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PMC:3585731 / 49916-50972 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T25119 204-213 Negative_regulation denotes inhibitor
T25118 966-971 Protein denotes IGF-1
T25117 926-929 Protein denotes EGF
T25116 909-913 Protein denotes bFGF
T25115 886-890 Protein denotes TNFα

2_test

Id Subject Object Predicate Lexical cue
23469174-18408713-90505484 62-64 18408713 denotes 23
23469174-16153840-90505485 68-70 16153840 denotes 24

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T25245 1050-1055 NNP denotes Sigma
T25244 1045-1049 IN denotes from
T25243 1040-1044 VB denotes were
T25242 1031-1039 NN denotes reagents
T25241 1025-1030 JJ denotes other
T25240 1021-1024 DT denotes All
T25239 1010-1020 NNP denotes Peprotech.
T25238 1007-1009 CC denotes or
T25237 998-1006 NNP denotes Sciences
T25236 993-997 NNP denotes Cell
T25235 988-992 IN denotes from
T25234 983-987 VB denotes were
T25233 981-982 -RRB- denotes )
T25232 976-981 NN denotes ng/ml
T25231 973-975 CD denotes 50
T25230 972-973 -LRB- denotes (
T25229 966-971 NN denotes IGF-1
T25228 962-965 CC denotes and
T25227 960-961 -COMMA- denotes ,
T25226 959-960 -RRB- denotes )
T25225 954-959 NN denotes ng/ml
T25224 951-953 CD denotes 20
T25223 950-951 -LRB- denotes (
T25222 942-949 NN denotes PDGF-BB
T25221 940-941 -COMMA- denotes ,
T25220 939-940 -RRB- denotes )
T25219 934-939 NN denotes ng/ml
T25218 931-933 CD denotes 50
T25217 930-931 -LRB- denotes (
T25216 926-929 NN denotes EGF
T25215 924-925 -COMMA- denotes ,
T25214 923-924 -RRB- denotes )
T25213 918-923 NN denotes ng/ml
T25212 915-917 CD denotes 25
T25211 914-915 -LRB- denotes (
T25210 909-913 NN denotes bFGF
T25209 903-908 JJ denotes human
T25208 901-902 -COMMA- denotes ,
T25207 900-901 -RRB- denotes )
T25206 895-900 NN denotes ng/ml
T25205 892-894 CD denotes 10
T25204 891-892 -LRB- denotes (
T25203 886-890 NN denotes TNFα
T25202 880-885 NN denotes mouse
T25201 876-879 CC denotes and
T25200 870-875 NNP denotes Human
T25199 862-869 NNP denotes Bachem.
T25198 857-861 IN denotes from
T25197 847-856 VB denotes purchased
T25196 843-846 VB denotes was
T25195 841-842 -RRB- denotes )
T25194 839-841 NN denotes µM
T25193 833-838 CD denotes 20–30
T25192 832-833 -LRB- denotes (
T25191 823-831 NN denotes zVAD.fmk
T25190 813-822 NN denotes inhibitor
T25189 801-812 NN denotes Pan-caspase
T25188 198-199 -COLON- denotes :
T25187 187-198 NN denotes experiments
T25186 183-186 DT denotes the
T25185 180-182 IN denotes in
T25184 175-179 VB denotes used
T25183 170-174 VB denotes were
T25182 168-169 -RRB- denotes )
T25181 156-168 NN denotes text/figures
T25180 152-155 DT denotes the
T25179 149-151 IN denotes in
T25178 139-148 VB denotes specified
T25177 129-138 RB denotes otherwise
T25176 122-128 IN denotes unless
T25175 121-122 -LRB- denotes (
T25174 106-120 NN denotes concentrations
T25173 100-105 JJ denotes final
T25172 96-99 CC denotes and
T25171 87-95 NN denotes reagents
T25170 77-86 VB denotes following
T25169 73-76 DT denotes The
T25168 70-71 -RRB- denotes ]
T25167 68-70 CD denotes 24
T25166 67-68 -LRB- denotes [
T25165 65-66 -COMMA- denotes ,
T25164 64-65 -RRB- denotes ]
T25163 62-64 CD denotes 23
T25162 61-62 -LRB- denotes [
T25161 51-60 VB denotes described
T25160 40-50 RB denotes previously
T25159 37-39 IN denotes as
T25158 25-36 VB denotes synthesized
T25157 20-24 VB denotes were
T25156 12-19 NN denotes analogs
T25155 0-11 NN denotes Necrostatin
R17101 T25156 T25155 arg1Of analogs,Necrostatin
R17102 T25156 T25157 arg1Of analogs,were
R17103 T25156 T25158 arg2Of analogs,synthesized
R17104 T25158 T25157 arg2Of synthesized,were
R17105 T25158 T25159 arg1Of synthesized,as
R17106 T25158 T25165 arg1Of synthesized,","
R17107 T25158 T25166 arg1Of synthesized,[
R17108 T25161 T25160 arg1Of described,previously
R17109 T25163 T25159 arg2Of 23,as
R17110 T25163 T25161 arg1Of 23,described
R17111 T25163 T25162 arg2Of 23,[
R17112 T25164 T25162 arg3Of ],[
R17113 T25167 T25166 arg2Of 24,[
R17114 T25168 T25166 arg3Of ],[
R17115 T25171 T25170 arg1Of reagents,following
R17116 T25171 T25172 arg1Of reagents,and
R17117 T25172 T25169 arg1Of and,The
R17118 T25172 T25175 arg1Of and,(
R17119 T25174 T25172 arg2Of concentrations,and
R17120 T25174 T25173 arg1Of concentrations,final
R17121 T25178 T25176 arg2Of specified,unless
R17122 T25178 T25177 arg1Of specified,otherwise
R17123 T25178 T25179 arg1Of specified,in
R17124 T25181 T25180 arg1Of text/figures,the
R17125 T25181 T25182 arg1Of text/figures,)
R17126 T25181 T25183 arg1Of text/figures,were
R17127 T25181 T25184 arg2Of text/figures,used
R17128 T25184 T25175 arg2Of used,(
R17129 T25184 T25176 arg1Of used,unless
R17130 T25184 T25183 arg2Of used,were
R17131 T25184 T25185 arg1Of used,in
R17132 T25187 T25185 arg2Of experiments,in
R17133 T25187 T25186 arg1Of experiments,the
R17134 T25188 T25175 arg3Of :,(
R17135 T25191 T25189 arg1Of zVAD.fmk,Pan-caspase
R17136 T25191 T25190 arg1Of zVAD.fmk,inhibitor
R17137 T25191 T25192 arg1Of zVAD.fmk,(
R17138 T25191 T25196 arg1Of zVAD.fmk,was
R17139 T25191 T25197 arg2Of zVAD.fmk,purchased
R17140 T25194 T25192 arg2Of µM,(
R17141 T25194 T25193 arg1Of µM,20–30
R17142 T25195 T25192 arg3Of ),(
R17143 T25197 T25196 arg2Of purchased,was
R17144 T25197 T25198 arg1Of purchased,from
R17145 T25200 T25198 arg2Of Human,from
R17146 T25200 T25199 arg1Of Human,Bachem.
R17147 T25203 T25201 arg1Of TNFα,and
R17148 T25203 T25202 arg1Of TNFα,mouse
R17149 T25203 T25204 arg1Of TNFα,(
R17150 T25203 T25208 arg1Of TNFα,","
R17151 T25203 T25238 arg1Of TNFα,or
R17152 T25206 T25204 arg2Of ng/ml,(
R17153 T25206 T25205 arg1Of ng/ml,10
R17154 T25207 T25204 arg3Of ),(
R17155 T25210 T25209 arg1Of bFGF,human
R17156 T25210 T25211 arg1Of bFGF,(
R17157 T25210 T25215 arg1Of bFGF,","
R17158 T25213 T25211 arg2Of ng/ml,(
R17159 T25213 T25212 arg1Of ng/ml,25
R17160 T25214 T25211 arg3Of ),(
R17161 T25215 T25221 arg1Of ",",","
R17162 T25216 T25215 arg2Of EGF,","
R17163 T25216 T25217 arg1Of EGF,(
R17164 T25219 T25217 arg2Of ng/ml,(
R17165 T25219 T25218 arg1Of ng/ml,50
R17166 T25220 T25217 arg3Of ),(
R17167 T25221 T25228 arg1Of ",",and
R17168 T25222 T25221 arg2Of PDGF-BB,","
R17169 T25222 T25223 arg1Of PDGF-BB,(
R17170 T25225 T25223 arg2Of ng/ml,(
R17171 T25225 T25224 arg1Of ng/ml,20
R17172 T25226 T25223 arg3Of ),(
R17173 T25228 T25227 arg1Of and,","
R17174 T25228 T25234 arg1Of and,were
R17175 T25228 T25235 arg1Of and,from
R17176 T25229 T25228 arg2Of IGF-1,and
R17177 T25229 T25230 arg1Of IGF-1,(
R17178 T25232 T25230 arg2Of ng/ml,(
R17179 T25232 T25231 arg1Of ng/ml,50
R17180 T25233 T25230 arg3Of ),(
R17181 T25234 T25208 arg2Of were,","
R17182 T25235 T25234 arg2Of from,were
R17183 T25237 T25235 arg2Of Sciences,from
R17184 T25237 T25236 arg1Of Sciences,Cell
R17185 T25238 T25243 arg1Of or,were
R17186 T25238 T25244 arg1Of or,from
R17187 T25242 T25238 arg2Of reagents,or
R17188 T25242 T25239 arg1Of reagents,Peprotech.
R17189 T25242 T25240 arg1Of reagents,All
R17190 T25242 T25241 arg1Of reagents,other
R17191 T25243 T25196 modOf were,was
R17192 T25244 T25243 arg2Of from,were
R17193 T25245 T25244 arg2Of Sigma,from

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T25141 966-971 Protein denotes IGF-1
T25140 926-929 Protein denotes EGF
T25139 909-913 Protein denotes bFGF
T25138 886-890 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T25258 909-913 http://www.uniprot.org/uniprot/Q788Q8 denotes bFGF
T25257 886-890 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T25256 200-203 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T25255 200-203 http://www.uniprot.org/uniprot/P31751 denotes Akt
T25254 200-203 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T25142 350-353 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-MF

Id Subject Object Predicate Lexical cue
T25145 942-946 http://purl.obolibrary.org/obo/GO_0005161 denotes PDGF
T25144 926-929 http://purl.obolibrary.org/obo/GO_0005154 denotes EGF
T25143 350-353 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T25147 993-997 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T25146 696-700 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell

sentences

Id Subject Object Predicate Lexical cue
T25133 801-1056 Sentence denotes Pan-caspase inhibitor zVAD.fmk (20–30 µM) was purchased from Bachem. Human and mouse TNFα (10 ng/ml), human bFGF (25 ng/ml), EGF (50 ng/ml), PDGF-BB (20 ng/ml), and IGF-1 (50 ng/ml) were from Cell Sciences or Peprotech. All other reagents were from Sigma.
T25132 200-800 Sentence denotes Akt inhibitor VIII (10 µM, Calbiochem), MK-2206 (10 µM, Selleck Chem), Triciribine (100 µM, National Cancer Institute), SP600125 (10 µM, Calbiochem), JNK inhibitor VIII (10 µM, Calbiochem), UO126 (10 mM, Cayman Chem), PD169316 (10 µM, Calbiochem), LiCl (10 mM, Sigma), SB216763 (10 µM, Calbiochem), BX912 (10 µM, Axon Med Chem), PF-4706871 (Sigma), rapamycin (100 nM, Santa Cruz), PI-103 (10 µM, Calbiochem), Torin-1 (500 nM, gift of Dr. Nathanael Grey (Harvard Medical School), LY249002 (10 µM, Cell Signaling), PD173074 (2 µM, Cayman Chem), PD166866 (20 µM, Calbiochem), 4EGI-1 (50 µM, Calbiochem).
T25131 73-199 Sentence denotes The following reagents and final concentrations (unless otherwise specified in the text/figures) were used in the experiments:
T25130 0-72 Sentence denotes Necrostatin analogs were synthesized as previously described [23], [24].
T310 0-72 Sentence denotes Necrostatin analogs were synthesized as previously described [23], [24].
T311 73-199 Sentence denotes The following reagents and final concentrations (unless otherwise specified in the text/figures) were used in the experiments:
T312 200-800 Sentence denotes Akt inhibitor VIII (10 µM, Calbiochem), MK-2206 (10 µM, Selleck Chem), Triciribine (100 µM, National Cancer Institute), SP600125 (10 µM, Calbiochem), JNK inhibitor VIII (10 µM, Calbiochem), UO126 (10 mM, Cayman Chem), PD169316 (10 µM, Calbiochem), LiCl (10 mM, Sigma), SB216763 (10 µM, Calbiochem), BX912 (10 µM, Axon Med Chem), PF-4706871 (Sigma), rapamycin (100 nM, Santa Cruz), PI-103 (10 µM, Calbiochem), Torin-1 (500 nM, gift of Dr. Nathanael Grey (Harvard Medical School), LY249002 (10 µM, Cell Signaling), PD173074 (2 µM, Cayman Chem), PD166866 (20 µM, Calbiochem), 4EGI-1 (50 µM, Calbiochem).
T313 801-869 Sentence denotes Pan-caspase inhibitor zVAD.fmk (20–30 µM) was purchased from Bachem.
T314 870-1020 Sentence denotes Human and mouse TNFα (10 ng/ml), human bFGF (25 ng/ml), EGF (50 ng/ml), PDGF-BB (20 ng/ml), and IGF-1 (50 ng/ml) were from Cell Sciences or Peprotech.
T315 1021-1056 Sentence denotes All other reagents were from Sigma.

simple1

Id Subject Object Predicate Lexical cue
T25151 966-971 Protein denotes IGF-1
T25150 926-929 Protein denotes EGF
T25149 909-913 Protein denotes bFGF
T25148 886-890 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T25253 966-971 Protein denotes IGF-1
T25252 926-929 Protein denotes EGF
T25251 909-913 Protein denotes bFGF
T25250 886-890 Protein denotes TNFα

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T25531 966-971 Protein denotes IGF-1
T25530 926-929 Protein denotes EGF
T25529 909-913 Protein denotes bFGF
T25528 886-890 Protein denotes TNFα

DLUT931

Id Subject Object Predicate Lexical cue
T25262 966-971 Protein denotes IGF-1
T25261 926-929 Protein denotes EGF
T25260 909-913 Protein denotes bFGF
T25259 886-890 Protein denotes TNFα

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T25569 801-868 Binding denotes Pan-caspase inhibitor zVAD.fmk (20–30 µM) was purchased from Bachem
T25568 813-822 Entity denotes inhibitor
T25567 880-890 Protein denotes mouse TNFα
T25566 926-929 Protein denotes EGF
T25565 73-95 Entity denotes The following reagents
T25564 903-913 Protein denotes human bFGF
T25563 801-842 Protein denotes Pan-caspase inhibitor zVAD.fmk (20–30 µM)
T25562 801-842 Entity denotes Pan-caspase inhibitor zVAD.fmk (20–30 µM)
T25561 942-949 Entity denotes PDGF-BB
T25559 1021-1039 Entity denotes All other reagents
T25558 993-997 Entity denotes Cell
T25557 966-971 Protein denotes IGF-1
T25556 1050-1055 Protein denotes Sigma
R17464 T25562 T25569 themeOf Pan-caspase inhibitor zVAD.fmk (20–30 µM),Pan-caspase inhibitor zVAD.fmk (20–30 µM) was purchased from Bachem

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T25485 903-908 JJ denotes human
T25484 901-902 , denotes ,
T25483 900-901 -RRB- denotes )
T25482 895-900 NN denotes ng/ml
T25481 892-894 CD denotes 10
T25480 891-892 -LRB- denotes (
T25479 886-890 NNP denotes TNFα
T25478 880-885 NN denotes mouse
T25477 876-879 CC denotes and
T25476 870-875 NNP denotes Human
T25475 868-869 . denotes .
T25474 862-868 NNP denotes Bachem
T25473 857-861 IN denotes from
T25472 847-856 VBN denotes purchased
T25471 843-846 VBD denotes was
T25470 841-842 -RRB- denotes )
T25469 839-841 NNP denotes µM
T25468 836-838 CD denotes 30
T25467 833-835 CD denotes 20
T25466 832-833 -LRB- denotes (
T25465 823-831 NNP denotes zVAD.fmk
T25464 813-822 NN denotes inhibitor
T25463 801-812 NN denotes Pan-caspase
T25462 799-800 . denotes .
T25461 798-799 -RRB- denotes )
T25460 788-798 NNP denotes Calbiochem
T25459 786-787 , denotes ,
T25458 784-786 NNP denotes µM
T25457 781-783 CD denotes 50
T25456 780-781 -LRB- denotes (
T25455 773-779 NNP denotes 4EGI-1
T25454 771-772 , denotes ,
T25453 770-771 -RRB- denotes )
T25452 760-770 NNP denotes Calbiochem
T25451 758-759 , denotes ,
T25450 756-758 NNP denotes µM
T25449 753-755 CD denotes 20
T25448 752-753 -LRB- denotes (
T25447 743-751 NNP denotes PD166866
T25446 741-742 , denotes ,
T25445 740-741 -RRB- denotes )
T25444 736-740 NNP denotes Chem
T25443 729-735 NNP denotes Cayman
T25442 727-728 , denotes ,
T25441 725-727 NNP denotes µM
T25440 723-724 CD denotes 2
T25439 722-723 -LRB- denotes (
T25438 713-721 NNP denotes PD173074
T25437 711-712 , denotes ,
T25436 710-711 -RRB- denotes )
T25435 701-710 NNP denotes Signaling
T25434 696-700 NNP denotes Cell
T25433 694-695 , denotes ,
T25432 692-694 NNP denotes µM
T25431 689-691 CD denotes 10
T25430 688-689 -LRB- denotes (
T25429 679-687 NNP denotes LY249002
T25428 677-678 , denotes ,
T25427 676-677 -RRB- denotes )
T25426 670-676 NNP denotes School
T25425 662-669 NNP denotes Medical
T25424 654-661 NNP denotes Harvard
T25423 653-654 -LRB- denotes (
T25422 648-652 NNP denotes Grey
T25421 638-647 NNP denotes Nathanael
T25420 634-637 NNP denotes Dr.
T25419 631-633 IN denotes of
T25418 626-630 NN denotes gift
T25417 624-625 , denotes ,
T25416 622-624 NNP denotes nM
T25415 618-621 CD denotes 500
T25414 617-618 -LRB- denotes (
T25413 609-616 NNP denotes Torin-1
T25412 607-608 , denotes ,
T25411 606-607 -RRB- denotes )
T25410 596-606 NNP denotes Calbiochem
T25409 594-595 , denotes ,
T25408 592-594 NNP denotes µM
T25407 589-591 CD denotes 10
T25406 588-589 -LRB- denotes (
T25405 581-587 NN denotes PI-103
T25404 579-580 , denotes ,
T25403 578-579 -RRB- denotes )
T25402 574-578 NNP denotes Cruz
T25401 568-573 NNP denotes Santa
T25400 566-567 , denotes ,
T25399 564-566 NNP denotes nM
T25398 560-563 CD denotes 100
T25397 559-560 -LRB- denotes (
T25396 549-558 NN denotes rapamycin
T25395 547-548 , denotes ,
T25394 546-547 -RRB- denotes )
T25393 541-546 NNP denotes Sigma
T25392 540-541 -LRB- denotes (
T25391 529-539 NNP denotes PF-4706871
T25390 527-528 , denotes ,
T25389 526-527 -RRB- denotes )
T25388 522-526 NNP denotes Chem
T25387 518-521 NNP denotes Med
T25386 513-517 NNP denotes Axon
T25385 511-512 , denotes ,
T25384 509-511 NNP denotes µM
T25383 506-508 CD denotes 10
T25382 505-506 -LRB- denotes (
T25381 499-504 NNP denotes BX912
T25380 497-498 , denotes ,
T25379 496-497 -RRB- denotes )
T25378 486-496 NNP denotes Calbiochem
T25377 484-485 , denotes ,
T25376 482-484 NNP denotes µM
T25375 479-481 CD denotes 10
T25374 478-479 -LRB- denotes (
T25373 469-477 NNP denotes SB216763
T25372 467-468 , denotes ,
T25371 466-467 -RRB- denotes )
T25370 461-466 NNP denotes Sigma
T25369 459-460 , denotes ,
T25368 457-459 NNP denotes mM
T25367 454-456 CD denotes 10
T25366 453-454 -LRB- denotes (
T25365 448-452 NNP denotes LiCl
T25364 446-447 , denotes ,
T25363 445-446 -RRB- denotes )
T25362 435-445 NNP denotes Calbiochem
T25361 433-434 , denotes ,
T25360 431-433 NNP denotes µM
T25359 428-430 CD denotes 10
T25337 348-349 , denotes ,
T25336 347-348 -RRB- denotes )
T25335 337-347 NNP denotes Calbiochem
T25334 335-336 , denotes ,
T25333 333-335 NNP denotes µM
T25332 330-332 CD denotes 10
T25331 329-330 -LRB- denotes (
T25330 320-328 NNP denotes SP600125
T25329 318-319 , denotes ,
T25328 317-318 -RRB- denotes )
T25327 308-317 NNP denotes Institute
T25326 301-307 NNP denotes Cancer
T25325 292-300 NNP denotes National
T25324 290-291 , denotes ,
T25323 288-290 NNP denotes µM
T25322 284-287 CD denotes 100
T25321 283-284 -LRB- denotes (
T25320 271-282 NNP denotes Triciribine
T25319 269-270 , denotes ,
T25318 268-269 -RRB- denotes )
T25317 264-268 NNP denotes Chem
T25316 256-263 NNP denotes Selleck
T25315 254-255 , denotes ,
T25314 252-254 NNP denotes µM
T25313 249-251 CD denotes 10
T25312 248-249 -LRB- denotes (
T25311 240-247 NNP denotes MK-2206
T25310 238-239 , denotes ,
T25309 237-238 -RRB- denotes )
T25308 227-237 NNP denotes Calbiochem
T25280 71-72 . denotes .
T25279 70-71 NNP denotes ]
T25278 68-70 CD denotes 24
T25277 67-68 NNP denotes [
T25276 65-66 , denotes ,
T25275 64-65 NNP denotes ]
T25274 62-64 CD denotes 23
T25273 61-62 NNP denotes [
T25272 51-60 VBN denotes described
T25271 40-50 RB denotes previously
T25270 37-39 IN denotes as
T25269 25-36 VBN denotes synthesized
T25268 20-24 VBD denotes were
T25267 12-19 NNS denotes analogs
T25266 0-11 NNP denotes Necrostatin
T25344 375-376 , denotes ,
T25343 373-375 NNP denotes µM
T25342 370-372 CD denotes 10
T25341 369-370 -LRB- denotes (
T25340 364-368 NNP denotes VIII
T25339 354-363 NN denotes inhibitor
T25338 350-353 NNP denotes JNK
T25307 225-226 , denotes ,
T25306 223-225 NNP denotes µM
T25305 220-222 CD denotes 10
T25304 219-220 -LRB- denotes (
T25303 214-218 NNP denotes VIII
T25302 204-213 NN denotes inhibitor
T25301 200-203 JJ denotes Akt
T25300 198-199 : denotes :
T25299 187-198 NNS denotes experiments
T25298 183-186 DT denotes the
T25297 180-182 IN denotes in
T25296 175-179 VBN denotes used
T25295 170-174 VBD denotes were
T25294 168-169 -RRB- denotes )
T25293 156-168 NNS denotes text/figures
T25292 152-155 DT denotes the
T25291 149-151 IN denotes in
T25290 139-148 VBN denotes specified
T25289 129-138 RB denotes otherwise
T25288 122-128 IN denotes unless
T25287 121-122 -LRB- denotes (
T25286 106-120 NNS denotes concentrations
T25285 100-105 JJ denotes final
T25284 96-99 CC denotes and
T25283 87-95 NNS denotes reagents
T25282 77-86 VBG denotes following
T25281 73-76 DT denotes The
T25358 427-428 -LRB- denotes (
T25357 418-426 NNP denotes PD169316
T25356 416-417 , denotes ,
T25355 415-416 -RRB- denotes )
T25354 411-415 NNP denotes Chem
T25353 404-410 NNP denotes Cayman
T25352 402-403 , denotes ,
T25351 400-402 NNP denotes mM
T25350 397-399 CD denotes 10
T25349 396-397 -LRB- denotes (
T25348 390-395 NNP denotes UO126
T25347 388-389 , denotes ,
T25346 387-388 -RRB- denotes )
T25345 377-387 NNP denotes Calbiochem
T25523 1055-1056 . denotes .
T25522 1050-1055 NNP denotes Sigma
T25521 1045-1049 IN denotes from
T25520 1040-1044 VBD denotes were
T25519 1031-1039 NNS denotes reagents
T25518 1025-1030 JJ denotes other
T25517 1021-1024 DT denotes All
T25516 1019-1020 . denotes .
T25515 1010-1019 NNP denotes Peprotech
T25514 1007-1009 CC denotes or
T25513 998-1006 NNPS denotes Sciences
T25512 993-997 NNP denotes Cell
T25511 988-992 IN denotes from
T25510 983-987 VBD denotes were
T25509 981-982 -RRB- denotes )
T25508 976-981 NN denotes ng/ml
T25507 973-975 CD denotes 50
T25506 972-973 -LRB- denotes (
T25505 966-971 NNP denotes IGF-1
T25504 962-965 CC denotes and
T25503 960-961 , denotes ,
T25502 959-960 -RRB- denotes )
T25501 954-959 NN denotes ng/ml
T25500 951-953 CD denotes 20
T25499 950-951 -LRB- denotes (
T25498 942-949 NNP denotes PDGF-BB
T25497 940-941 , denotes ,
T25496 939-940 -RRB- denotes )
T25495 934-939 NN denotes ng/ml
T25494 931-933 CD denotes 50
T25493 930-931 -LRB- denotes (
T25492 926-929 NNP denotes EGF
T25491 924-925 , denotes ,
T25490 923-924 -RRB- denotes )
T25489 918-923 NN denotes ng/ml
T25488 915-917 CD denotes 25
T25487 914-915 -LRB- denotes (
T25486 909-913 NNP denotes bFGF
R17200 T25266 T25267 compound Necrostatin,analogs
R17202 T25268 T25269 auxpass were,synthesized
R17203 T25269 T25269 ROOT synthesized,synthesized
R17204 T25270 T25272 mark as,described
R17205 T25271 T25272 advmod previously,described
R17206 T25272 T25269 advcl described,synthesized
R17207 T25273 T25275 compound [,]
R17208 T25274 T25275 compound 23,]
R17209 T25275 T25272 dobj ],described
R17210 T25276 T25275 punct ",",]
R17211 T25277 T25279 nmod [,]
R17212 T25278 T25279 nummod 24,]
R17213 T25279 T25275 appos ],]
R17214 T25280 T25269 punct .,synthesized
R17215 T25281 T25283 det The,reagents
R17216 T25282 T25283 amod following,reagents
R17217 T25283 T25296 nsubjpass reagents,used
R17218 T25284 T25283 cc and,reagents
R17219 T25285 T25286 amod final,concentrations
R17220 T25286 T25283 conj concentrations,reagents
R17221 T25287 T25290 punct (,specified
R17222 T25288 T25290 mark unless,specified
R17223 T25289 T25290 advmod otherwise,specified
R17224 T25290 T25283 acl specified,reagents
R17225 T25291 T25290 prep in,specified
R17226 T25292 T25293 det the,text/figures
R17227 T25293 T25291 pobj text/figures,in
R17228 T25294 T25283 punct ),reagents
R17229 T25295 T25296 auxpass were,used
R17230 T25296 T25296 ROOT used,used
R17231 T25297 T25296 prep in,used
R17232 T25298 T25299 det the,experiments
R17233 T25299 T25297 pobj experiments,in
R17234 T25300 T25303 punct :,VIII
R17235 T25301 T25303 amod Akt,VIII
R17236 T25302 T25303 compound inhibitor,VIII
R17237 T25303 T25296 npadvmod VIII,used
R17238 T25304 T25303 punct (,VIII
R17239 T25305 T25306 nummod 10,µM
R17240 T25306 T25303 appos µM,VIII
R17241 T25307 T25306 punct ",",µM
R17242 T25308 T25306 appos Calbiochem,µM
R17243 T25309 T25306 punct ),µM
R17244 T25310 T25303 punct ",",VIII
R17245 T25311 T25314 nmod MK-2206,µM
R17246 T25312 T25314 punct (,µM
R17247 T25313 T25314 nummod 10,µM
R17248 T25314 T25303 appos µM,VIII
R17249 T25315 T25314 punct ",",µM
R17250 T25316 T25317 compound Selleck,Chem
R17251 T25317 T25314 appos Chem,µM
R17252 T25318 T25314 punct ),µM
R17253 T25319 T25314 punct ",",µM
R17254 T25320 T25314 conj Triciribine,µM
R17255 T25321 T25323 punct (,µM
R17256 T25322 T25323 nummod 100,µM
R17257 T25323 T25314 conj µM,µM
R17258 T25324 T25323 punct ",",µM
R17259 T25325 T25327 compound National,Institute
R17260 T25326 T25327 compound Cancer,Institute
R17261 T25327 T25323 appos Institute,µM
R17262 T25328 T25323 punct ),µM
R17263 T25329 T25323 punct ",",µM
R17264 T25330 T25323 conj SP600125,µM
R17265 T25331 T25333 punct (,µM
R17266 T25332 T25333 nummod 10,µM
R17267 T25333 T25323 conj µM,µM
R17268 T25334 T25333 punct ",",µM
R17269 T25335 T25333 conj Calbiochem,µM
R17270 T25336 T25335 punct ),Calbiochem
R17271 T25337 T25333 punct ",",µM
R17272 T25338 T25340 compound JNK,VIII
R17273 T25339 T25340 compound inhibitor,VIII
R17274 T25340 T25333 npadvmod VIII,µM
R17275 T25341 T25340 punct (,VIII
R17276 T25342 T25343 nummod 10,µM
R17277 T25343 T25340 appos µM,VIII
R17278 T25344 T25340 punct ",",VIII
R17279 T25345 T25340 appos Calbiochem,VIII
R17280 T25346 T25340 punct ),VIII
R17281 T25347 T25340 punct ",",VIII
R17282 T25348 T25340 appos UO126,VIII
R17283 T25349 T25351 punct (,mM
R17284 T25350 T25351 nummod 10,mM
R17285 T25351 T25340 appos mM,VIII
R17286 T25352 T25351 punct ",",mM
R17287 T25353 T25354 compound Cayman,Chem
R17288 T25354 T25351 npadvmod Chem,mM
R17289 T25355 T25351 punct ),mM
R17290 T25356 T25340 punct ",",VIII
R17291 T25357 T25340 appos PD169316,VIII
R17292 T25358 T25360 punct (,µM
R17293 T25359 T25360 nummod 10,µM
R17294 T25360 T25340 appos µM,VIII
R17295 T25361 T25360 punct ",",µM
R17296 T25362 T25360 appos Calbiochem,µM
R17297 T25363 T25360 punct ),µM
R17298 T25364 T25360 punct ",",µM
R17299 T25365 T25360 conj LiCl,µM
R17300 T25366 T25368 punct (,mM
R17301 T25367 T25368 nummod 10,mM
R17302 T25368 T25340 appos mM,VIII
R17303 T25369 T25368 punct ",",mM
R17304 T25370 T25368 npadvmod Sigma,mM
R17305 T25371 T25368 punct ),mM
R17306 T25372 T25340 punct ",",VIII
R17307 T25373 T25340 appos SB216763,VIII
R17308 T25374 T25376 punct (,µM
R17309 T25375 T25376 nummod 10,µM
R17310 T25376 T25340 appos µM,VIII
R17311 T25377 T25376 punct ",",µM
R17312 T25378 T25376 appos Calbiochem,µM
R17313 T25379 T25376 punct ),µM
R17314 T25380 T25376 punct ",",µM
R17315 T25381 T25376 conj BX912,µM
R17316 T25382 T25384 punct (,µM
R17317 T25383 T25384 nummod 10,µM
R17318 T25384 T25388 npadvmod µM,Chem
R17319 T25385 T25384 punct ",",µM
R17320 T25386 T25388 compound Axon,Chem
R17321 T25387 T25388 compound Med,Chem
R17322 T25388 T25340 appos Chem,VIII
R17323 T25389 T25340 punct ),VIII
R17324 T25390 T25340 punct ",",VIII
R17325 T25391 T25340 appos PF-4706871,VIII
R17326 T25392 T25393 punct (,Sigma
R17327 T25393 T25391 parataxis Sigma,PF-4706871
R17328 T25394 T25393 punct ),Sigma
R17329 T25395 T25340 punct ",",VIII
R17330 T25396 T25399 nmod rapamycin,nM
R17331 T25397 T25399 punct (,nM
R17332 T25398 T25399 nummod 100,nM
R17333 T25399 T25340 appos nM,VIII
R17334 T25400 T25399 punct ",",nM
R17335 T25401 T25402 compound Santa,Cruz
R17336 T25402 T25399 appos Cruz,nM
R17337 T25403 T25399 punct ),nM
R17338 T25404 T25399 punct ",",nM
R17339 T25405 T25408 nmod PI-103,µM
R17340 T25406 T25408 punct (,µM
R17341 T25407 T25408 nummod 10,µM
R17342 T25408 T25399 conj µM,nM
R17343 T25409 T25408 punct ",",µM
R17344 T25410 T25408 conj Calbiochem,µM
R17345 T25411 T25410 punct ),Calbiochem
R17346 T25412 T25408 punct ",",µM
R17347 T25413 T25408 conj Torin-1,µM
R17348 T25414 T25416 punct (,nM
R17349 T25415 T25416 nummod 500,nM
R17350 T25416 T25408 conj nM,µM
R17351 T25417 T25416 punct ",",nM
R17352 T25418 T25340 appos gift,VIII
R17353 T25419 T25418 prep of,gift
R17354 T25420 T25422 compound Dr.,Grey
R17355 T25421 T25422 compound Nathanael,Grey
R17356 T25422 T25419 pobj Grey,of
R17357 T25423 T25426 punct (,School
R17358 T25424 T25426 compound Harvard,School
R17359 T25425 T25426 compound Medical,School
R17360 T25426 T25422 appos School,Grey
R17361 T25427 T25426 punct ),School
R17362 T25428 T25422 punct ",",Grey
R17363 T25429 T25432 nmod LY249002,µM
R17364 T25430 T25432 punct (,µM
R17365 T25431 T25432 nummod 10,µM
R17366 T25432 T25422 appos µM,Grey
R17367 T25433 T25432 punct ",",µM
R17368 T25434 T25435 compound Cell,Signaling
R17369 T25435 T25432 conj Signaling,µM
R17370 T25436 T25432 punct ),µM
R17371 T25437 T25432 punct ",",µM
R17372 T25438 T25432 conj PD173074,µM
R17373 T25439 T25441 punct (,µM
R17374 T25440 T25441 nummod 2,µM
R17375 T25441 T25432 conj µM,µM
R17376 T25442 T25441 punct ",",µM
R17377 T25443 T25444 compound Cayman,Chem
R17378 T25444 T25441 npadvmod Chem,µM
R17379 T25445 T25441 punct ),µM
R17380 T25446 T25441 punct ",",µM
R17381 T25447 T25441 conj PD166866,µM
R17382 T25448 T25450 punct (,µM
R17383 T25449 T25450 nummod 20,µM
R17384 T25450 T25441 conj µM,µM
R17385 T25451 T25450 punct ",",µM
R17386 T25452 T25450 conj Calbiochem,µM
R17387 T25453 T25452 punct ),Calbiochem
R17388 T25454 T25450 punct ",",µM
R17389 T25455 T25450 conj 4EGI-1,µM
R17390 T25456 T25458 punct (,µM
R17391 T25457 T25458 nummod 50,µM
R17392 T25458 T25450 conj µM,µM
R17393 T25459 T25458 punct ",",µM
R17394 T25460 T25458 conj Calbiochem,µM
R17395 T25461 T25458 punct ),µM
R17396 T25462 T25303 punct .,VIII
R17397 T25463 T25465 compound Pan-caspase,zVAD.fmk
R17398 T25464 T25465 compound inhibitor,zVAD.fmk
R17399 T25465 T25472 nsubjpass zVAD.fmk,purchased
R17400 T25466 T25465 punct (,zVAD.fmk
R17401 T25467 T25465 appos 20,zVAD.fmk
R17402 T25468 T25469 nummod 30,µM
R17403 T25469 T25465 appos µM,zVAD.fmk
R17404 T25470 T25465 punct ),zVAD.fmk
R17405 T25471 T25472 auxpass was,purchased
R17406 T25472 T25472 ROOT purchased,purchased
R17407 T25473 T25472 prep from,purchased
R17408 T25474 T25473 pobj Bachem,from
R17409 T25475 T25472 punct .,purchased
R17410 T25476 T25510 nsubj Human,were
R17411 T25477 T25476 cc and,Human
R17412 T25478 T25476 conj mouse,Human
R17413 T25479 T25478 appos TNFα,mouse
R17414 T25480 T25482 punct (,ng/ml
R17415 T25481 T25482 nummod 10,ng/ml
R17416 T25482 T25479 appos ng/ml,TNFα
R17417 T25483 T25482 punct ),ng/ml
R17418 T25484 T25479 punct ",",TNFα
R17419 T25485 T25486 compound human,bFGF
R17420 T25486 T25479 conj bFGF,TNFα
R17421 T25487 T25489 punct (,ng/ml
R17422 T25488 T25489 nummod 25,ng/ml
R17423 T25489 T25486 appos ng/ml,bFGF
R17424 T25490 T25489 punct ),ng/ml
R17425 T25491 T25486 punct ",",bFGF
R17426 T25492 T25486 conj EGF,bFGF
R17427 T25493 T25495 punct (,ng/ml
R17428 T25494 T25495 nummod 50,ng/ml
R17429 T25495 T25492 parataxis ng/ml,EGF
R17430 T25496 T25495 punct ),ng/ml
R17431 T25497 T25492 punct ",",EGF
R17432 T25498 T25492 conj PDGF-BB,EGF
R17433 T25499 T25501 punct (,ng/ml
R17434 T25500 T25501 nummod 20,ng/ml
R17435 T25501 T25498 parataxis ng/ml,PDGF-BB
R17436 T25502 T25501 punct ),ng/ml
R17437 T25503 T25498 punct ",",PDGF-BB
R17438 T25504 T25498 cc and,PDGF-BB
R17439 T25505 T25498 conj IGF-1,PDGF-BB
R17440 T25506 T25508 punct (,ng/ml
R17441 T25507 T25508 nummod 50,ng/ml
R17442 T25508 T25505 appos ng/ml,IGF-1
R17443 T25509 T25505 punct ),IGF-1
R17444 T25510 T25510 ROOT were,were
R17445 T25511 T25510 prep from,were
R17446 T25512 T25513 compound Cell,Sciences
R17447 T25513 T25511 pobj Sciences,from
R17448 T25514 T25513 cc or,Sciences
R17449 T25515 T25513 conj Peprotech,Sciences
R17450 T25516 T25510 punct .,were
R17451 T25517 T25519 det All,reagents
R17452 T25518 T25519 amod other,reagents
R17453 T25519 T25520 nsubj reagents,were
R17454 T25520 T25520 ROOT were,were
R17455 T25521 T25520 prep from,were
R17456 T25522 T25521 pobj Sigma,from
R17457 T25523 T25520 punct .,were

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T25543 966-971 Protein denotes IGF-1
T25542 942-949 Protein denotes PDGF-BB
T25541 926-929 Protein denotes EGF
T25540 903-913 Protein denotes human bFGF
T25539 886-890 Protein denotes TNFα
T25538 805-812 Protein denotes caspase
T25537 801-804 Protein denotes Pan
T25536 204-213 Negative_regulation denotes inhibitor
T25535 354-363 Negative_regulation denotes inhibitor
T25534 204-213 Negative_regulation denotes inhibitor
T25533 350-353 Protein denotes JNK
T25532 200-203 Protein denotes Akt
R17458 T25532 T25534 themeOf Akt,inhibitor
R17459 T25533 T25535 themeOf JNK,inhibitor
R17460 T25535 T25536 themeOf inhibitor,inhibitor

test3

Id Subject Object Predicate Lexical cue
T25128 966-971 Protein denotes IGF-1
T25127 926-929 Protein denotes EGF
T25126 909-913 Protein denotes bFGF
T25125 886-890 Protein denotes TNFα
T25124 204-213 Negative_regulation denotes inhibitor
T25123 966-971 Protein denotes IGF-1
T25122 926-929 Protein denotes EGF
T25121 909-913 Protein denotes bFGF
T25120 886-890 Protein denotes TNFα