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PMC:3585731 / 494-686 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T25 158-167 Regulation denotes dependent
T24 138-147 Positive_regulation denotes activated
T23 99-109 Gene_expression denotes production
T22 86-90 Regulation denotes role
T16 153-157 Protein denotes RIP1
T15 94-98 Protein denotes TNFα
R5 T23 T22 themeOf production,role
R2 T15 T23 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T248 184-187 PRP-DOLLAR- denotes its
T247 176-183 IN denotes through
T246 168-175 NN denotes fashion
T245 158-167 JJ denotes dependent
T244 153-157 NN denotes RIP1
T243 151-152 DT denotes a
T242 148-150 IN denotes in
T241 138-147 VB denotes activated
T240 135-137 VB denotes is
T239 131-134 NN denotes Akt
T238 129-130 -COMMA- denotes ,
T237 118-129 NN denotes necroptosis
T236 111-117 IN denotes During
T235 99-109 NN denotes production
T234 94-98 NN denotes TNFα
T233 91-93 IN denotes in
T232 86-90 NN denotes role
T231 82-85 JJ denotes key
T230 80-81 DT denotes a
T229 74-79 VB denotes plays
T228 70-73 CC denotes and
T227 64-69 NN denotes cells
T226 59-63 NN denotes L929
T225 56-58 IN denotes in
T224 44-55 NN denotes necroptosis
T223 40-43 IN denotes for
T222 31-39 JJ denotes critical
T221 28-30 VB denotes is
T220 19-27 NN denotes activity
T219 12-18 NN denotes kinase
T218 8-11 NN denotes Akt
T217 3-7 IN denotes that
R77 T220 T218 arg1Of activity,Akt
R78 T220 T219 arg1Of activity,kinase
R79 T220 T221 arg1Of activity,is
R80 T220 T222 arg1Of activity,critical
R81 T220 T229 arg1Of activity,plays
R82 T221 T225 arg1Of is,in
R83 T221 T228 arg1Of is,and
R84 T222 T221 arg2Of critical,is
R85 T222 T223 arg1Of critical,for
R86 T224 T223 arg2Of necroptosis,for
R87 T227 T225 arg2Of cells,in
R88 T227 T226 arg1Of cells,L929
R90 T228 T217 arg1Of and,that
R91 T229 T228 arg2Of plays,and
R92 T229 T233 arg1Of plays,in
R93 T232 T229 arg2Of role,plays
R94 T232 T230 arg1Of role,a
R95 T232 T231 arg1Of role,key
R96 T235 T233 arg2Of production,in
R97 T235 T234 arg1Of production,TNFα
R98 T237 T236 arg2Of necroptosis,During
R99 T239 T240 arg1Of Akt,is
R100 T239 T241 arg2Of Akt,activated
R101 T241 T236 arg1Of activated,During
R102 T241 T238 arg1Of activated,","
R103 T241 T240 arg2Of activated,is
R104 T241 T242 arg1Of activated,in
R105 T241 T247 arg1Of activated,through
R106 T245 T244 arg1Of dependent,RIP1
R107 T246 T242 arg2Of fashion,in
R108 T246 T243 arg1Of fashion,a
R109 T246 T245 arg1Of fashion,dependent

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T92 94-98 Protein denotes TNFα
T93 153-157 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T407 153-157 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T402 94-98 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T396 131-134 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T395 8-11 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T389 131-134 http://www.uniprot.org/uniprot/P31751 denotes Akt
T388 8-11 http://www.uniprot.org/uniprot/P31751 denotes Akt
T381 8-11 http://www.uniprot.org/uniprot/P31749 denotes Akt
T382 131-134 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T129 12-27 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity
T111 118-129 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T110 44-55 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T103 118-129 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T102 44-55 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T135 12-27 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

simple1

Id Subject Object Predicate Lexical cue
T147 94-98 Protein denotes TNFα
T148 153-157 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T357 94-98 Protein denotes TNFα
T358 153-157 Protein denotes RIP1
T366 86-90 Regulation denotes role
T367 99-109 Gene_expression denotes production
R452 T357 T367 themeOf TNFα,production
R456 T367 T366 themeOf production,role

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T445 94-98 Protein denotes TNFα
T446 153-157 Protein denotes RIP1
T454 99-109 Gene_expression denotes production
R471 T445 T454 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T424 86-90 Regulation denotes role
T414 94-98 Protein denotes TNFα
T415 153-157 Protein denotes RIP1
T423 99-109 Gene_expression denotes production
R459 T414 T423 themeOf TNFα,production
R463 T423 T424 themeOf production,role

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T764 94-109 Gene_expression denotes TNFα production
T745 153-167 Protein denotes RIP1 dependent
T743 8-11 Protein denotes Akt
T742 8-18 Protein denotes Akt kinase
T734 94-98 Protein denotes TNFα
T729 131-134 Protein denotes Akt
R431 T734 T764 themeOf TNFα,TNFα production

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T573 111-117 IN denotes During
T572 109-110 . denotes .
T571 99-109 NN denotes production
T570 94-98 JJ denotes TNFα
T569 91-93 IN denotes in
T568 86-90 NN denotes role
T567 82-85 JJ denotes key
T566 80-81 DT denotes a
T565 74-79 VBZ denotes plays
T564 70-73 CC denotes and
T563 64-69 NNS denotes cells
T562 59-63 CD denotes L929
T561 56-58 IN denotes in
T560 44-55 NN denotes necroptosis
T559 40-43 IN denotes for
T558 31-39 JJ denotes critical
T557 28-30 VBZ denotes is
T556 19-27 NN denotes activity
T555 12-18 NN denotes kinase
T554 8-11 NNP denotes Akt
T553 3-7 IN denotes that
T585 184-187 PRP$ denotes its
T584 176-183 IN denotes through
T583 168-175 NN denotes fashion
T582 158-167 JJ denotes dependent
T581 153-157 NNP denotes RIP1
T580 151-152 DT denotes a
T579 148-150 IN denotes in
T578 138-147 VBN denotes activated
T577 135-137 VBZ denotes is
T576 131-134 NNP denotes Akt
T575 129-130 , denotes ,
T574 118-129 NN denotes necroptosis
R293 T553 T557 mark that,is
R294 T554 T556 compound Akt,activity
R295 T555 T556 compound kinase,activity
R296 T556 T557 nsubj activity,is
R298 T558 T557 acomp critical,is
R299 T559 T558 prep for,critical
R300 T560 T559 pobj necroptosis,for
R301 T561 T557 prep in,is
R302 T562 T563 nummod L929,cells
R303 T563 T561 pobj cells,in
R304 T564 T557 cc and,is
R305 T565 T557 conj plays,is
R306 T566 T568 det a,role
R307 T567 T568 amod key,role
R308 T568 T565 dobj role,plays
R309 T569 T568 prep in,role
R310 T570 T571 amod TNFα,production
R311 T571 T569 pobj production,in
R313 T573 T578 prep During,activated
R314 T574 T573 pobj necroptosis,During
R315 T575 T578 punct ",",activated
R316 T576 T578 nsubjpass Akt,activated
R317 T577 T578 auxpass is,activated
R318 T578 T578 ROOT activated,activated
R319 T579 T578 prep in,activated
R320 T580 T583 det a,fashion
R321 T581 T583 nmod RIP1,fashion
R322 T582 T583 amod dependent,fashion
R323 T583 T579 pobj fashion,in
R324 T584 T578 prep through,activated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T474 138-147 Positive_regulation denotes activated
T472 138-147 Positive_regulation denotes activated
T470 153-157 Protein denotes RIP1
T469 131-134 Protein denotes Akt
T468 99-109 Gene_expression denotes production
T467 94-98 Protein denotes TNFα
T466 8-18 Protein denotes Akt kinase
R218 T467 T468 themeOf TNFα,production
R219 T469 T472 themeOf Akt,activated

test3

Id Subject Object Predicate Lexical cue
T50 153-157 Protein denotes RIP1
T49 138-147 Positive_regulation denotes activated
T48 99-109 Gene_expression denotes production
T47 94-98 Protein denotes TNFα
T46 86-90 Regulation denotes role
T34 153-157 Protein denotes RIP1
T33 94-98 Protein denotes TNFα
R10 T47 T48 themeOf TNFα,production
R11 T48 T46 themeOf production,role
R12 T50 T49 themeOf RIP1,activated