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PMC:3585731 / 5016-5224 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T825 65-75 Gene_expression denotes production
T824 52-56 Regulation denotes link
T813 60-64 Protein denotes TNFα
R499 T813 T825 themeOf TNFα,production
R504 T825 T824 themeOf production,link

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1744 196-205 VB denotes regulated
T1743 193-195 IN denotes in
T1742 185-192 NN denotes pathway
T1741 181-184 NN denotes Akt
T1740 177-180 DT denotes the
T1739 173-176 IN denotes for
T1738 168-172 NN denotes role
T1737 162-167 JJ denotes novel
T1736 158-161 CC denotes and
T1735 149-157 JJ denotes specific
T1734 147-148 DT denotes a
T1733 140-146 VB denotes reveal
T1732 132-139 NN denotes results
T1731 128-131 PRP-DOLLAR- denotes our
T1730 126-127 -COMMA- denotes ,
T1729 119-126 RB denotes Overall
T1728 115-117 FW denotes se
T1727 111-114 FW denotes per
T1726 105-110 NN denotes death
T1725 100-104 NN denotes cell
T1724 96-99 IN denotes for
T1723 84-95 JJ denotes dispensible
T1722 81-83 VB denotes is
T1721 77-80 CC denotes but
T1720 75-76 -COMMA- denotes ,
T1719 65-75 NN denotes production
T1718 60-64 NN denotes TNFα
T1717 57-59 TO denotes to
T1716 52-56 NN denotes link
T1715 48-51 JJ denotes key
T1714 46-47 DT denotes a
T1713 37-45 VB denotes provides
T1712 33-36 NN denotes Akt
T1711 21-32 NN denotes fibroblasts
T1710 16-20 NN denotes lung
T1709 10-15 NN denotes mouse
T1708 6-9 CC denotes and
T1707 4-5 -COMMA- denotes ,
R1155 T1708 T1707 arg1Of and,","
R1156 T1708 T1713 arg1Of and,provides
R1157 T1712 T1708 arg2Of Akt,and
R1158 T1712 T1709 arg1Of Akt,mouse
R1159 T1712 T1710 arg1Of Akt,lung
R1160 T1712 T1711 arg1Of Akt,fibroblasts
R1165 T1716 T1713 arg2Of link,provides
R1166 T1716 T1714 arg1Of link,a
R1167 T1716 T1715 arg1Of link,key
R1168 T1716 T1717 arg1Of link,to
R1169 T1719 T1717 arg2Of production,to
R1170 T1719 T1718 arg1Of production,TNFα
R1171 T1721 T1720 arg1Of but,","
R1172 T1722 T1721 arg2Of is,but
R1173 T1722 T1728 arg1Of is,se
R1174 T1723 T1722 arg2Of dispensible,is
R1175 T1723 T1724 arg1Of dispensible,for
R1176 T1726 T1724 arg2Of death,for
R1177 T1726 T1725 arg1Of death,cell
R1178 T1728 T1727 arg1Of se,per
R1179 T1732 T1731 arg1Of results,our
R1180 T1732 T1733 arg1Of results,reveal
R1181 T1733 T1729 arg1Of reveal,Overall
R1182 T1733 T1730 arg1Of reveal,","
R1183 T1735 T1736 arg1Of specific,and
R1184 T1737 T1736 arg2Of novel,and
R1185 T1738 T1733 arg2Of role,reveal
R1186 T1738 T1734 arg1Of role,a
R1187 T1738 T1735 arg1Of role,specific
R1188 T1738 T1737 arg1Of role,novel
R1189 T1738 T1739 arg1Of role,for
R1190 T1738 T1743 arg1Of role,in
R1191 T1742 T1739 arg2Of pathway,for
R1192 T1742 T1740 arg1Of pathway,the
R1193 T1742 T1741 arg1Of pathway,Akt

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T950 60-64 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1842 181-184 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T1841 33-36 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T1831 181-184 http://www.uniprot.org/uniprot/P31751 denotes Akt
T1830 33-36 http://www.uniprot.org/uniprot/P31751 denotes Akt
T1820 181-184 http://www.uniprot.org/uniprot/P31749 denotes Akt
T1819 33-36 http://www.uniprot.org/uniprot/P31749 denotes Akt
T1809 60-64 http://www.uniprot.org/uniprot/P01375 denotes TNFα

UBERON-AE

Id Subject Object Predicate Lexical cue
T879 16-20 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung

GO-BP

Id Subject Object Predicate Lexical cue
T1000 105-110 http://purl.obolibrary.org/obo/GO_0016265 denotes death

GO-CC

Id Subject Object Predicate Lexical cue
T1064 100-104 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

simple1

Id Subject Object Predicate Lexical cue
T1084 60-64 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1768 60-64 Protein denotes TNFα
T1777 65-75 Gene_expression denotes production
R1205 T1768 T1777 themeOf TNFα,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2152 65-75 Gene_expression denotes production
T2151 52-56 Positive_regulation denotes link
T2140 60-64 Protein denotes TNFα
R1462 T2140 T2152 themeOf TNFα,production
R1471 T2152 T2151 themeOf production,link

DLUT931

Id Subject Object Predicate Lexical cue
T1901 52-56 Positive_regulation denotes link
T1900 65-75 Gene_expression denotes production
T1887 60-64 Protein denotes TNFα
R1222 T1887 T1900 themeOf TNFα,production
R1229 T1900 T1901 themeOf production,link

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2797 60-75 Gene_expression denotes TNFα production
T2789 33-36 Protein denotes Akt
T2766 60-64 Protein denotes TNFα
T2761 177-192 Protein denotes the Akt pathway
T2751 10-32 Entity denotes mouse lung fibroblasts
R1971 T2766 T2797 themeOf TNFα,TNFα production

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2667 196-205 JJ denotes regulated
T2666 193-195 IN denotes in
T2665 185-192 NN denotes pathway
T2664 181-184 NNP denotes Akt
T2663 177-180 DT denotes the
T2662 173-176 IN denotes for
T2661 168-172 NN denotes role
T2660 162-167 JJ denotes novel
T2659 158-161 CC denotes and
T2658 149-157 JJ denotes specific
T2657 147-148 DT denotes a
T2656 140-146 VBP denotes reveal
T2655 132-139 NNS denotes results
T2654 128-131 PRP$ denotes our
T2653 126-127 , denotes ,
T2652 119-126 RB denotes Overall
T2651 117-118 . denotes .
T2650 115-117 FW denotes se
T2649 111-114 IN denotes per
T2648 105-110 NN denotes death
T2647 100-104 NN denotes cell
T2646 96-99 IN denotes for
T2645 84-95 JJ denotes dispensible
T2644 81-83 VBZ denotes is
T2643 77-80 CC denotes but
T2642 75-76 , denotes ,
T2641 65-75 NN denotes production
T2640 60-64 VB denotes TNFα
T2639 57-59 TO denotes to
T2638 52-56 NN denotes link
T2637 48-51 JJ denotes key
T2636 46-47 DT denotes a
T2635 37-45 VBZ denotes provides
T2634 33-36 NNP denotes Akt
T2633 21-32 NNS denotes fibroblasts
T2632 16-20 NN denotes lung
T2631 10-15 NN denotes mouse
T2630 6-9 CC denotes and
T2629 4-5 , denotes ,
R1916 T2631 T2632 compound mouse,lung
R1917 T2632 T2633 compound lung,fibroblasts
R1921 T2634 T2635 nsubj Akt,provides
R1927 T2636 T2638 det a,link
R1929 T2637 T2638 amod key,link
R1930 T2638 T2635 dobj link,provides
R1932 T2639 T2640 aux to,TNFα
R1933 T2640 T2638 relcl TNFα,link
R1934 T2641 T2640 dobj production,TNFα
R1943 T2645 T2644 acomp dispensible,is
R1944 T2646 T2645 prep for,dispensible
R1945 T2647 T2648 compound cell,death
R1946 T2648 T2646 pobj death,for
R1947 T2649 T2648 prep per,death
R1948 T2650 T2649 pobj se,per
R1950 T2652 T2656 advmod Overall,reveal
R1951 T2653 T2656 punct ",",reveal
R1952 T2654 T2655 poss our,results
R1954 T2655 T2656 nsubj results,reveal
R1956 T2656 T2656 ROOT reveal,reveal
R1957 T2657 T2661 det a,role
R1958 T2658 T2661 amod specific,role
R1960 T2659 T2658 cc and,specific
R1961 T2660 T2658 conj novel,specific
R1963 T2661 T2656 dobj role,reveal
R1965 T2662 T2661 prep for,role
R1966 T2663 T2665 det the,pathway
R1967 T2664 T2665 compound Akt,pathway
R1968 T2665 T2662 pobj pathway,for
R1970 T2666 T2665 prep in,pathway

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2205 181-184 Protein denotes Akt
T2204 65-75 Gene_expression denotes production
T2203 60-64 Protein denotes TNFα
R1488 T2203 T2204 themeOf TNFα,production

test3

Id Subject Object Predicate Lexical cue
T874 65-75 Gene_expression denotes production
T873 60-64 Protein denotes TNFα
T844 60-64 Protein denotes TNFα
R512 T873 T874 themeOf TNFα,production