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PMC:3585731 / 489-604 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T23 104-114 Gene_expression denotes production
T22 91-95 Regulation denotes role
T15 99-103 Protein denotes TNFα
R5 T23 T22 themeOf production,role
R2 T15 T23 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T235 104-114 NN denotes production
T234 99-103 NN denotes TNFα
T233 96-98 IN denotes in
T232 91-95 NN denotes role
T231 87-90 JJ denotes key
T230 85-86 DT denotes a
T229 79-84 VB denotes plays
T228 75-78 CC denotes and
T227 69-74 NN denotes cells
T226 64-68 NN denotes L929
T225 61-63 IN denotes in
T224 49-60 NN denotes necroptosis
T223 45-48 IN denotes for
T222 36-44 JJ denotes critical
T221 33-35 VB denotes is
T220 24-32 NN denotes activity
T219 17-23 NN denotes kinase
T218 13-16 NN denotes Akt
T217 8-12 IN denotes that
T216 3-7 VB denotes show
T215 0-2 PRP denotes We
R76 T215 T216 arg1Of We,show
R77 T220 T218 arg1Of activity,Akt
R78 T220 T219 arg1Of activity,kinase
R79 T220 T221 arg1Of activity,is
R80 T220 T222 arg1Of activity,critical
R81 T220 T229 arg1Of activity,plays
R82 T221 T225 arg1Of is,in
R83 T221 T228 arg1Of is,and
R84 T222 T221 arg2Of critical,is
R85 T222 T223 arg1Of critical,for
R86 T224 T223 arg2Of necroptosis,for
R87 T227 T225 arg2Of cells,in
R88 T227 T226 arg1Of cells,L929
R89 T228 T216 arg2Of and,show
R90 T228 T217 arg1Of and,that
R91 T229 T228 arg2Of plays,and
R92 T229 T233 arg1Of plays,in
R93 T232 T229 arg2Of role,plays
R94 T232 T230 arg1Of role,a
R95 T232 T231 arg1Of role,key
R96 T235 T233 arg2Of production,in
R97 T235 T234 arg1Of production,TNFα

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T92 99-103 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T402 99-103 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T395 13-16 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T388 13-16 http://www.uniprot.org/uniprot/P31751 denotes Akt
T381 13-16 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T129 17-32 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity
T110 49-60 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T102 49-60 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T135 17-32 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

sentences

Id Subject Object Predicate Lexical cue
T63 0-115 Sentence denotes We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production.
T6 0-115 Sentence denotes We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production.

simple1

Id Subject Object Predicate Lexical cue
T147 99-103 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T357 99-103 Protein denotes TNFα
T366 91-95 Regulation denotes role
T367 104-114 Gene_expression denotes production
R452 T357 T367 themeOf TNFα,production
R456 T367 T366 themeOf production,role

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T445 99-103 Protein denotes TNFα
T454 104-114 Gene_expression denotes production
R471 T445 T454 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T424 91-95 Regulation denotes role
T414 99-103 Protein denotes TNFα
T423 104-114 Gene_expression denotes production
R459 T414 T423 themeOf TNFα,production
R463 T423 T424 themeOf production,role

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T764 99-114 Gene_expression denotes TNFα production
T743 13-16 Protein denotes Akt
T742 13-23 Protein denotes Akt kinase
T734 99-103 Protein denotes TNFα
R431 T734 T764 themeOf TNFα,TNFα production

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T572 114-115 . denotes .
T571 104-114 NN denotes production
T570 99-103 JJ denotes TNFα
T569 96-98 IN denotes in
T568 91-95 NN denotes role
T567 87-90 JJ denotes key
T566 85-86 DT denotes a
T565 79-84 VBZ denotes plays
T564 75-78 CC denotes and
T563 69-74 NNS denotes cells
T562 64-68 CD denotes L929
T561 61-63 IN denotes in
T560 49-60 NN denotes necroptosis
T559 45-48 IN denotes for
T558 36-44 JJ denotes critical
T557 33-35 VBZ denotes is
T556 24-32 NN denotes activity
T555 17-23 NN denotes kinase
T554 13-16 NNP denotes Akt
T553 8-12 IN denotes that
T552 3-7 VBP denotes show
T551 0-2 PRP denotes We
R291 T551 T552 nsubj We,show
R292 T552 T552 ROOT show,show
R293 T553 T557 mark that,is
R294 T554 T556 compound Akt,activity
R295 T555 T556 compound kinase,activity
R296 T556 T557 nsubj activity,is
R297 T557 T552 ccomp is,show
R298 T558 T557 acomp critical,is
R299 T559 T558 prep for,critical
R300 T560 T559 pobj necroptosis,for
R301 T561 T557 prep in,is
R302 T562 T563 nummod L929,cells
R303 T563 T561 pobj cells,in
R304 T564 T557 cc and,is
R305 T565 T557 conj plays,is
R306 T566 T568 det a,role
R307 T567 T568 amod key,role
R308 T568 T565 dobj role,plays
R309 T569 T568 prep in,role
R310 T570 T571 amod TNFα,production
R311 T571 T569 pobj production,in
R312 T572 T552 punct .,show

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T468 104-114 Gene_expression denotes production
T467 99-103 Protein denotes TNFα
T466 13-23 Protein denotes Akt kinase
R218 T467 T468 themeOf TNFα,production

test3

Id Subject Object Predicate Lexical cue
T48 104-114 Gene_expression denotes production
T47 99-103 Protein denotes TNFα
T46 91-95 Regulation denotes role
T33 99-103 Protein denotes TNFα
R10 T47 T48 themeOf TNFα,production
R11 T48 T46 themeOf production,role