NN denotes mouse
T26025 84-85 -COLON- denotes ;
T26024 59-84 NN denotes 5′-GCTACGACGTGGGCTACAG-3′
T26023 51-58 JJ denotes reverse
T26022 49-50 -COMMA- denotes ,
T26021 20-49 JJ denotes 5′-CCCTCACACTCAGATCATCTTCT-3′
T26020 12-19 RB denotes forward
T26019 10-11 -COLON- denotes :
T26018 6-10 NN denotes TNFα
T26017 0-5 NN denotes Mouse
R17781 T26018 T26017 arg1Of TNFα,Mouse
R17782 T26018 T26019 arg1Of TNFα,:
R17783 T26021 T26020 arg1Of 5′-CCCTCACACTCAGATCATCTTCT-3′,forward
R17784 T26021 T26022 arg1Of 5′-CCCTCACACTCAGATCATCTTCT-3′,","
R17785 T26023 T26022 arg2Of reverse,","
R17786 T26024 T26021 arg1Of 5′-GCTACGACGTGGGCTACAG-3′,5′-CCCTCACACTCAGATCATCTTCT-3′
R17787 T26024 T26023 arg1Of 5′-GCTACGACGTGGGCTACAG-3′,reverse
R17788 T26024 T26025 arg1Of 5′-GCTACGACGTGGGCTACAG-3′,;
R17789 T26025 T26019 arg2Of ;,:
R17790 T26025 T26028 arg1Of ;,:
R17791 T26027 T26025 arg2Of 18S,;
R17792 T26027 T26026 arg1Of 18S,mouse
R17793 T26030 T26029 arg1Of 5-′,forward
R17794 T26031 T26028 arg2Of ATAACAGGTCTGTGATGCCCTTAG-3,:
R17795 T26031 T26030 arg1Of ATAACAGGTCTGTGATGCCCTTAG-3,5-′
R17796 T26031 T26032 arg1Of ATAACAGGTCTGTGATGCCCTTAG-3,","
R17797 T26031 T26035 arg1Of ATAACAGGTCTGTGATGCCCTTAG-3,;
R17798 T26034 T26032 arg2Of 5′-CTAAACCATCCAATCGGTAGTAGC-3′,","
R17799 T26034 T26033 arg1Of 5′-CTAAACCATCCAATCGGTAGTAGC-3′,reverse
R17800 T26037 T26035 arg2Of TNFα,;
R17801 T26037 T26036 arg1Of TNFα,human
R17802 T26037 T26038 arg1Of TNFα,:
R17803 T26040 T26039 arg1Of 5′-,forward
R17804 T26041 T26038 arg2Of ATGAGCACTGAAAGCATGATCC-3′,:
R17805 T26041 T26040 arg1Of ATGAGCACTGAAAGCATGATCC-3′,5′-
R17806 T26041 T26042 arg1Of ATGAGCACTGAAAGCATGATCC-3′,","
R17807 T26041 T26045 arg1Of ATGAGCACTGAAAGCATGATCC-3′,:
R17808 T26044 T26042 arg2Of TNFα,","
R17809 T26044 T26043 arg1Of TNFα,human
R17810 T26047 T26045 arg2Of 5′-GAGGGCTGATTAGAGAGAGGTC-3′,:
R17811 T26047 T26046 arg1Of 5′-GAGGGCTGATTAGAGAGAGGTC-3′,reverse
R17812 T26047 T26048 arg1Of 5′-GAGGGCTGATTAGAGAGAGGTC-3′,;
R17813 T26050 T26048 arg2Of 18S,;
R17814 T26050 T26049 arg1Of 18S,human
R17815 T26050 T26051 arg1Of 18S,:
R17816 T26053 T26052 arg1Of 5′-,forward
R17817 T26054 T26053 arg1Of CAGCCACCCGAGATTGAGCA,5′-
R17818 T26054 T26055 arg1Of CAGCCACCCGAGATTGAGCA,-3
R17819 T26054 T26056 arg1Of CAGCCACCCGAGATTGAGCA,","
R17820 T26056 T26051 arg2Of ",",:
R17821 T26056 T26059 arg1Of ",",:
R17822 T26058 T26056 arg2Of 18S,","
R17823 T26058 T26057 arg1Of 18S,human
R17824 T26061 T26059 arg2Of 5′-TAGTAGCGACGGGCGGTGTG-3′,:
R17825 T26061 T26060 arg1Of 5′-TAGTAGCGACGGGCGGTGTG-3′,reverse

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T26002 330-333 Protein denotes 18S
T26001 282-285 Protein denotes 18S
T26000 232-236 Protein denotes TNFα
T25999 181-185 Protein denotes TNFα
T25998 91-94 Protein denotes 18S
T25997 6-10 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T26070 232-236 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T26069 181-185 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T26068 6-10 http://www.uniprot.org/uniprot/P01375 denotes TNFα

sentences

Id Subject Object Predicate Lexical cue
T25990 0-370 Sentence denotes Mouse TNFα: forward 5′-CCCTCACACTCAGATCATCTTCT-3′, reverse 5′-GCTACGACGTGGGCTACAG-3′;mouse 18S: forward 5-′ ATAACAGGTCTGTGATGCCCTTAG-3, reverse 5′-CTAAACCATCCAATCGGTAGTAGC-3′;human TNFα: forward 5′- ATGAGCACTGAAAGCATGATCC-3′, human TNFα: reverse 5′-GAGGGCTGATTAGAGAGAGGTC-3′; human 18S: forward 5′- CAGCCACCCGAGATTGAGCA -3, human 18S: reverse 5′-TAGTAGCGACGGGCGGTGTG-3′.
T323 0-370 Sentence denotes Mouse TNFα: forward 5′-CCCTCACACTCAGATCATCTTCT-3′, reverse 5′-GCTACGACGTGGGCTACAG-3′;mouse 18S: forward 5-′ ATAACAGGTCTGTGATGCCCTTAG-3, reverse 5′-CTAAACCATCCAATCGGTAGTAGC-3′;human TNFα: forward 5′- ATGAGCACTGAAAGCATGATCC-3′, human TNFα: reverse 5′-GAGGGCTGATTAGAGAGAGGTC-3′; human 18S: forward 5′- CAGCCACCCGAGATTGAGCA -3, human 18S: reverse 5′-TAGTAGCGACGGGCGGTGTG-3′.

simple1

Id Subject Object Predicate Lexical cue
T26014 330-333 Protein denotes 18S
T26013 282-285 Protein denotes 18S
T26012 232-236 Protein denotes TNFα
T26011 181-185 Protein denotes TNFα
T26010 91-94 Protein denotes 18S
T26009 6-10 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T26067 330-333 Protein denotes 18S
T26066 282-285 Protein denotes 18S
T26065 232-236 Protein denotes TNFα
T26064 181-185 Protein denotes TNFα
T26063 91-94 Protein denotes 18S
T26062 6-10 Protein denotes TNFα

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T26086 232-236 Protein denotes TNFα
T26085 181-185 Protein denotes TNFα
T26084 91-94 Protein denotes 18S
T26083 6-10 Protein denotes TNFα
T26088 330-333 Protein denotes 18S
T26087 282-285 Protein denotes 18S

DLUT931

Id Subject Object Predicate Lexical cue
T26076 330-333 Protein denotes 18S
T26075 282-285 Protein denotes 18S
T26074 232-236 Protein denotes TNFα
T26073 181-185 Protein denotes TNFα
T26072 91-94 Protein denotes 18S
T26071 6-10 Protein denotes TNFα

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T26175 226-236 Protein denotes human TNFα
T26174 59-94 Protein denotes 5′-GCTACGACGTGGGCTACAG-3′;mouse 18S
T26173 0-10 Protein denotes Mouse TNFα
T26172 295-333 Protein denotes 5′- CAGCCACCCGAGATTGAGCA -3, human 18S
T26171 276-285 Protein denotes human 18S
T26170 175-185 Protein denotes human TNFα

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T26166 369-370 . denotes .
T26165 368-369 NN denotes ′
T26164 346-368 NN denotes TAGTAGCGACGGGCGGTGTG-3
T26163 345-346 : denotes -
T26162 344-345 SYM denotes ′
T26161 343-344 CD denotes 5
T26160 335-342 VB denotes reverse
T26159 333-334 : denotes :
T26158 330-333 NNS denotes 18S
T26157 324-329 JJ denotes human
T26156 322-323 , denotes ,
T26155 320-322 CD denotes -3
T26154 299-319 NNP denotes CAGCCACCCGAGATTGAGCA
T26153 297-298 : denotes -
T26152 296-297 SYM denotes ′
T26151 295-296 CD denotes 5
T26150 287-294 RB denotes forward
T26149 285-286 : denotes :
T26148 282-285 NNS denotes 18S
T26147 276-281 JJ denotes human
T26146 274-275 : denotes ;
T26145 273-274 NN denotes ′
T26144 249-273 NN denotes GAGGGCTGATTAGAGAGAGGTC-3
T26143 248-249 : denotes -
T26142 247-248 SYM denotes ′
T26141 246-247 CD denotes 5
T26140 238-245 VB denotes reverse
T26139 236-237 : denotes :
T26138 232-236 NNP denotes TNFα
T26137 226-231 JJ denotes human
T26136 224-225 , denotes ,
T26135 223-224 NN denotes ′
T26134 199-223 NN denotes ATGAGCACTGAAAGCATGATCC-3
T26133 197-198 : denotes -
T26132 196-197 SYM denotes ′
T26131 195-196 CD denotes 5
T26130 187-194 RB denotes forward
T26129 185-186 : denotes :
T26128 181-185 NNP denotes TNFα
T26127 175-180 JJ denotes human
T26126 174-175 : denotes ;
T26125 173-174 NN denotes ′
T26124 147-173 NN denotes CTAAACCATCCAATCGGTAGTAGC-3
T26123 146-147 : denotes -
T26122 145-146 SYM denotes ′
T26121 144-145 CD denotes 5
T26120 136-143 VB denotes reverse
T26119 134-135 , denotes ,
T26118 108-134 NN denotes ATAACAGGTCTGTGATGCCCTTAG-3
T26117 106-107 NN denotes ′
T26116 105-106 : denotes -
T26115 104-105 LS denotes 5
T26114 96-103 RB denotes forward
T26113 94-95 : denotes :
T26112 91-94 NNS denotes 18S
T26111 85-90 NN denotes mouse
T26110 84-85 : denotes ;
T26109 83-84 NN denotes ′
T26108 62-83 NN denotes GCTACGACGTGGGCTACAG-3
T26107 61-62 : denotes -
T26106 60-61 SYM denotes ′
T26105 59-60 CD denotes 5
T26104 51-58 VB denotes reverse
T26103 49-50 , denotes ,
T26102 48-49 NN denotes ′
T26101 23-48 NN denotes CCCTCACACTCAGATCATCTTCT-3
T26100 22-23 : denotes -
T26099 21-22 SYM denotes ′
T26098 20-21 CD denotes 5
T26097 12-19 RB denotes forward
T26096 10-11 : denotes :
T26095 6-10 NNP denotes TNFα
T26094 0-5 NNP denotes Mouse
R17874 T26140 T26160 ccomp reverse,reverse
R17875 T26141 T26140 nummod 5,reverse
R17881 T26147 T26148 amod human,18S
R17828 T26094 T26095 compound Mouse,TNFα
R17829 T26095 T26095 ROOT TNFα,TNFα
R17830 T26096 T26102 punct :,′
R17831 T26097 T26102 advmod forward,′
R17832 T26098 T26102 nummod 5,′
R17833 T26099 T26101 punct ′,CCCTCACACTCAGATCATCTTCT-3
R17834 T26100 T26101 punct -,CCCTCACACTCAGATCATCTTCT-3
R17835 T26101 T26102 compound CCCTCACACTCAGATCATCTTCT-3,′
R17836 T26102 T26095 appos ′,TNFα
R17837 T26103 T26102 punct ",",′
R17838 T26104 T26120 ccomp reverse,reverse
R17839 T26105 T26109 nummod 5,′
R17840 T26106 T26108 punct ′,GCTACGACGTGGGCTACAG-3
R17841 T26107 T26108 punct -,GCTACGACGTGGGCTACAG-3
R17842 T26108 T26109 compound GCTACGACGTGGGCTACAG-3,′
R17843 T26109 T26104 dobj ′,reverse
R17844 T26110 T26120 punct ;,reverse
R17845 T26111 T26112 compound mouse,18S
R17846 T26112 T26120 nsubj 18S,reverse
R17847 T26113 T26112 punct :,18S
R17848 T26114 T26118 advmod forward,ATAACAGGTCTGTGATGCCCTTAG-3
R17849 T26115 T26117 meta 5,′
R17850 T26116 T26117 punct -,′
R17851 T26117 T26118 compound ′,ATAACAGGTCTGTGATGCCCTTAG-3
R17852 T26118 T26112 appos ATAACAGGTCTGTGATGCCCTTAG-3,18S
R17853 T26119 T26118 punct ",",ATAACAGGTCTGTGATGCCCTTAG-3
R17854 T26120 T26160 ccomp reverse,reverse
R17855 T26121 T26125 nummod 5,′
R17856 T26122 T26124 punct ′,CTAAACCATCCAATCGGTAGTAGC-3
R17857 T26123 T26124 punct -,CTAAACCATCCAATCGGTAGTAGC-3
R17858 T26124 T26125 compound CTAAACCATCCAATCGGTAGTAGC-3,′
R17859 T26125 T26120 dobj ′,reverse
R17860 T26126 T26160 punct ;,reverse
R17861 T26127 T26128 amod human,TNFα
R17862 T26128 T26160 nsubj TNFα,reverse
R17863 T26129 T26135 punct :,′
R17864 T26130 T26135 advmod forward,′
R17865 T26131 T26134 nummod 5,ATGAGCACTGAAAGCATGATCC-3
R17866 T26132 T26134 punct ′,ATGAGCACTGAAAGCATGATCC-3
R17867 T26133 T26134 punct -,ATGAGCACTGAAAGCATGATCC-3
R17868 T26134 T26135 compound ATGAGCACTGAAAGCATGATCC-3,′
R17869 T26135 T26128 appos ′,TNFα
R17872 T26138 T26128 conj TNFα,TNFα
R17882 T26148 T26160 nsubj 18S,reverse
R17883 T26149 T26148 punct :,18S
R17884 T26150 T26158 advmod forward,18S
R17885 T26151 T26158 nummod 5,18S
R17886 T26152 T26154 punct ′,CAGCCACCCGAGATTGAGCA
R17887 T26153 T26154 punct -,CAGCCACCCGAGATTGAGCA
R17888 T26154 T26158 nmod CAGCCACCCGAGATTGAGCA,18S
R17889 T26155 T26154 nummod -3,CAGCCACCCGAGATTGAGCA
R17890 T26156 T26158 punct ",",18S
R17873 T26139 T26140 punct :,reverse
R17876 T26142 T26144 punct ′,GAGGGCTGATTAGAGAGAGGTC-3
R17877 T26143 T26144 punct -,GAGGGCTGATTAGAGAGAGGTC-3
R17878 T26144 T26145 compound GAGGGCTGATTAGAGAGAGGTC-3,′
R17879 T26145 T26140 dep ′,reverse
R17880 T26146 T26160 punct ;,reverse
R17891 T26157 T26158 amod human,18S
R17892 T26158 T26148 appos 18S,18S
R17893 T26159 T26148 punct :,18S
R17894 T26160 T26160 ROOT reverse,reverse
R17895 T26161 T26165 nummod 5,′
R17896 T26162 T26164 punct ′,TAGTAGCGACGGGCGGTGTG-3
R17897 T26163 T26164 punct -,TAGTAGCGACGGGCGGTGTG-3
R17898 T26164 T26165 compound TAGTAGCGACGGGCGGTGTG-3,′
R17899 T26165 T26160 dobj ′,reverse
R17900 T26166 T26160 punct .,reverse
R17870 T26136 T26135 punct ",",′
R17871 T26137 T26138 compound human,TNFα

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T26091 226-236 Protein denotes human TNFα
T26090 181-185 Protein denotes TNFα
T26089 0-10 Protein denotes Mouse TNFα

test3

Id Subject Object Predicate Lexical cue
T25988 330-333 Protein denotes 18S
T25987 282-285 Protein denotes 18S
T25986 232-236 Protein denotes TNFα
T25985 181-185 Protein denotes TNFα
T25984 91-94 Protein denotes 18S
T25983 6-10 Protein denotes TNFα
T25982 330-333 Protein denotes 18S
T25981 282-285 Protein denotes 18S
T25980 232-236 Protein denotes TNFα
T25979 181-185 Protein denotes TNFα
T25978 91-94 Protein denotes 18S
T25977 6-10 Protein denotes TNFα